Cfun017223.1
Basic Information
- Insect
- Cecidostiba fungosa
- Gene Symbol
- lolal
- Assembly
- GCA_900474305.1
- Location
- UCOJ01001082.1:33479-35142[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.1 9.6e+02 -0.3 0.0 3 15 29 41 27 44 0.88 2 3 1.4 1.3e+03 -0.7 0.1 15 24 235 244 232 245 0.85 3 3 1.1e-09 1e-06 28.4 0.0 1 38 323 361 323 364 0.94
Sequence Information
- Coding Sequence
- ATGAGTTCAGAACAGCAGTACTGTTTACGCTGGAACAACCACAGCTCCAACTTTGTAACTGTGTTCGAGCATCTGCTCAGGACTGAGGCCTTCACCGATGCCATTGTGTCTGTGCAAGGTGGCAGGACGATAAGATGTCACAAAATGGTACTTGCAGCCTGCTCATCCTACTTCGAGGAACTGTTGATCAAGAACGCCACCAAGGTTGCCACTATCATCATCAACGAGGTCAAGTACTCCGAGTTCAAGGCCATCCTGGAATACATGTACAGGGGTGAGGTGAACATTGCTCAGGATGAGCTCCCTGGGCTTCTCAAAGCTGCAGCCCTCCTCAGGATCAAAGGTCTAGTCGAAGACCCAACAAGAGACATACACAGCGAGGATGTGGACACTGAAATGTCAGTAACCCCAGGTATCAACCACGTCAACCCAATCGACCAGATAAACCACAGTATGGCAAATGGCTTGTCTCTCAGTAATGGGCACGCCTCGCCTTCGCACGTTCACCTTCCCATTCCCTCCAACTTAGTTCCCCCTGGCAAGTCGTCCATTGAGAGCAACCAAATACCCACGTGGATGACCTTTGCGGGTGCGTTTCCTCACTCCGAGCACCCGACCTCAGGACCACCGCCACATAGCCAACACTCGATTCTTGGCACCTCCTACGACATCATCACCAGCGAGACGTCGCCCCTCAGCCGAAAGAAGCTATCCGCTCGGAAGGCCAGCAGAGACACGCCGATACTGAGAAACGTTCTGGATCTGAATCACATGGACAGCACAGCGGCTGACAGACAGGAGCCGTCCTGCTCGAACAGCAACGGATCCTTCCACGACTCGGACAGAAGAAGCAGCGCCGAGCTTTCCGACGAGGGCAAGTGCTCGCCGCCGCACGCGAAACACAACGGCACCGGCAAGTCAACGACGAGTTCCAACAGGCCCGACTGGAAGCGCTACAAGCAGTACACGCGCGATGACATCCAGAATGCCATGCTCTCGGTGCAGAACAGGGAGATGAGCGCGCTCAAGGCCGCACGTAAATACCAGGTCCCGTCGCGAACGCTCTACGACAAACTCAAGAAGGCCGGCATCCTGCCCACCCGTCCCCCGGGAGGCTCGCGTAAATTCGAACACGAACCGCTCAATGGCATCGACAACGGCAGCGCCCGGTTCCCCTACCCCAGCAGTGTCAACGGCGCTGTCTACGGAAACAGCGCCCTGTCCGAGAACGAAAGCGAGACCAATGGCTTGCACAACGGATCCCTCGTTATAGACATGTCGACGCGTAGCCCCAGTCCCGCTCGTTCCGCCCAGAACTTGGTCGCACCCGTTATGAACGACGACCTTGTCGAGGACCTCTCCGTTGCcaggagtagcagcagcagcaggagtaaTAACACCACGCCGGTCATCGTGCCGCCACTCATAAAGATAGCCACCCCGGTAAAGCAGGAGCAACCGGATGACACCGAGGAAACGGCTTGA
- Protein Sequence
- MSSEQQYCLRWNNHSSNFVTVFEHLLRTEAFTDAIVSVQGGRTIRCHKMVLAACSSYFEELLIKNATKVATIIINEVKYSEFKAILEYMYRGEVNIAQDELPGLLKAAALLRIKGLVEDPTRDIHSEDVDTEMSVTPGINHVNPIDQINHSMANGLSLSNGHASPSHVHLPIPSNLVPPGKSSIESNQIPTWMTFAGAFPHSEHPTSGPPPHSQHSILGTSYDIITSETSPLSRKKLSARKASRDTPILRNVLDLNHMDSTAADRQEPSCSNSNGSFHDSDRRSSAELSDEGKCSPPHAKHNGTGKSTTSSNRPDWKRYKQYTRDDIQNAMLSVQNREMSALKAARKYQVPSRTLYDKLKKAGILPTRPPGGSRKFEHEPLNGIDNGSARFPYPSSVNGAVYGNSALSENESETNGLHNGSLVIDMSTRSPSPARSAQNLVAPVMNDDLVEDLSVARSSSSSRSNNTTPVIVPPLIKIATPVKQEQPDDTEETA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00286517;
- 90% Identity
- iTF_00286517;
- 80% Identity
- iTF_00286517;