Cfun015263.1
Basic Information
- Insect
- Cecidostiba fungosa
- Gene Symbol
- -
- Assembly
- GCA_900474305.1
- Location
- UCOJ01001196.1:31795-36894[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3.2e-06 0.00027 21.3 2.2 1 23 388 410 388 410 0.98 2 23 2.1e-06 0.00017 21.9 2.8 1 23 416 439 416 439 0.96 3 23 0.024 2 9.1 0.5 2 23 446 467 445 467 0.96 4 23 7.1e-06 0.0006 20.2 0.4 1 23 473 495 473 495 0.97 5 23 4.4e-05 0.0037 17.7 3.9 1 23 501 523 501 523 0.97 6 23 0.00015 0.013 16.1 0.8 1 23 529 551 529 551 0.97 7 23 0.18 15 6.4 9.4 1 23 557 580 557 580 0.96 8 23 0.00011 0.0091 16.5 0.2 1 23 671 693 671 693 0.99 9 23 2.1e-05 0.0017 18.8 0.8 2 23 700 722 699 722 0.94 10 23 0.0019 0.16 12.6 0.6 1 23 728 750 728 750 0.99 11 23 1.2e-05 0.001 19.5 2.5 1 23 756 778 756 778 0.96 12 23 0.00041 0.034 14.7 2.5 1 23 784 806 784 806 0.97 13 23 0.00014 0.012 16.2 0.9 3 23 814 834 812 834 0.97 14 23 0.0017 0.14 12.8 3.4 1 21 840 860 840 861 0.93 15 23 0.022 1.9 9.2 0.1 1 23 933 956 933 956 0.94 16 23 0.00015 0.013 16.0 1.2 1 23 968 990 968 990 0.98 17 23 0.0055 0.46 11.1 2.9 1 23 1018 1040 1018 1040 0.99 18 23 6.5e-05 0.0055 17.2 0.1 3 23 1048 1069 1046 1069 0.92 19 23 0.024 2 9.1 0.2 1 23 1075 1097 1075 1097 0.98 20 23 6.5e-05 0.0055 17.2 0.5 1 23 1103 1125 1103 1125 0.98 21 23 0.00025 0.021 15.3 1.3 1 23 1131 1153 1131 1153 0.96 22 23 7.5e-05 0.0064 17.0 0.1 1 23 1159 1181 1159 1181 0.98 23 23 0.00018 0.015 15.8 2.1 1 23 1187 1209 1187 1210 0.93
Sequence Information
- Coding Sequence
- ATGGAGGAGGTTCCAAGTGACATGGAAGTTGTTATAAAAAGTGTTACCAGTAagggaataataataagggaCAGAGACGAAATAAACGAGAAAGGAGAGGAGATTAAAACTACAGAGTACTTCTTGGACGTTGGTGATCAAGGTGATGGAAATGAAGTTGACGACACACAGTTCGTTACTGTACAGAGCGAACACGATGGAGAGTTTGTTGCAGTGGACGTTGCTGATTCTGGTCAATTGTTAATACCGGATAAGGAAGTTATAATGTGGAACGAGATCTGCCGAGTTTGTGCCAACAGTGGAAATGATAAAGAGTTTATTCCGATATTCTCTGGAGAGGGAATAGAGCACAATTTGAGCACCAAAATTGAAACATATCTGCCTATGAGAGTTTCTGAAAATGATACTCTTCCTCTTCAAGTATGTTACAATTGCGCAGCAACAATGATAGCATGGGATGAGATATTTAAGGGCTGTATGGATGCTCAGGAGCGGCTTCTAGAATTacaaagtaaattaaatttgaaagagcagtattataatgaatcaccgattgaagaagaaaacatgGGAACAGTATTAGAAGTTGAAACTACTAACCACGAAGAACCTCAGctCGACACCAAAGATGCAGAGTCTTTGGAAACATTGCAGATTGTTGAAACCAACAgGTCCAGAAGTTCACAGGCACCAAAAACAGATACATCAGATAAACAGAgattaaaaaaaccttttaaCGAAAAGGAGTTATTAATATCTGATAGTAATGAAAGTGAATGTTTGACTGGGGCAACAGTAATACCAAAtcctgaaaaagaaatttcagaAGAATCTGTTAAGGAGGTGAATTGTCTAGTAAGCGAAAAAGTCAATGCTGTTGAGAAAGAATCTGGAATCACAACAGAAGTACTAGATCTATTTGAGATAAGCACTTCGAAAGAAACGGATGAAATCAGCAATTTTACGGAAAACACAGAATTGTCCGAAGATGAAATTGCAACAGCAACCGCCAACAGAGTAAATCTAGAGCTCGAAGAGTCCGGAAACGTCGAAGATGAATCCGTAAACCACAGTTCAGAAAGCTCCGACGTCAACGCTCccgaaaaatcatttccagAGACCGACAAGAAACCCAAGACTAAAAAACGAATGCCGTCATCGTACAATTGCGAGGACTGCGGTAAAATCTTCAAGTTCAAGGATACGTTTTCCCGGCATCGGCGCATCCACTCCGACGAGCGCCCGTTCACCTGTCACGTTTGCGGAAAGCGGTTTCGCGACTCTGGCGGACTGTGCCGCCATGTCCGAGATGTTCACGCCAAGGTGAAGAAGTGGCCGTGCAGCAGGTGCACCCGAAGTTTTGCATCAAAAGCGACGCGTGACGACCACGAACGTACTCACACAGGCGAGCGGCCCTACATCTGCGATAGCTGCGGCAAGAGCTTCAAAACCAAGGCTTCGCTCTACATTCATGCCAAGATCCACACTGATCTATTCCCTCATTCCTGCGTTCATTGCGACAAGAGTTTCCGGAGGAGGCAGGAGCTGCTGGCGCATGTGACGACTCACACGGGTGAGAAGAACTTCGAGTGCGATGTGTGCTTCAAGAGCTTCAGGATAAAAATGGAGCTGAGGAGACACGCGCTCAGCCACTCGGATGACAAGCCGTTCGTCTGCCACCTGTGCGACTTCAAATGTAAGCAGAGGCGGTATCTCAACAATCACGTGAAGCATAAGCACAGCTTGATCGAGCAAACAGCAAAGGAAGGAACGAGCACATGCTTGAATCTCGAAGATGGCGGGGTCATCACCATCCTAACGACAGAGCCGTCGATGATAACAGCAACCGAACTCGATACCAGGACGATTGTAACGCCTCGTCGTCGAAAGCGTAGCAAGAAGGATCTCTTGGAAGCCGACGGCTCAAAGAAGGCGAAGTCCATCAACCGCAATGGCCAACGCCGGCAGGAGATCGTCCGAGCCAAGGTAATAGTCGATGGCACTACCTACTACAAGTGCGAGGAATGTCCCAAGCTTCTGTCCACTCCATACAACTACGTCGCACACAAGCGCGTGCATACGCACGAGCGTCCGTGCACCTGCGATATCTGTGGCAAAAGCTTCACGGCGGGATCTTCGTTGAACCGACACGTGCGTGACGTCCACCAAAAGATCAAGGACTATAAGTGTGACTATTGCGACCGCAGGCTCGCGTCGAAAGTCGCACGGGACGAGCACCAGCGCACTCATACGGACGAACGGCCTCACATCTGCGAGACCTGTGGCAAGAGCTTCCGACAGCGAGCATCGCTTTCGGTGCATAGAAGGTTCCATTCCAAGAGCTTCCTGTTCAACTGCAAGCTCTGCCACAGAGGATTCCCCAGGAAGCAGGACATGGAGAGGCATGAGTTGACTCATACCGACCAGAAACCTTACGGCTGCAAGCTTTGCGACAAAACTTTCAGGAGCTCGGCCTCGGCCATAAGGCACAGATCGACTCACGATAGCGATAATAAACATATCTGCGATATGTGCGGAGAGTGTTTTAATCAGGAGAGATATCTTAAGAATCACAAAAAGAAAGGCAATCCCGATATCTTTCATTACAGACAGGCCAGCAGCAAACTAAAAAGCAAACTCTGCACGAAAGCAGTGCAAGAGAAGCTTCTACCTAGCTTTCGCCCAGCCAAGCAGTGTACCAAGACTTTGGAACCCGTCGACCCGCTGAAAATCGAGGAACCGTTCAACACCAACGAGCCAGTCAAGCAGGAGCAGGAAAATAGCGAGACATTCACGTACATGTGCGGAGTCTGCGACGAGCTCTTtggagaagaggaagagctATTGCGCCATATGCACGATACGCACGAGGAGGGCAAGTCTCAGCGCGACCCAGTACGGTACGAGTGCAGCCTCTGCAATCGCTCGTACCGGCTCAAGCTCAACCTGATTAACCATCTGAACAAACATAAACGCGCCAATCATACGCCTCGTGAGGCAAAGCTTCTCGCCAAGTCCAAGGTCCGTTTAAACCAATACACCGGATCCATATACAGATGCGATACCTGCAAGAAGGTTTTATCAAACCGAAAGGCATGCCTGCGCCACATCCGAGTTCACAACAACGACAGGCCTATCATCTGCGAGGAATGCGGCAAGTCTTACCGCATACAGGAAGACTTGAAGCGACACGTGAACGATGTGCATAGGAAGATCAAGAGGTATCCCTGTGACCTGTGCGAAAAGTTCTTCGCCGCAAAGGGAACTAGAGACGCGCATAGGAGGATCCATACCGGGGAGAAGCCATTCGAATGCAAGGAATGCGGCAAGTTCTTCAGATCAGTCAACCTGCTGGGGATACACAAGAGGGTACACAGTGACTATCGACCCCACAAGTGTAACTCTTGCGAGAAAGCCTTCCGATCGAAGCAGAAGCTCGAGGCGCACGAGGCTATTCACACGGGTATCAGACCGTATCCATGCGACATATGCAATAAAATGTTCGCGGCTAAAGGTGAGATGACCAGGCACCGGTCTGTGCACTTTAGCGACAAGCCTTTCCTCTGCTCGGAGTGCGGACTAGCTTTCAGGCTAAACAGGTATCTGAAGACGCATATCAAGTCGCACCACAAGGATAAAGTTGAGATTTTACTGAAAACTTTGACGGAATGA
- Protein Sequence
- MEEVPSDMEVVIKSVTSKGIIIRDRDEINEKGEEIKTTEYFLDVGDQGDGNEVDDTQFVTVQSEHDGEFVAVDVADSGQLLIPDKEVIMWNEICRVCANSGNDKEFIPIFSGEGIEHNLSTKIETYLPMRVSENDTLPLQVCYNCAATMIAWDEIFKGCMDAQERLLELQSKLNLKEQYYNESPIEEENMGTVLEVETTNHEEPQLDTKDAESLETLQIVETNRSRSSQAPKTDTSDKQRLKKPFNEKELLISDSNESECLTGATVIPNPEKEISEESVKEVNCLVSEKVNAVEKESGITTEVLDLFEISTSKETDEISNFTENTELSEDEIATATANRVNLELEESGNVEDESVNHSSESSDVNAPEKSFPETDKKPKTKKRMPSSYNCEDCGKIFKFKDTFSRHRRIHSDERPFTCHVCGKRFRDSGGLCRHVRDVHAKVKKWPCSRCTRSFASKATRDDHERTHTGERPYICDSCGKSFKTKASLYIHAKIHTDLFPHSCVHCDKSFRRRQELLAHVTTHTGEKNFECDVCFKSFRIKMELRRHALSHSDDKPFVCHLCDFKCKQRRYLNNHVKHKHSLIEQTAKEGTSTCLNLEDGGVITILTTEPSMITATELDTRTIVTPRRRKRSKKDLLEADGSKKAKSINRNGQRRQEIVRAKVIVDGTTYYKCEECPKLLSTPYNYVAHKRVHTHERPCTCDICGKSFTAGSSLNRHVRDVHQKIKDYKCDYCDRRLASKVARDEHQRTHTDERPHICETCGKSFRQRASLSVHRRFHSKSFLFNCKLCHRGFPRKQDMERHELTHTDQKPYGCKLCDKTFRSSASAIRHRSTHDSDNKHICDMCGECFNQERYLKNHKKKGNPDIFHYRQASSKLKSKLCTKAVQEKLLPSFRPAKQCTKTLEPVDPLKIEEPFNTNEPVKQEQENSETFTYMCGVCDELFGEEEELLRHMHDTHEEGKSQRDPVRYECSLCNRSYRLKLNLINHLNKHKRANHTPREAKLLAKSKVRLNQYTGSIYRCDTCKKVLSNRKACLRHIRVHNNDRPIICEECGKSYRIQEDLKRHVNDVHRKIKRYPCDLCEKFFAAKGTRDAHRRIHTGEKPFECKECGKFFRSVNLLGIHKRVHSDYRPHKCNSCEKAFRSKQKLEAHEAIHTGIRPYPCDICNKMFAAKGEMTRHRSVHFSDKPFLCSECGLAFRLNRYLKTHIKSHHKDKVEILLKTLTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -