Csub011499.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- Ranbp16_1
- Assembly
- GCA_011634745.1
- Location
- JAABKK010007667.1:52560390-52578431[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.061 5.1 8.4 0.6 3 23 552 573 551 573 0.94 2 10 1.8e-05 0.0015 19.5 2.9 2 23 673 695 672 695 0.96 3 10 0.00012 0.0099 16.9 3.9 1 23 713 736 713 736 0.97 4 10 2e-05 0.0017 19.3 0.3 1 23 781 804 781 804 0.97 5 10 6.1 5.1e+02 2.1 4.9 1 23 825 846 825 846 0.91 6 10 8.5e-05 0.0071 17.4 0.2 1 23 850 873 850 873 0.93 7 10 0.0025 0.21 12.7 1.0 1 23 879 901 879 901 0.98 8 10 0.65 55 5.1 2.3 1 23 911 936 911 936 0.93 9 10 0.00018 0.015 16.3 4.0 1 23 969 991 969 991 0.99 10 10 6.7e-05 0.0056 17.7 2.1 1 21 997 1017 997 1018 0.97
Sequence Information
- Coding Sequence
- ATGTtttcgataaataattttaagctCTTTCTCTTTTGCTTTAGAATACAgttgttacattttttttataagcaatattttaattataacaataatgattttaaaaggGATGGTTTGGAAGATCCACTCGATGATTTAGCAATGGTACAACAGCAATTAGATCAATTATCAGTTATTGTAAGATGTGAATATGATCAAACCTGCAGCTTCCTAATACGTACATTTGATcagacGGCCAGCACTTATCAAGAACTACTTGGAAATCCAGTAAATAATGCAATTGAAATTGCTGTACATGAAAGTCAACTAACTTGGCTTGTATACATAATTGGTGCAGCAATTGGTGGTCGCATAACGTTTACGGCGAATGATGAGCAAGATATTTTAGATGGTGATTTAGTTGTTAGGgTTCtacaattaatgaatttaaccGATTCACGTTTACCTCAAATGGGCTGTGAAAAATTAGAACTTTCAATGATGTCATTTTTAGATCACatacgaaaaatttatattatcgaACAAATGCAaaagatgaaaatttataaacgcTTAGCAGAATTACTGGGCATTAATGATGAGCCAATGTTGCTGAGTGTTATCAATCGTAAAATaattacaaatttaaaattttggggGCAATCAGAACTAATAATAAGAAAGACTTTAAACCTCCTAAATGAATTGTCAGTTAGTTATAGTTGGGTACGGAAATTGGTGAAATTGGATGAAATACAGTTCTTGCTTAATAATCACacgagtgaacatttttcatttcttggAAGTAATGTAGCAGTTAGTGAAATGAGATCTCGCAGTATGTTTTATACATCGTTGGGTCGTCTTTTAATGGTTGATTTAGGCGAAGATGAGGAAcgtttttacaattttatgttaCCATTAACAAACTCATTTGAATCCATTGGAAGTATGTTAATGGATACAAACACTTATCCTAGTGAAGAAGCGAAAAAGGCTTTAATTGGTCTGTCACGTGATTTGAGAGGATTGACTTTTTCGTCAAGCAAGAAAAATGCTTATATGATGTTCTTTGATTGGATatatCCGGATTATACACCAATTCTAATTAGAGCAGTAGAACTCTGGGCACATGATCCTCAAGTAACAACACcagttttgaaattatttgctgAATTAGTTCAAAATAGGGCACAAAGATTACAATTTGATATATCTAGTCCAAATGGAATACTGTTATTTCGCGAAGCATCTAAAGTTATATGCGCTTATGgaaatcGAATAATGACTCTTGATGTTCCcaaaaatcaacaatatcCATTACGATTAAAAGGTATATCCATTTGTTTTACAATGTTAAAGGCGGCACTATGCGGTAATTACGTAAACTTTGGTGTTTGCAAATTATATGGTGATGAGAcgttagaaaatgttttagacGTTGCTGCAAAACTAATACTTACCATTCCTCAATCTGATTTACtgGTTTATCCAAAACTATCACAATCATACTTTTCACTATTAGAGTGTTTGGCACAGGATCATATGACCTTTTTGTCTACACTTGATCCAGctatatttttgtacataataaaaagtatatcGGAAGGTCTGGCTGCTGAAGGTATGACGCATTTAACTTCTTCTGACGCTGCAGgTGATACATTGAGACATTGTGATATTTGCAACGAGAATTTTccattagaaatattattgtttgctCATATGCTTcatgttcataaaataaatgataagcAGCAGAAATtgtcaaatttaattcaaaattatgaaacagAAGATTTATTGTACTCATCGGATAGCGATTGTGATTATAGAATTGTAACTGTAACGAAAATAGAAAGATTACCGAAAAAAGATGTAAAAccaacaattaaaaatgaaatgacgGATGCACCAGAAATGATAGAAAATGATAGattagaaataatacaaaatcaataCAAAGAAAATGAGATTATTTGTGATCCAGACATAatgtttgatattaaaaagGAATATAAACACACTGATGAAACGAAATGCGAtgattgtaatattaaatttaaaaataagtacacGTACAGAAGACATATGAAAAATGTCCATGACATTGGTAATATAAGATCTGACAAGGAATTGAATGGCAAACCATCTGATTTTGTGTGTAATATATgcaataagaaatttaaattaaagcattTATTAAAGGCTCATAAGGAAAcgaaacacaataaaataaatataaatttacaaagtaCACAGGAAAATTCAAAGATTATTCAAGAAGTGGCAATTGTATCAGATCATACAGAAAAACTACTTGATGATGATACTGCTGATCAAATGAAAACTTCACAGAAATTTGTTTGTGATATTTGTCAAAAGGTATATAATTCGAAAAGTGGCATCACAAAACATATAAGACAAATTCATATCGGTCCAAATAATTTAGTACCAGCAAAAAAACGATGTCGAGATGAaagtcattataaattttcttgttcaaaatgtggtagaaaaatgtataatgaaaaatataaaaatcatcatgAAACCCATTgctttacatatttatgtagttactgtggaaaatattttaaaaataatgctcGACTAATTGTTCACATACAAGGCGTCCACACAAAAGAGCGGCCATTTTCTTGCACTGTGTGCCCGAAAACATTTTTGGCAAAGTCATTCTTACAAGATCATTTAAAGAGCCATGAAATGATTAATACAGGCAAAAAGGAATTCAAGTGTCCGATCGAAAATTGTGACAGATTGTTTACCCATCAACGATGCATTCCGCAGCATATTAAAGTTATGCATCAAGAAAAACGGTTCGTGtgtaatttttgttcatcCCGACATAGCACCAAGTGTCATTTAGATAGTCACATTCGATTGCATACAGGCGAAAAGCCCTACAAATGCCATGACTGTCCTTTAACTTTTCGCCTTTTATCAACATTCAGAACACATAAAcGAATACATTCTGGCGAACGGCCATACAAATGCACGACATGCCTTAAGacttttataaaatcatacaATCTGAAAACTCATTTAAGAAATCAAAGGAAATGCAAACCACCATTACAgtcaattgaattgatttaa
- Protein Sequence
- MFSINNFKLFLFCFRIQLLHFFYKQYFNYNNNDFKRDGLEDPLDDLAMVQQQLDQLSVIVRCEYDQTCSFLIRTFDQTASTYQELLGNPVNNAIEIAVHESQLTWLVYIIGAAIGGRITFTANDEQDILDGDLVVRVLQLMNLTDSRLPQMGCEKLELSMMSFLDHIRKIYIIEQMQKMKIYKRLAELLGINDEPMLLSVINRKIITNLKFWGQSELIIRKTLNLLNELSVSYSWVRKLVKLDEIQFLLNNHTSEHFSFLGSNVAVSEMRSRSMFYTSLGRLLMVDLGEDEERFYNFMLPLTNSFESIGSMLMDTNTYPSEEAKKALIGLSRDLRGLTFSSSKKNAYMMFFDWIYPDYTPILIRAVELWAHDPQVTTPVLKLFAELVQNRAQRLQFDISSPNGILLFREASKVICAYGNRIMTLDVPKNQQYPLRLKGISICFTMLKAALCGNYVNFGVCKLYGDETLENVLDVAAKLILTIPQSDLLVYPKLSQSYFSLLECLAQDHMTFLSTLDPAIFLYIIKSISEGLAAEGMTHLTSSDAAGDTLRHCDICNENFPLEILLFAHMLHVHKINDKQQKLSNLIQNYETEDLLYSSDSDCDYRIVTVTKIERLPKKDVKPTIKNEMTDAPEMIENDRLEIIQNQYKENEIICDPDIMFDIKKEYKHTDETKCDDCNIKFKNKYTYRRHMKNVHDIGNIRSDKELNGKPSDFVCNICNKKFKLKHLLKAHKETKHNKININLQSTQENSKIIQEVAIVSDHTEKLLDDDTADQMKTSQKFVCDICQKVYNSKSGITKHIRQIHIGPNNLVPAKKRCRDESHYKFSCSKCGRKMYNEKYKNHHETHCFTYLCSYCGKYFKNNARLIVHIQGVHTKERPFSCTVCPKTFLAKSFLQDHLKSHEMINTGKKEFKCPIENCDRLFTHQRCIPQHIKVMHQEKRFVCNFCSSRHSTKCHLDSHIRLHTGEKPYKCHDCPLTFRLLSTFRTHKRIHSGERPYKCTTCLKTFIKSYNLKTHLRNQRKCKPPLQSIELI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -