Basic Information

Insect: Catotricha subobsoleta
Gene Symbol: -
Assembly: GCA_011634745.1
Location: JAABKK010000767.1:21861931-21869307[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.9 4.1e+02 2.4 5.2 1 11 329 339 329 352 0.78

2 14 2.9e-05 0.0024 18.9 2.3 1 23 358 381 358 381 0.90

3 14 0.41 34 5.8 0.4 1 23 388 411 388 411 0.95

4 14 6.4e-06 0.00054 20.9 2.5 1 23 419 441 419 441 0.98

5 14 4.2e-05 0.0035 18.3 4.8 2 23 448 469 447 469 0.97

6 14 0.00063 0.053 14.6 0.9 3 23 477 497 475 497 0.97

7 14 6.7 5.6e+02 2.0 0.1 2 23 798 819 797 819 0.81

8 14 2.1 1.8e+02 3.5 3.9 1 11 844 854 844 867 0.78

9 14 0.00012 0.01 16.8 1.3 1 23 873 896 873 896 0.90

10 14 6.7 5.6e+02 2.0 0.1 2 23 905 926 904 926 0.81

11 14 2.1 1.8e+02 3.5 3.9 1 11 951 961 951 974 0.78

12 14 1.2e-05 0.00099 20.1 2.1 1 23 980 1003 980 1003 0.90

13 14 0.41 34 5.8 0.4 1 23 1010 1033 1010 1033 0.95

14 14 1.3e-05 0.0011 19.9 2.5 1 23 1041 1063 1041 1063 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.9	4.1e+02	2.4	5.2	1	11	329	339	329	352	0.78
2	14	2.9e-05	0.0024	18.9	2.3	1	23	358	381	358	381	0.90
3	14	0.41	34	5.8	0.4	1	23	388	411	388	411	0.95
4	14	6.4e-06	0.00054	20.9	2.5	1	23	419	441	419	441	0.98
5	14	4.2e-05	0.0035	18.3	4.8	2	23	448	469	447	469	0.97
6	14	0.00063	0.053	14.6	0.9	3	23	477	497	475	497	0.97
7	14	6.7	5.6e+02	2.0	0.1	2	23	798	819	797	819	0.81
8	14	2.1	1.8e+02	3.5	3.9	1	11	844	854	844	867	0.78
9	14	0.00012	0.01	16.8	1.3	1	23	873	896	873	896	0.90
10	14	6.7	5.6e+02	2.0	0.1	2	23	905	926	904	926	0.81
11	14	2.1	1.8e+02	3.5	3.9	1	11	951	961	951	974	0.78
12	14	1.2e-05	0.00099	20.1	2.1	1	23	980	1003	980	1003	0.90
13	14	0.41	34	5.8	0.4	1	23	1010	1033	1010	1033	0.95
14	14	1.3e-05	0.0011	19.9	2.5	1	23	1041	1063	1041	1063	0.98

Sequence Information

Coding Sequence: atgttaaaatcaaCCATTCCTATATTTTCACCGACTTCCATAAAATGGATTCTTTGGAAAAAGCAATTAAACCATTACATCTGTGACAAGGATTACAGTGAAtcagaaaaaatatcatttttattgatgcaTCTTCATCAAATTGTATATACAACATTAGTTGAATTGTGCTGCCCGAAATTGCTAAATGAATTGAGTTATGAACGATTATGTGAATTACTTCATAGACGATACACGTCTCCTGTTGAAACATTCCAGCACCGACGGAATTTTGATTCAGCTTCCAGAAATGAAAACGAATTAACCTCTGACTGGGCGAAACGATTAATAGATTTAGGTGAAAACTGCAACTttggaattaataaaaatgtgtttcttttaaaaaaattcgaaattgGTCTTGATGTAGATGGGAGAgacaatatgatatttaaaagaatttccgATAAAACTGTTGGGACTGTTGACGGAGCATTATTAATAGCATTgcaatttgaacaaaaatcgGGCTCACATGTATTTAATACCGAGATGCAACAACCACAATTAAACAATGCCGTAGTACCaagaaaaaattcacaatCATCCAATCATATAAATGCAAAGacTATTTTGTCAGCTGTTAAACATGAGGACGAACTGATCATCATCGAcgatagaaatttaaatgataacatTGTTTTATATACTGCTAAGGCTAACAATGGAAATGGTGATGTGAacccattaaataatatttcagaaaatgcTGATAACTTCAATCAGCccattaatcatttaataaaattcgatTCAACTTTCGATAGAAAGTTTCAGTGTGCTGttcaaatgtcaaaattgTGTCAAGTTGAATGCGGTACATGCAATAAAATACCAATTAAATATCTTAAgattcaacaaataaatgcGCATGGACTGAAAAGCCCTATTTACGACCATTTAACGCGAACACTTCCAAAGCCAAATATCAGTCAAATAAAGAATTACGAGTGCCATTTGTGTCACAAAAACTTTACTTGTATTCGAAGTATGAAGTTTCACATGAACTTATATCATACGGCAGAGAATTTATTTTCGTGTAAAAAATgcgataaaaaatttactagGGAATCCAAACTAAGAGCACATGCTACTGAGAAACATAAACATGAtggtaaaacatttcaatgtTTCATATGCAAAGTAAAATATCAATCATTAGGACCACTAAGAGGTCACCTAACAAGGTGGCATCCTTTAaaagatgataaaaaattcACTTGTTcgatttgcaataaaatttattcccATGAAAAAACATTAGCTCGACATATGCGGTTACACACTGGAAAGAATTTACAGGAAtgtaaaatatgcaaaaaggtattttcacatttttcccGCTTAAAAAAGCATATGAATAATCATGcggttaaaaagaaatttgggTGCGATATATGtggcaaaaaatttaaaattatggaaTATTTGAATCGGCATAAGAAACTGCATGCACAGATAAACTCACAAGAATCATTCATTGGGCAAGCAATTTCGATTTGTGAtgtgaaattaataatgttaaactCAACCATTCCTAAATTTTCACCCTCCTCCAATAAATGGATACtatggaaaaagaaattaaaccaGTACATCTGTGACAAGGATTACAGTGAAtcagaaaaaatatcatttttattgaagcATCTTcatcaaattgtatataaaacattagTTGAATTGTGTTTCCCGAAATTGCCAAATGAAATGAGTTATGAACGATTGTGTGAATTACTTCATAAGCGTTATACATCCCTTGTTGAAACATTTCGGGAACGACAGAAGTTTCATTCAGCTTCCAGAAATGAAAACGAATTAATCTCTGACTGGGCGAAACGATTAATTGAATTAGGTGAAAATTGCAACTttggaattaataaaaacgcatttattttggaaaaattcaCAATTGGTCTTGATTTTGATGGCGAGCACaattcgatttttaaaaaaatttacgaagaTGAAGAAACTTTGACTATGGATAGAGCATTATTAATTGCATTGCGATTTGAGCACAAACCTGAATCAGTTGTATTTGATaatgtacaaaaatttattattcgtagATTACCAAGTGAAGATTCtcaattatcattaaatgcACAGatgaaaCCACCACCTGTTAAACAGGAGAAAGAGCTGAATATCATTGATGAcatcaatttaaatgataacacCGAAGTAAATGTTGATAATAATggagatgatgatgatgacagATTCAGTAATGTTATAGAAAATGCTGATAGCCTCAACGATCCCGACAATGAGCATTTAAGAAAATCCGATCCAACTCTCGATAGAAAGTTTCAGTGTTTTGTCCAATTGTCAAAATTGTGTCAAGTTGAATGCGgtatatgcaataaaaaaataccaattaaATATCTTAAGATTCATCAATTAAATGCTCATGGACTGAAAAAGCCTATTTACGACCATTTAACGCGAACACTTCCAAAACCAAATATCAGTCAAATAAAGAATTACGAGTGCCATTTGTGTAACAAAAACTTTACTTGTATTCGAAGTATGAAGTTTCACATGAACTTATATCATACgggagaaaatttattttcgtgtCAAAAATgcggtaaattatttactaggGAATCTAAACTAAAAGCACATGCTACTGAGAAACATAAACATGATAGTTTGTGTCAAGTTGAATGCGgtatatgcaataaaaaaataccaattaaATATCTTAAGATTCATCAATTAAATGCTCATGGACTGAAAAAGCCTATTTACGACCATTTAACGCGAACACTTCCAAAACCAAATATCAGTCAAATAAAGAATTACGAGTGCCATTTGTGTAACAAAAACTTTACTTGTATTCGAAGTATGAAGTTTCACATGAACTTATATCATACGGGAGAGAATTTATTTTCGTGCAAAAAATGCGGTAAAAAATTTACTAGGGAATCCAAACTAAGAGCACATGCTACTGAGAAACATAAACATGAtggtaaaacatttcaatgtTTCATATGCAAAGTAAAATATCAATCATTAGGACCACTAAGAGGTCACCTAACAAGGTGGCATCCTTTAaaagatgataaaaaattcACTTGTTcgatttgcaataaaatttattcccatgagaaaacattaattcaaCATATGCGGTTACACACTGGAAAGAATTTACAGgaatgtaaaatatatGATAAAGCTAAGACAAATAATTCCGAAAAgttgaataaataa
Protein Sequence: MLKSTIPIFSPTSIKWILWKKQLNHYICDKDYSESEKISFLLMHLHQIVYTTLVELCCPKLLNELSYERLCELLHRRYTSPVETFQHRRNFDSASRNENELTSDWAKRLIDLGENCNFGINKNVFLLKKFEIGLDVDGRDNMIFKRISDKTVGTVDGALLIALQFEQKSGSHVFNTEMQQPQLNNAVVPRKNSQSSNHINAKTILSAVKHEDELIIIDDRNLNDNIVLYTAKANNGNGDVNPLNNISENADNFNQPINHLIKFDSTFDRKFQCAVQMSKLCQVECGTCNKIPIKYLKIQQINAHGLKSPIYDHLTRTLPKPNISQIKNYECHLCHKNFTCIRSMKFHMNLYHTAENLFSCKKCDKKFTRESKLRAHATEKHKHDGKTFQCFICKVKYQSLGPLRGHLTRWHPLKDDKKFTCSICNKIYSHEKTLARHMRLHTGKNLQECKICKKVFSHFSRLKKHMNNHAVKKKFGCDICGKKFKIMEYLNRHKKLHAQINSQESFIGQAISICDVKLIMLNSTIPKFSPSSNKWILWKKKLNQYICDKDYSESEKISFLLKHLHQIVYKTLVELCFPKLPNEMSYERLCELLHKRYTSLVETFRERQKFHSASRNENELISDWAKRLIELGENCNFGINKNAFILEKFTIGLDFDGEHNSIFKKIYEDEETLTMDRALLIALRFEHKPESVVFDNVQKFIIRRLPSEDSQLSLNAQMKPPPVKQEKELNIIDDINLNDNTEVNVDNNGDDDDDRFSNVIENADSLNDPDNEHLRKSDPTLDRKFQCFVQLSKLCQVECGICNKKIPIKYLKIHQLNAHGLKKPIYDHLTRTLPKPNISQIKNYECHLCNKNFTCIRSMKFHMNLYHTGENLFSCQKCGKLFTRESKLKAHATEKHKHDSLCQVECGICNKKIPIKYLKIHQLNAHGLKKPIYDHLTRTLPKPNISQIKNYECHLCNKNFTCIRSMKFHMNLYHTGENLFSCKKCGKKFTRESKLRAHATEKHKHDGKTFQCFICKVKYQSLGPLRGHLTRWHPLKDDKKFTCSICNKIYSHEKTLIQHMRLHTGKNLQECKIYDKAKTNNSEKLNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -