Basic Information

Insect: Catotricha subobsoleta
Gene Symbol: -
Assembly: GCA_011634745.1
Location: JAABKK010007667.1:48119251-48121199[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.7e-05 0.0056 17.7 0.8 1 23 193 215 193 215 0.97

2 11 0.00062 0.052 14.6 0.2 1 23 220 243 220 243 0.97

3 11 0.0024 0.2 12.8 4.4 2 23 283 303 282 303 0.95

4 11 1 83 4.6 6.8 1 23 313 336 313 336 0.92

5 11 0.0013 0.11 13.6 3.9 1 21 347 367 347 369 0.95

6 11 0.29 24 6.3 1.7 1 23 412 435 412 435 0.97

7 11 5.6e-05 0.0047 17.9 0.4 1 23 462 484 462 484 0.95

8 11 0.00021 0.017 16.1 5.6 1 23 490 512 490 512 0.97

9 11 9.5e-05 0.0079 17.2 0.5 3 23 520 541 518 541 0.96

10 11 0.0041 0.35 12.1 1.6 1 20 547 566 547 569 0.93

11 11 0.048 4 8.7 2.1 1 20 576 595 576 597 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.7e-05	0.0056	17.7	0.8	1	23	193	215	193	215	0.97
2	11	0.00062	0.052	14.6	0.2	1	23	220	243	220	243	0.97
3	11	0.0024	0.2	12.8	4.4	2	23	283	303	282	303	0.95
4	11	1	83	4.6	6.8	1	23	313	336	313	336	0.92
5	11	0.0013	0.11	13.6	3.9	1	21	347	367	347	369	0.95
6	11	0.29	24	6.3	1.7	1	23	412	435	412	435	0.97
7	11	5.6e-05	0.0047	17.9	0.4	1	23	462	484	462	484	0.95
8	11	0.00021	0.017	16.1	5.6	1	23	490	512	490	512	0.97
9	11	9.5e-05	0.0079	17.2	0.5	3	23	520	541	518	541	0.96
10	11	0.0041	0.35	12.1	1.6	1	20	547	566	547	569	0.93
11	11	0.048	4	8.7	2.1	1	20	576	595	576	597	0.92

Sequence Information

Coding Sequence: atgactgACAAATTATGTAGATCATGTTTGTGGGAGAATGAAATatctattgatttatttgatatttatagaaatcatttttatttgccaTCTCTAATTTTTGATTGTACGGGAATAAAGGTGGATCAAAGTGATGAATATTCCAATTGTATATGTGCAATGTGTGCCGACAAATTACtggaattatataaatttcgtttaatgtttattgaatCAGACACAAAATTAAGAgaagaacataaaatatcaaatgtaataaaagaaaCGAGCGAATATGTAACATATTTATGTATCGAACAATTATGTGAAAGCAATCAAGAtgataatgatataaaattctttgatAGTTCCGAAATAActgaagaaattaattttaatattattgaccATGAAAATAATGCTCAAAAACTAATTGACGAGTTCAATGAAACGccaatgaaaatggaaataagcgaaacaaataattttgatactgaaccgattttgattaaaccaaacaatgaaaatgaaaccAACAACCAATCACTAACTAATAATGTTATACAAACAGGTAAAAATGAAACTGAGAATGGAATGTTTGAATGTAAAGTATGTCAAAAACAGTTCTCAAACAATTTAGCTTTAAAAGTTCACTCGAAAATTCACAATGGACGAATGTATAAATGTGATTTATGTCCAAAAACTTTAACCGCTCCTGGATTTTTACGATTACACATGCAAAATTCACATAACATATTTACACCAAAGACAACATTACACAAAAGTAAAGTTAAACTGATAAATGAGGAATCAGTGAAATTAAAATCGCTGGCTATGAGAAAGGAAAAACGTGATGAGCTTTGTTGCGAATGTGATATTTGTCATCAATATTTCTCACGAAAAAGTCTAATTGCGCATATGAAAAcgcatataaaattacattcaaaagAGATAATTCATCAATGTCCTCATTGTCCATTGACATTTTCGTGCACAAAAAATATCCATCGACACGTTGAAATTTATCACACACCATTTGAAAATGAACAGCCTAGTCAGTTTCAATGCGAAGACTGTCCAGAATCATTTAAGCGGTGCATTGAACTGTACGAACACATTAAATGCCATGGAGAttataatgaaacaaaaaatggtTTGGCATTAACATGTGATGAATGTAATCAACAGCACGATACATTAGAAGCGTATGCAGAACATGTCCTGTCTGTTCATAATTATGATAAAGTGAAACCATTTAAATGTCGCTTATGTTCAATGCGTTCATCACGTAAACAAGCTATTTATATGCATGTTCGATCGACACATTTTGGAAATGCTAAACGCATCGttgataatattgataatttatgtTCGAAAGAAACTAAAAAACCAATAACTAAACGATTCCTTTGCACCGTATGTGGTAAAGATGTACGCACAAAAAATGAACTGCAAGTTCATATGTATTCACATTCGGGTGAACGCCCATTCAATTGTCTTGTATGCACTAAATCATTTTGTACAAAACGTCGTCTACGcTATCATATGAGAATTCATTTAGACGAACGTCCTTATGGATGTGATTTATGCTCTAAAACGTTCCGTGATGGTTCCAATTTACGGTCACATAAAATTACAGTTCATACAAATGTGAAAAATCATGTTTGTACTGTTTGCACAAAATCGTTTCATCTAAATGCAACGCTTCGAGAGCATATGTGGGTACATGCGGATGGTAAACGTCCATTCAATTGTAATCGATGTGGAAAAGgatttatgaaaaagaaaaaaatgacagAACATGCCTGTGAGCCATTTGAATTTGttcatatgtaa
Protein Sequence: MTDKLCRSCLWENEISIDLFDIYRNHFYLPSLIFDCTGIKVDQSDEYSNCICAMCADKLLELYKFRLMFIESDTKLREEHKISNVIKETSEYVTYLCIEQLCESNQDDNDIKFFDSSEITEEINFNIIDHENNAQKLIDEFNETPMKMEISETNNFDTEPILIKPNNENETNNQSLTNNVIQTGKNETENGMFECKVCQKQFSNNLALKVHSKIHNGRMYKCDLCPKTLTAPGFLRLHMQNSHNIFTPKTTLHKSKVKLINEESVKLKSLAMRKEKRDELCCECDICHQYFSRKSLIAHMKTHIKLHSKEIIHQCPHCPLTFSCTKNIHRHVEIYHTPFENEQPSQFQCEDCPESFKRCIELYEHIKCHGDYNETKNGLALTCDECNQQHDTLEAYAEHVLSVHNYDKVKPFKCRLCSMRSSRKQAIYMHVRSTHFGNAKRIVDNIDNLCSKETKKPITKRFLCTVCGKDVRTKNELQVHMYSHSGERPFNCLVCTKSFCTKRRLRYHMRIHLDERPYGCDLCSKTFRDGSNLRSHKITVHTNVKNHVCTVCTKSFHLNATLREHMWVHADGKRPFNCNRCGKGFMKKKKMTEHACEPFEFVHM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -