Csub016947.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- Hivep1_1
- Assembly
- GCA_011634745.1
- Location
- JAABKK010000071.1:30587-42390[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 6.5e-05 0.0055 17.7 0.4 3 23 400 420 399 420 0.98 2 8 0.0005 0.041 15.0 1.2 1 23 426 450 426 450 0.91 3 8 0.0002 0.017 16.2 0.4 1 21 856 876 856 876 0.95 4 8 4.1e-06 0.00034 21.5 2.0 1 23 1846 1868 1846 1868 0.99 5 8 1.9e-05 0.0015 19.5 4.7 1 23 1874 1898 1874 1898 0.92 6 8 0.031 2.6 9.3 1.1 2 23 2502 2523 2501 2523 0.96 7 8 0.048 4 8.7 0.7 1 23 2530 2554 2530 2554 0.90 8 8 0.0041 0.34 12.1 2.6 1 23 2575 2599 2575 2599 0.92
Sequence Information
- Coding Sequence
- atgaatCGGTTAACGCGCAACGACGCAACaaatGATCCCGGAGGCGGTGTTGAAACTTTTAACCATAAAATGGAACAGCAATTACATAAAGTTCGAAATCTAGATAATACGAAAAAACAAGTGCCAGTGTcgttaacacaaaaaaatattgatgttatAAATTGCTCTGATGAGGAGCATCTAAATCGTCAGCCACAACCACATACATCAACACTATATAATAGTTCGAATAATTCTACTGATTTAAAGTACctgcataaaaaatttaaacgtaTTGCCAGTGCCACAGTTGATGATAATTTTACAACATCGCATTcaccaatattattatcacaacatcaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaaaatatattagaaacaaTAACATCCAGAGAAACACAACCAATATCCGCAAATatgaatttacaatttaatggaaccgttttaaaatttaatcacgaaataaatacaaatagtaCGCTGGTACATTTAAATGGTAGTGGAGGTTGTGGCGTTGGTGTAAACgctgacaaaaatattttatcaaattcgACTCGATCTCCACCACAAAAACATTATCAACTATTTAATCACCAAGAACAAACTATAAGTAGCAATCAAGAATGTTCCGAAGAAGAAGTAGTTGTTGTCGATGATAATACTGATGATGATATTAATGTTGCTAGtgattattataagaaaaaattaagtgcCAATATTTTAAGAGAACAGCAAGAACAATGTTTTTctcaacaaacaaataaaaatattttatcaacatcatcaacatcttcaacttcattaaatttatcaacacATCAACCATCTAAAATATCGAGACAACactataaacaacaaaatcataGATATAAAAGTGCTTCCTCGTCCTCTTATAAtcatcaacaaaattattattataatcaacgtcatcagcaacaacaacaacaacaacaacaacagcaacaacaacaacaacctaTAGTCATTCTTAGTTCAAGTAGTTCCACAGAAGATCTTCAATATTTACAACAGCAAAGTAGCTCTAATCAAGGAACGTCCAGAACTAGGGAAACTTCATCTCCCACATTATTATCGCAATCATCTTTATCATCACAACGTAGTAacagtaatataaataataataataataataatagcacaCCGGGACGCAATATTTGTCCATATtgtcaattgaattttacaaaACCATCAGTTTTACGTAAACATATCCGTTCCCATACAGGAGAAAGACCTTATCCATGTGTCTCATGTGgttttgcatttaaaactAGAAGTAATTTGTATAAACATTTCAGatcTAGGGCACATGCATTAAGACAAAAAGgcaaaaataatagtaatgatGTACAGCAGCAGCAATCAATAGGAGATTTAGATGATATATCACAAATGTCTGATCAGGAGCATGAACTGAGTAGTTGCAGTACAACGACAAGCTCAGATGTGaTAAGTCGTCCTGCTTCACCAATAGATGATAGAGTTTCTTCGCCTCCATCGGCAAATCAACAGCATCATCTTCAACTGCaacaacaatttattgaaaggCCATATAAACCTAAATTTCATATTGCTGCACTTTATCATCATACCAGTAACAGTAATAGTAGTTGCAGTAGTagttatacaaataataatagtagcCATGCCAGAGATGAAATGTCAAATGATCAGTTATTGgctaataatcaatattatcaGAATCAATATATGCTGCGtggcaatataaataatacttcaACGACCGGAAATTCATCTTCGAATGTCACGTCTTTAAATTCAAGTGTAGCTTCATCTCATCATCCTTtgtcAACACAAAACGTTGAATACTTAAAAGAGCATAtatcaaaaatcatttcacAAAATGAAGCCATAATGGAAGTTGTGGAACCAGCACTACAAaagaaatatcataaaattacaGGCATATCACGTGGTAGTGTAAGTGGCAGTAATATTGGCGAAATACTTACAGCAAATCTACCATCTCCAtcttctaataataatacaaaattgacAGCTGGCTCATTTTGCAAACAATCACAATCAATTCATCAACAACGTGAAGACAATAACTATATAACAACgacaacattaaatattaatagaagtgatattaaaaatgaaaacgttTCAAGTATAGGTGCTGGCCAATCGAATATGCGAAAATTATTACCAACACTTCAGCAACAAGCTCAACAAGTGTTGcaaaaaacattaacaacATTAGACGGTCAAAACCATCAAAATCAATCCCACCAACCACTTAATTTAACATCCGATCCCACAACAAATGTTACCATAAATACGTCTGGTGGtgataatttaagaaaacgaTCTTATAGTACTGCTTCTGGATCGTCATCAGCATCGGTGAATGTTCCTCTTCATGTTGAAACTGCTTCTACTTCAATGCCCCATCAAAATCATCATCCGCAAAATCCTGAACGTTCAATCATAAAATCTTTATTGTTGAATTCTCGAGGTTTAGCCGTGCCAACGGCTGGTGAGGGTGACGATGCTGTTTATACATGTCCATTATGTAAAATCACATTTCGAAGTGCTGATAATTTGCAGTACCATACAAAATGCTATTGTCAAGGAACACCACCTGCATCATCGCAGCAGCAAAACGCCTTACTACAACAACGGAATAATAGTCCACATAGTGCACCAATAAGTCCAGTTGGTTCACCATCGCATAAATACTTTCGgtcaaattcttttaatttatgctTACCAGAAAAATATAGTCCAAATACTTTGGCAAAATTAGCCAGTTCTAGTTTACGCCATCCACATCGTACGCCTTTATCTTTAGCTAAATTGGCTGCCCAACAAACAGCTGGACAAAATCAGAACAAATCATTGCCATCGTTGACATCTTCATCTACATCTGCAATACGTACAAGAcctgaaaatattgtgataaatACGAGTACATGTCCAGCACCTACGCCATTATTAACAGTCACATCGACATTGACGCATCCAACGCTATCAGTTTCATCGCAATGTGTTCAAATAACAAAGCAACTAATAGACGCCTCACTTCCTTCGCCAGGACCTCTATTAGGAAAAACGAGATTAGTTGACACATACAGCACAAATTACGATAATCGAAAAACTGATGACGCCATTGTATCGAACTTTGCGTCAGGTTGTGTTGGTGCCGTAACCTCTACAAACAGTGCATTTATGACAAAGCAAGAACAATTGTCATTTATAACGACAGGCAGTACTGGGACTGATTCAAATACAAAGTTTAAACGTCAACGAATGAGTAGTTttccattatcatcatcatcctcGACTTTTTGTCTTGGTTCTGTAAGGACACCTATCTCATTAGATGCATTAGCATTAGCGCATAAAAATCCCAGACTACAAATGTGTGGtggagaaataaaaattgttgcaCGTAAAGAAGATACAGCACCTAGATTTGGATCATCAGGCGGTTCAATAATATCGATTTCGCCGTCACCCGATTCAATATCAGAACCAAGTCCTATTGGCATACGAACTGGTTTACACTCCGGTGGTTCTATTATTGAAACTCCTACAAAGAAAgcatcttcatcatcatcaccacCTGCACCAGCAACGCCCGATCGATTAACACCGCAATCAGCACTTCATTTAGGTAATATAACACCTTCGTCGCAACACTTAGGAAGCGGAGCTAAgaaacgaaataatttaattggcaATTATTTCCAATTTCCACCAATTAATTCTATTACTGGTTACAATTCATTAACATTACCTTCGCCAGCAGCCATACAACAGCCTACCGTACCAATTGCAATAAATCCAATTGAAGctacaaaaatattccatggaggaaaattaattccatttgTTCCCGGTATTCCTGGTCCTAATTCATTGGTAGTAGCGCCATCAACATCAATGTCATCATATCAAAAAGAATATGCTATGCCCAAATCACCATCTGCAATCCATCATCGTGCACCAAGTccaaatcgaaaaaaaattattccaagTAGTCCGATTGCAATTCGAGCTGTACCAGCTATACCGCAGCAACCAACACCGCTCTCTTCTGGGTTCATAACTAATAAGACTGTATTTACAGTTCCTATAGTAACATCAAATACACTGTCAAAAATATCACCAACTATGTCAAACTCAACACAGCAAATGATTCCAAGCATTATAATTGATGATGACGACaatcaaatttcaacaaaatccattttttttggaatcaaTGGTACCATGGTTAATAATAGCTATTATAATCAACATTATGCACATGGCCACCAACAGTCATTGTGGTCGCCAGCATCAATCACACCAAAACAGTTAGAAtctggaaaaaaaacatttaactttACACGAATTGCAGATAATTTAAGtccattaaaatcaatttcgtCAGGCATCACATCAACGCCATCATCAATATCGCAAAATAAATCTACTGAAAATGTTACGTCTAATACTCAAACAGCGGAATTacggtattttaattttgaaaacttaATTCCAAAACCAGAAGTTATTATGCGACCAAAGCAGCAACGTTTATGTAGCGGTGGCATTTCACCTCTACATATCGACGTATCATCGTCATCTGTATTATCGACACCATTGATAACCACACCAATACCAACACTTGTTTTACCAACGACTGAAAGTCAATCACTAAATAATAGCTCCAGTTCTGATTATCTAAACGATCCTCTACTTAAATCAACCACAAtgacaacaacaaccacaacTACGACAACAACAAGGTTTCTTCGGCCAAGCAGTTTACCACTAAAACCAGGCACATTTACTCCTAAACGACATCATGGAATTACACCAACAGCCAATACATTACCATTAATCTCACCAGAAACTCCGCGACCATCTAAATCATGCGTTCAGTTGTATCTAAATGGACATGCTTACACATATCTTGGCCTGAAATGCAGTACAAAAACATTCTATTGCACTGTTAATAGGCCACAACCCGTTCATTTTACAAACCAAcacaaattatcaatttatagtAACTGGCAAATATGTGCCGAAAATAATCCACATCCTTTGGGTTTATCGCCAAAGGAAGCAATGTCATTATATGATTCCCGACAACGTATGCAACAATGTCGTCGTACTGGAAAATATACAGTTGCAAATAGTTCATCGAAATGTACAACGTTGCATTCTCAAACATTGATTTGTACAACACCATTTGATAAccgtataaataaaattaatcaagaaACATTAGAAATTGAACAATCAAAAAACGTATTATCAAGCTCTGGGATACCCTCAATTGAAGTAAGCACAGTTGATTCTATATCAACGTCATCAACAATCAAACATCAACATCAATCCTTAAAATCATCTGACGGTTCATTATCACCAACAGCCACAACATCATCATCCATAACTACAATAATCCCTGTCGTGCCCGGAGGATATGAAAGTAACGAAGATTATACATATGTTCGGGGACGTGGACGTGGGCGCTACGTATGTTCTGAATGTGGTATTCGATGTAAAAAACCATCAAtgcttaaaaaacatattagaaCACACACTGATGTCCGCCCATATACCTGTCAACATTGTTCATTCAGCTTCAAGACGAAAGGTAATCTAACAAAACACATGAAATCGAAAGCCCATTATAAGAAATGTGTTGAGCTTGGACTAAATCCACTTCCATCTGCTATTGATGATGATTACTGTTTAGATGATGACCAAGAAGATTCTTCAATGACATCATCCTGTGGAGAACGTACATCAAATATACCTGATTGTGATGATGATTCAGATACAGATGATATAAGTGATGGCGATGATGGTGAAAATGAAAGTAGTGatacTGATGATGCCAAATTTCGACTACCTGAACATGAAGCGGCACGATGTTTACTATCTTTATCGCAGACTCCACCAAATTGTCAAAATGCTCTACCATCacccaatttattaatacctGGCCATCCAATGACATATCCATACATTGGTGGGGATCAACATTATCAATCTGTTGCATCATCATCACAACTACAAATACAGGAATATGGAAATAATGCTGTACGACgtcaaataacatttattccACCTCCACCATTGTTGTTAGTACACTCCCAATCAACCGGCGCATTTGAAGATTTTTCATCTCCAAAACCTGATCAATTCTATTCAAGCTTCAAACACCAACAAAGATCAGCAATATCCCCGCgacaaaatcaacaaaattcgTCAATGccatttcaaatagaaaacagCAGCAATATGATGATGCCAATAGATTTAACAAAACCGCGGAATGATGACGAAATAAATAAGCGAAATAAATTACcaattcaaatatcatcaacaaTACAGACTACGACTACAACAACCATATATGGTGAGTCGACTAGCctgttaaattcattaatgtCAATAACTGATAAAGTTCCATTGATAACGTCACCGTTAATATCAAATGCTGAATTCGCAATGAATGCAAATATCGATCCCACAGTTGTTAAAACTAATAGTGATAATGACATTCTTGGTCTGCGTACCATTACAACGAAAATTTCCGGTATTATTCCCAAAGCATCTATATCTACCAGTAACATTTTCAGAATGGGATTATCTGAGAATGACGTCAATAATCAGTCAACTGATAATATCGATGCAAAATCTGGAATGGACACATTAGCTGAAATCGCCGCtagttcaataaaattagataCAAGTGGGTCAAAATCGCCAACGCTATGTACACAAAATGCTAGATATCAAAAAGGTCAAATACAAGTAGTACAAACAACAGTTGCAATAACTGCTTCTTTATCTGCGACTGCAATAACATTAACTACATCAACTACGTCAATGACATCAACGACATCAACGACATCAACGACATCAACGACATCAACGACATCAACGACATCAACGACATCAACGACATCAATGACATCAATGACATGTAGTGTTAGTAATAGTAATAGTAATGGTAATAGTGCAAAAAGTGTAGCTTCtgagtatttaaaaatgactTCAGCTGAATATTTGAAAGCTCACCAACAAAATCCTCCAAACAGTAGTAGCTCAAACGATacaactatttataataataataataataataataataacaataatattgatcGAGAAGATAGTTCTGATAAAACAGCAGCTGTCATAACAGGAATAGCTGAAGATAGTTGTAGTTCATCTGATCAAGACAATTACGAGAATAATTCGAAATTTCATTCATcatcaataacaacaacatcagCATTAGATCGTGGAACATCCACGTCGGCTACAGCACTTTTATCTGCCCGAACAGTAGTCGTCGGTGAAGAtggatttaaaacaaaatcatcaaTTTCAAAAGATCTAACAGTAGTCTCATTTCCACGTGGTAGTGGTACTAGAGCAACTGCTCGTGCTAATGCTGCATTTATACAAGAAGATGGTGGTCGATCAGTTTGTGCAATATGCTCAAAAACGTTCCTTCAAAAACATCAAATGGTTCTTCATATGAATATCCATTACATGAATCCCCGGAAATTTCGCTGTGAACCTTGTGCCGTTAATTTTCGTTCACAAGGACATTTACAAAAGCATGAACGTTCTGAAGCACATAAAACTAAAGTGTTAATGACAACCACATTTGGTCAAGCCACTACTCGAAATCCGCGTCCATTTGAATGTTCCGATTGTAAAATTGCGTTTCGTATCCATGGTCACTTAGCCAAGCACTTGCGTTCAAAAACACATGTTCAAAAATTAGAATGTTTACAAAAGTTACCGTTCGGAACATATGCAGAAATTGAACGAGCTGGTATTAGTTTAACTGATATTGATACAACCGATTGTGATAATTCACTAGCTAGTTTAAAAGTGTTAGCACAAAAGCTACTTCTAGATAAAGAACCATCATCCGGTGATAAAGTGATTGCCGCTGGCGGACAATGGAATCATAATCAAACAATTCAGCcacatttttcttctattgGATATCGTGATCGTACTGAAAGCAATAGTGAAGATGGTGAACCGATTGGTAGTCCAATTGGTACTGTTTCCATTGATGATGCATCTATTAACACAAATGTTCCAAAGGAGGTCAgtgatatttcaataaaaaatagaagctcTAATTTTAGTAGCGaggaatttaatattgaaccTTCTTTACCAATATCTTCATCACCCCCAAATAATCAGGAAAGTATTGTAATAACAACCGCGCCTTTTTCAAATACTGATAGTGAAGGAgcaaatattgcaataaaacgacgaaaaattgaagaaaatattgatgctCGTAGTGGTGATACTGAAAATGCTACGTTAATAATCTCATCGCaatag
- Protein Sequence
- MNRLTRNDATNDPGGGVETFNHKMEQQLHKVRNLDNTKKQVPVSLTQKNIDVINCSDEEHLNRQPQPHTSTLYNSSNNSTDLKYLHKKFKRIASATVDDNFTTSHSPILLSQHQQQQQQQQQQQQQQQQNILETITSRETQPISANMNLQFNGTVLKFNHEINTNSTLVHLNGSGGCGVGVNADKNILSNSTRSPPQKHYQLFNHQEQTISSNQECSEEEVVVVDDNTDDDINVASDYYKKKLSANILREQQEQCFSQQTNKNILSTSSTSSTSLNLSTHQPSKISRQHYKQQNHRYKSASSSSYNHQQNYYYNQRHQQQQQQQQQQQQQQQPIVILSSSSSTEDLQYLQQQSSSNQGTSRTRETSSPTLLSQSSLSSQRSNSNINNNNNNNSTPGRNICPYCQLNFTKPSVLRKHIRSHTGERPYPCVSCGFAFKTRSNLYKHFRSRAHALRQKGKNNSNDVQQQQSIGDLDDISQMSDQEHELSSCSTTTSSDVISRPASPIDDRVSSPPSANQQHHLQLQQQFIERPYKPKFHIAALYHHTSNSNSSCSSSYTNNNSSHARDEMSNDQLLANNQYYQNQYMLRGNINNTSTTGNSSSNVTSLNSSVASSHHPLSTQNVEYLKEHISKIISQNEAIMEVVEPALQKKYHKITGISRGSVSGSNIGEILTANLPSPSSNNNTKLTAGSFCKQSQSIHQQREDNNYITTTTLNINRSDIKNENVSSIGAGQSNMRKLLPTLQQQAQQVLQKTLTTLDGQNHQNQSHQPLNLTSDPTTNVTINTSGGDNLRKRSYSTASGSSSASVNVPLHVETASTSMPHQNHHPQNPERSIIKSLLLNSRGLAVPTAGEGDDAVYTCPLCKITFRSADNLQYHTKCYCQGTPPASSQQQNALLQQRNNSPHSAPISPVGSPSHKYFRSNSFNLCLPEKYSPNTLAKLASSSLRHPHRTPLSLAKLAAQQTAGQNQNKSLPSLTSSSTSAIRTRPENIVINTSTCPAPTPLLTVTSTLTHPTLSVSSQCVQITKQLIDASLPSPGPLLGKTRLVDTYSTNYDNRKTDDAIVSNFASGCVGAVTSTNSAFMTKQEQLSFITTGSTGTDSNTKFKRQRMSSFPLSSSSSTFCLGSVRTPISLDALALAHKNPRLQMCGGEIKIVARKEDTAPRFGSSGGSIISISPSPDSISEPSPIGIRTGLHSGGSIIETPTKKASSSSSPPAPATPDRLTPQSALHLGNITPSSQHLGSGAKKRNNLIGNYFQFPPINSITGYNSLTLPSPAAIQQPTVPIAINPIEATKIFHGGKLIPFVPGIPGPNSLVVAPSTSMSSYQKEYAMPKSPSAIHHRAPSPNRKKIIPSSPIAIRAVPAIPQQPTPLSSGFITNKTVFTVPIVTSNTLSKISPTMSNSTQQMIPSIIIDDDDNQISTKSIFFGINGTMVNNSYYNQHYAHGHQQSLWSPASITPKQLESGKKTFNFTRIADNLSPLKSISSGITSTPSSISQNKSTENVTSNTQTAELRYFNFENLIPKPEVIMRPKQQRLCSGGISPLHIDVSSSSVLSTPLITTPIPTLVLPTTESQSLNNSSSSDYLNDPLLKSTTMTTTTTTTTTTRFLRPSSLPLKPGTFTPKRHHGITPTANTLPLISPETPRPSKSCVQLYLNGHAYTYLGLKCSTKTFYCTVNRPQPVHFTNQHKLSIYSNWQICAENNPHPLGLSPKEAMSLYDSRQRMQQCRRTGKYTVANSSSKCTTLHSQTLICTTPFDNRINKINQETLEIEQSKNVLSSSGIPSIEVSTVDSISTSSTIKHQHQSLKSSDGSLSPTATTSSSITTIIPVVPGGYESNEDYTYVRGRGRGRYVCSECGIRCKKPSMLKKHIRTHTDVRPYTCQHCSFSFKTKGNLTKHMKSKAHYKKCVELGLNPLPSAIDDDYCLDDDQEDSSMTSSCGERTSNIPDCDDDSDTDDISDGDDGENESSDTDDAKFRLPEHEAARCLLSLSQTPPNCQNALPSPNLLIPGHPMTYPYIGGDQHYQSVASSSQLQIQEYGNNAVRRQITFIPPPPLLLVHSQSTGAFEDFSSPKPDQFYSSFKHQQRSAISPRQNQQNSSMPFQIENSSNMMMPIDLTKPRNDDEINKRNKLPIQISSTIQTTTTTTIYGESTSLLNSLMSITDKVPLITSPLISNAEFAMNANIDPTVVKTNSDNDILGLRTITTKISGIIPKASISTSNIFRMGLSENDVNNQSTDNIDAKSGMDTLAEIAASSIKLDTSGSKSPTLCTQNARYQKGQIQVVQTTVAITASLSATAITLTTSTTSMTSTTSTTSTTSTTSTTSTTSTTSTTSMTSMTCSVSNSNSNGNSAKSVASEYLKMTSAEYLKAHQQNPPNSSSSNDTTIYNNNNNNNNNNNIDREDSSDKTAAVITGIAEDSCSSSDQDNYENNSKFHSSSITTTSALDRGTSTSATALLSARTVVVGEDGFKTKSSISKDLTVVSFPRGSGTRATARANAAFIQEDGGRSVCAICSKTFLQKHQMVLHMNIHYMNPRKFRCEPCAVNFRSQGHLQKHERSEAHKTKVLMTTTFGQATTRNPRPFECSDCKIAFRIHGHLAKHLRSKTHVQKLECLQKLPFGTYAEIERAGISLTDIDTTDCDNSLASLKVLAQKLLLDKEPSSGDKVIAAGGQWNHNQTIQPHFSSIGYRDRTESNSEDGEPIGSPIGTVSIDDASINTNVPKEVSDISIKNRSSNFSSEEFNIEPSLPISSSPPNNQESIVITTAPFSNTDSEGANIAIKRRKIEENIDARSGDTENATLIISSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -