Csub000070.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- -
- Assembly
- GCA_011634745.1
- Location
- JAABKK010006548.1:3437-7602[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.62 52 5.2 0.5 1 23 40 63 40 63 0.95 2 20 0.6 50 5.3 0.2 2 23 67 89 66 89 0.94 3 20 3.7 3.1e+02 2.8 2.6 2 23 93 115 93 115 0.94 4 20 2.5 2.1e+02 3.3 0.2 2 11 231 240 230 243 0.87 5 20 0.026 2.2 9.5 0.3 2 21 257 276 256 277 0.93 6 20 0.00013 0.01 16.8 3.1 1 23 498 521 498 521 0.97 7 20 0.042 3.5 8.9 1.8 1 23 528 550 528 550 0.97 8 20 0.42 35 5.7 2.4 1 23 565 588 565 588 0.95 9 20 0.00034 0.029 15.5 4.3 2 23 598 620 597 620 0.90 10 20 0.00037 0.031 15.4 0.5 1 23 631 654 631 654 0.98 11 20 0.014 1.2 10.4 2.2 2 23 692 714 691 714 0.96 12 20 0.0053 0.44 11.7 0.5 2 23 730 752 729 752 0.96 13 20 0.018 1.5 10.1 0.9 1 23 758 783 758 783 0.93 14 20 8.1e-06 0.00068 20.6 0.6 1 23 788 810 788 810 0.98 15 20 1.8e-06 0.00015 22.7 4.8 1 23 815 837 815 837 0.98 16 20 0.0024 0.2 12.8 4.0 1 23 846 868 846 868 0.98 17 20 0.0027 0.23 12.6 2.3 1 23 874 897 874 897 0.95 18 20 0.00086 0.072 14.2 0.5 2 23 904 926 903 926 0.95 19 20 0.0048 0.4 11.9 0.3 3 23 948 967 947 967 0.97 20 20 8.5 7.1e+02 1.6 0.8 2 23 973 995 973 995 0.93
Sequence Information
- Coding Sequence
- atggtattttgtagcaaaataagtacatatatcaTGGAAAGCAATGAAAAAACGGAATTGATATCAATTCCCCAAAATGGATTGAACacaatgaaaatcaaaaagaatgGACAAAGTTATAAGtgttttatatgtgaaaatgtatttctatcAGCTATCAAACTCACATTGCACTATGTGACATATCATCAATTAAAATACTGTTCTATCTGTACAATATTATTTGGCAATGAGATAGATTTGAAATTGCATAAAAGTGTTGAACATATAATTGAAAAGTGCACAATATGTTCATGTGAACGAAAAAAtcttaacaaattaaatgagcATTATTTGCAAGCTCATTCAATGAAACGATGTCCAATTTGTAAGATTTTGATTCATCCAATTGATAAATATGAACAACATATTACAGAACAGCATCAGGCTGTTAATTGTAAACtcgatttagaaaatataaaagacaTTTACGTAATTGAAACACCACGTAAGGAATTCTTCAATTGCCATTTGTGTTCGTGCCGATACAaagtcaataaattttttggacACTTTTTGTTCTATCACCATTTACCTGTTTCTCATCTATTAGATCGAATAAATTGTCACGCAGATATTTTGCAgttaatatcaatatcattAGAGATAAATATTCCAAATCATGGTAGTAttgaagaattaaataaaattacttgtGAAATTTGCAACCATAAATTTTCGATGAATGgaccaaaattatttcacaaagTATATTGCCAGGGATTTAAGTATTGCACAATttgtaaaaacttttttgaaaattcggaagaattaaatattcataaaaatatcgtTGGTGTTGATAGTGAATTAGTGTCAACAGAAGAACATTTGATATACAAGGATAGTTTAGGCAATGACCTGGGTCAAGAATCCTGTGAATTCTGTGATAAACAAGTACCAATGGATGCTAATCATGTTCAACAATACCATAACGTAACTACTAACATATCAATTAATAACTTAAACACATTATACCGAGTGGAAAATTCATCAACTAATTCAGATGATAAATATAGTTGTATTCTTTGTTCGAGCGATATAAGCGATTTTAtaacaaacataaacaattttgttgaacattatattttttcacataatttttgcCAGACagctttaataaaaatattagttaaatatgATATCAAATATGAATCTtccaaacataaaaatgatactGTCGttgaaactgaaaatatttttgaacgtTTTACcgaatttcttgaaaatgacaataaaGGTTTTATAGATTTTGACACACAGATGGTTAAGTGCATATTTTCATCAGAGGATGAAGAATTATCAGCTGATGATCAAGATAATCAACCAAAATGGAAgtcaatcaaatataaaaaatatatttgcactTTTTGTAAAGCAAAGAATATATCGAAACATGCGCTAGTATTTCACATGAACAAATGTCATGGATTTTTACACAAAGATATTGAATTTCGATGTGatatttgtaaaagaaaatttacagttattaataatttgcgAAAACATAGAAAGAGCTATCATCCAAAAAATTCCGACTTATATAATTGTACATTTTGTTCCTATACATCAAATCGATTAACTAAATTGAGGGAACATATAAGTGAACATGTAGAAATAGCAAGTAATCCATGTACGTTAAACGAAATGGGATATAATTGTCGATATTGTCATAACATATTCTGGACTAatgataaattgaatgaaCATTTATTGAACAGACATTCCGAGAAGGTTGGTGATTATTTTATGATGTGTCATATTTGTGGTGCCTCGTTTACTAATAAGACTTCGTTGAGACACCATACATCTTTTAAGCATTCAAATGAGGAACAAATCGGCCAgttattatttcaatgttcTATTTGTAAAACAGCATATTCAAAATTGGATGATGTTCGTTTGCATATGAATAAAGTgcataaaacttataaatccATGTTCTGTTCTGTAGAGTCATGTCGCTTTCGTGTTGCCGATGCAGTGAATTTACAGGAACATAACGAAAAAGTTCATAAATCATTAAAGAAATTGAAGTGCAATCTTTGTTATCGAACATATAAAACTAAAGAATATGCTGCTAAACATTACCAAAAATATCATGAAGATCAGAAATCAAATTCCTGTGATAAGAGaaCCAAAGCATTAAAATGCGTTGAATGTGATGAAAAATTCGAAACAAATGACAGTAGAAAGCTACACTATAAAATCGACcataatgatattaatatgtatagatGCAAGCAACCGGATTGTAACATggaatttcaaacaaaatttcgaTTAAGAACTCATATTGTAAATGTACATGAAAGTAGAATATTTACATGTGACATTTGTAAAAGGGAATTCaatcgaaaagaaaatttactaGGACATATGTCTATACATCGAGAACCACGTCATACATGTTCGTTTTGTTTCAAAGCATTTgctcaaaaatcaaatttgcgACGTCACTTACGTACTCATACTGGCGAGAGTTTAGAAAAACCGTTTACGTGCTCATATTGCGGCAAaacatttgcatataaaacattacatttaaatcacGAAAGaacgCATACTCGTCTTGATTTACATGATTGTCCGTTTTGCTCTAAATCGTTTGTTATGcaagtgaaattaaaatatcatgttCGTTTGAAGCATACGAAAAAGAAATTGCTCACGTGTGattattgtaaaaaacaatttccatACAAATCTCCTTTAGTTGATCATCTTTTATCCAGGCATACAGACATTGCACCAACgagaaaacaacaacaaagaagtGAAAGATATACTAAAAAAGAACCATGTTCAATATGTTCTAAGGATTTTACCCTAAGTTACATGGCAAATCATATGAAAGTTCATATACATGACATAGCGCAGtgtcTTCTATGTGATTTTCAAActtcaaatatgaataaaatcaataaacatcTTGTTAAAATCCATGGAATGTGTAATGATGAAATATTACTTGAGCAATATAAACGAATAAAAACTCAAAgggaaattataaaaagtttacTATCAGAAAATCTgaccaaaataaattctaataacaAGAATATGAACGGTAATGAAAATCCAGATTtagataataatgataatgcaaattttaaaaatattcaaaactttCATATAGTAGTTAAATTAGAAGATGAATTGCAAATTAAtgaatag
- Protein Sequence
- MVFCSKISTYIMESNEKTELISIPQNGLNTMKIKKNGQSYKCFICENVFLSAIKLTLHYVTYHQLKYCSICTILFGNEIDLKLHKSVEHIIEKCTICSCERKNLNKLNEHYLQAHSMKRCPICKILIHPIDKYEQHITEQHQAVNCKLDLENIKDIYVIETPRKEFFNCHLCSCRYKVNKFFGHFLFYHHLPVSHLLDRINCHADILQLISISLEINIPNHGSIEELNKITCEICNHKFSMNGPKLFHKVYCQGFKYCTICKNFFENSEELNIHKNIVGVDSELVSTEEHLIYKDSLGNDLGQESCEFCDKQVPMDANHVQQYHNVTTNISINNLNTLYRVENSSTNSDDKYSCILCSSDISDFITNINNFVEHYIFSHNFCQTALIKILVKYDIKYESSKHKNDTVVETENIFERFTEFLENDNKGFIDFDTQMVKCIFSSEDEELSADDQDNQPKWKSIKYKKYICTFCKAKNISKHALVFHMNKCHGFLHKDIEFRCDICKRKFTVINNLRKHRKSYHPKNSDLYNCTFCSYTSNRLTKLREHISEHVEIASNPCTLNEMGYNCRYCHNIFWTNDKLNEHLLNRHSEKVGDYFMMCHICGASFTNKTSLRHHTSFKHSNEEQIGQLLFQCSICKTAYSKLDDVRLHMNKVHKTYKSMFCSVESCRFRVADAVNLQEHNEKVHKSLKKLKCNLCYRTYKTKEYAAKHYQKYHEDQKSNSCDKRTKALKCVECDEKFETNDSRKLHYKIDHNDINMYRCKQPDCNMEFQTKFRLRTHIVNVHESRIFTCDICKREFNRKENLLGHMSIHREPRHTCSFCFKAFAQKSNLRRHLRTHTGESLEKPFTCSYCGKTFAYKTLHLNHERTHTRLDLHDCPFCSKSFVMQVKLKYHVRLKHTKKKLLTCDYCKKQFPYKSPLVDHLLSRHTDIAPTRKQQQRSERYTKKEPCSICSKDFTLSYMANHMKVHIHDIAQCLLCDFQTSNMNKINKHLVKIHGMCNDEILLEQYKRIKTQREIIKSLLSENLTKINSNNKNMNGNENPDLDNNDNANFKNIQNFHIVVKLEDELQINE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -