Basic Information

Insect: Catotricha subobsoleta
Gene Symbol: -
Assembly: GCA_011634745.1
Location: JAABKK010006794.1:1879-3495[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.025 2.1 9.6 0.0 1 23 21 43 21 43 0.98

2 12 0.0021 0.18 13.0 0.5 2 23 125 146 124 146 0.97

3 12 0.00019 0.016 16.3 0.9 1 20 152 171 152 173 0.95

4 12 0.08 6.7 8.0 0.1 3 23 260 280 259 280 0.94

5 12 0.00056 0.047 14.8 0.0 3 20 288 305 286 307 0.93

6 12 0.00085 0.071 14.2 5.2 1 23 343 365 343 365 0.98

7 12 0.00069 0.057 14.5 0.5 1 23 373 395 373 395 0.95

8 12 0.1 8.5 7.7 3.7 1 23 401 422 401 422 0.95

9 12 7e-05 0.0058 17.6 3.5 1 23 428 450 428 450 0.98

10 12 0.0054 0.45 11.7 1.1 1 23 456 479 456 479 0.96

11 12 0.0034 0.28 12.3 1.9 1 23 485 507 485 507 0.96

12 12 0.11 9.4 7.5 0.2 1 19 512 530 512 535 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.025	2.1	9.6	0.0	1	23	21	43	21	43	0.98
2	12	0.0021	0.18	13.0	0.5	2	23	125	146	124	146	0.97
3	12	0.00019	0.016	16.3	0.9	1	20	152	171	152	173	0.95
4	12	0.08	6.7	8.0	0.1	3	23	260	280	259	280	0.94
5	12	0.00056	0.047	14.8	0.0	3	20	288	305	286	307	0.93
6	12	0.00085	0.071	14.2	5.2	1	23	343	365	343	365	0.98
7	12	0.00069	0.057	14.5	0.5	1	23	373	395	373	395	0.95
8	12	0.1	8.5	7.7	3.7	1	23	401	422	401	422	0.95
9	12	7e-05	0.0058	17.6	3.5	1	23	428	450	428	450	0.98
10	12	0.0054	0.45	11.7	1.1	1	23	456	479	456	479	0.96
11	12	0.0034	0.28	12.3	1.9	1	23	485	507	485	507	0.96
12	12	0.11	9.4	7.5	0.2	1	19	512	530	512	535	0.79

Sequence Information

Coding Sequence: ATGTCTCGAATTCAATGcggtaatatatttaaaaccagtaatgataaaaatcgttatatttatgtttgtaaCGTTTGTGCATTAGAGTTTGAAGGTAGCGAGCAATTTGAAGAGCATGTAATTATGCACTTTTTAGAACCAATTGTTGTCGAAGCAAAAATGCAACTCATCGAAACCATTAATGATTTAAACATTAAGACAGAATTTCAGGAAGATAATAATGAATCAATCGTAGATGGTGAATGTTTTAGTTGGCAAAATGTTTCGCGAAAACACACAAATGTTAAATGTGATTGTTGCAACAAATCATATGCTTGCAATGGTCTTAAGAAACAACATCTCCATGAACAATATCAAATTGATGATCAGAAAACATGTAATATTTGTCCAAGTTATTTTCGAAGAGCCCGCGATTTGGATGCACATAAAAAAGTACATGgcctacaaataaaatttcaatgcgAACATTGTTTTGAGGAATTTGCGACCAATGCGAAATTGAGAAAACATCAATCTGAAAATGTTGCGATTAATTGGCTTCCGAAATCAATGAAaatcgtaaaattaaaaaatgataaaatcgaTTCGATAAATCAggagaatattaaaatgcagAACCACAATGGCATCAATGATGTTGAGAAAGATGAGCTTGAAATCAATGTTAAAGAAAATCGAAACATATTATGTGAATGTTGCAACATTTATTATGCTTGTAATGGACTTAAAAGACAACATGCTAATAAGCTAATCGAATTAAATccattgcaaaatatttgtgatttgTGTCCAGCTCAATTTGAAACAAATCGTGATATGGAAAATCATAAAGTAATACATGATTTGccgaataaaattatttgtccTTATTGTACAGAAGTGTTTGAAACAAGCGATTCTCTCTATATCCACATTACGATATCAGATAACAAAATGCCAGTCATTAAAGCAAATGCAACAAAACCATTGCCACGTAAACGAAATTCACGAAGCAATCTGCCGAAAGTTCCAAAAGAGAAGCAAACCTTTACTTGTGATATTTGTTTCAGACGATATTCAtactttcataatttaaaaaatcatttggaGAAACATGCCAAAAAATTGATAAGCAATTATGCATGTGAGATATGTGGACGtgaatttaaaaccaaaaatattttagtcagACACAATTACACGCACACCGGAGAAAAAGCATTTCATTGTCGACTGTGTGGCAAGAATTTTTCCAAAGATTATAAAAgcgttcatttaaaaattcataaaacggAAAAAACGCATCAGTGTACTACGTGTGGTGTTCGATTCTACACAGCTGGACATTTGGGCACGCACATGAAACgacataataacattaaaaatcataaatgttCAATATGCGATCGATCATTTCTATTTCCTGCTGAACGAAATGATCACATACGTAGTTCTCATACCGGCGATCGGCCATTCAGTTGTGATGTGTGCAGTAAATCGTTTTTGCGACGAAAAACATTAAGAGAACATAAACTATTGCATGGCGAGAAACGTTTTCGTTGCAGATATTGTGATTTAGTGTTTGCCCAAACTGCGGGACGAAGAGGTCATGAAATACAAGTACACAATGCAgcttaa
Protein Sequence: MSRIQCGNIFKTSNDKNRYIYVCNVCALEFEGSEQFEEHVIMHFLEPIVVEAKMQLIETINDLNIKTEFQEDNNESIVDGECFSWQNVSRKHTNVKCDCCNKSYACNGLKKQHLHEQYQIDDQKTCNICPSYFRRARDLDAHKKVHGLQIKFQCEHCFEEFATNAKLRKHQSENVAINWLPKSMKIVKLKNDKIDSINQENIKMQNHNGINDVEKDELEINVKENRNILCECCNIYYACNGLKRQHANKLIELNPLQNICDLCPAQFETNRDMENHKVIHDLPNKIICPYCTEVFETSDSLYIHITISDNKMPVIKANATKPLPRKRNSRSNLPKVPKEKQTFTCDICFRRYSYFHNLKNHLEKHAKKLISNYACEICGREFKTKNILVRHNYTHTGEKAFHCRLCGKNFSKDYKSVHLKIHKTEKTHQCTTCGVRFYTAGHLGTHMKRHNNIKNHKCSICDRSFLFPAERNDHIRSSHTGDRPFSCDVCSKSFLRRKTLREHKLLHGEKRFRCRYCDLVFAQTAGRRGHEIQVHNAA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -