Basic Information

Insect: Catotricha subobsoleta
Gene Symbol: RREB1_1
Assembly: GCA_011634745.1
Location: JAABKK010000608.1:25642-30815[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0001 0.0083 17.2 0.2 1 23 102 124 102 124 0.98

2 13 0.00025 0.021 15.9 0.1 1 23 133 155 133 155 0.98

3 13 1.3e-05 0.0011 20.0 7.2 1 23 161 183 161 183 0.99

4 13 0.031 2.6 9.3 1.0 2 21 292 311 292 315 0.91

5 13 0.79 66 4.9 0.3 1 21 358 378 358 379 0.91

6 13 0.0095 0.8 10.9 0.1 1 23 527 549 527 549 0.97

7 13 3.4e-05 0.0029 18.6 0.9 1 23 558 580 558 580 0.99

8 13 0.00028 0.024 15.7 2.8 1 23 586 609 586 609 0.97

9 13 0.001 0.085 14.0 2.1 1 23 941 964 941 964 0.95

10 13 9.3e-05 0.0077 17.3 0.3 2 23 1270 1291 1269 1291 0.97

11 13 0.16 13 7.1 6.3 1 23 1297 1320 1297 1320 0.97

12 13 0.091 7.6 7.8 1.1 3 23 1453 1473 1452 1473 0.91

13 13 0.028 2.3 9.5 5.3 1 23 1479 1501 1479 1501 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0001	0.0083	17.2	0.2	1	23	102	124	102	124	0.98
2	13	0.00025	0.021	15.9	0.1	1	23	133	155	133	155	0.98
3	13	1.3e-05	0.0011	20.0	7.2	1	23	161	183	161	183	0.99
4	13	0.031	2.6	9.3	1.0	2	21	292	311	292	315	0.91
5	13	0.79	66	4.9	0.3	1	21	358	378	358	379	0.91
6	13	0.0095	0.8	10.9	0.1	1	23	527	549	527	549	0.97
7	13	3.4e-05	0.0029	18.6	0.9	1	23	558	580	558	580	0.99
8	13	0.00028	0.024	15.7	2.8	1	23	586	609	586	609	0.97
9	13	0.001	0.085	14.0	2.1	1	23	941	964	941	964	0.95
10	13	9.3e-05	0.0077	17.3	0.3	2	23	1270	1291	1269	1291	0.97
11	13	0.16	13	7.1	6.3	1	23	1297	1320	1297	1320	0.97
12	13	0.091	7.6	7.8	1.1	3	23	1453	1473	1452	1473	0.91
13	13	0.028	2.3	9.5	5.3	1	23	1479	1501	1479	1501	0.99

Sequence Information

Coding Sequence: ATGGATCGAAGATTATCGACAAATTCTGAGTCATCTGTTGAACCAATGGATATAAGTGGTAAAACAACAAGTAGCACGGATGTAACGAATTCATCAATAGCACCGAAAAaaaataatatgatggTGATGCgaaaaaaatttcgttttgCCAACAACGAACGAAtgccaaataataaaaataataataataattcgcaatatatttatgataaagtAGAAGCAACTACCACGACTGGATCAAGATTACAACATCGAAATGATAATAGTGAAATTGCAGATGCCAATATTAATACAACTGCGCAATACAGTTGTCCAATATGCGGTGTTAGTTCACCGACACAACAtgaatttactgaacatattcGAGGACATAATAATTCCGATGGAAGCCAAAATTACACTTGTCAAATTTGCTTTAAGGTTGTATCTTCGGCTTCATCATTAGATCGTCATGTCCTCGTTCATACAGGTGAGCGTCCATTTACCTGTAAATATTGTCATGTTACATTTACAACGAATGGTAATATGCATCGCCATATGAGGACTCATAAGCATCGAGATGGTGTCAGTAGCGGCGGCAATGAGCAATATGAAAGTGATGGATCCACTGATTCAAGTGCAAGTAGCTCAAATAATAACTATCACTCAGTGGATGGAAAACgtaaaataattgatgatgATTATTCAACAACTAGTCTAAAGCGAAGACTGAAAACtattaacaacaataacaatattattaataataactctCTGAACAATAGTAGTGCTCCGACACAACGATTTTGTTGTCCAGTATGCGTTCGCAATGATTTTCCAAATATGATCAGCTTAGAAAATCACGTTGACAAGGAACATCCAAGCATTCAAGCTAAATGTCGATATTGTGAAGTTgtattcaaaagttataaagCGTTGAATGCTCATAAATGTGGCGCAGGACATAAGGCGCCACATATAACCCAAGGTTTTAAGGACATAacatttgttgatttttcaaGTGAGAAATTTCCGCTTATCGCCAAATCAATGTGCGAACAGAGTATCCGAACACCTATAACTAATCAGAAATTCGAATGTTCAAAATGTTATCGTGCATTTCCATGTGCCAGTGCTGTCGAAATACATATCAAGAGTTGTGGAGTTGTTATGACAGAGACCCCGCAAGATTATTCAGTAAGAAAAAGGTTGTCCAGTGAGACATCAGATGAGGATGCGAAACGCGATGATTTTTTTGCACATTTAgatctgaaaaataaaaacattcatttgaataatagTTTAGTTGATTCACTACATTCAACTGGGTGTGATTCAGATGTTGAGAGGTCATCAATGATTGATAATATAAAGCAAGAACGTTGCTCACCACAGATGCAACACAATGATTCTAAAGATTTGGCTGATATCCAATCTATTATTAACGTTACATCTTCAGGTGGTGGATTCTTAAGACAACTCGACAAATCGATTCCAAATATTCCAACGCCAGCAAGAGAACTACCGTTCTCAAGGGAAGAAGAGGAAGCACAAGATGCTTTTACAGcagaatttagaaaaatgaaattacgcGGAGAATTTCCATGTAAGCTTTGCACAGCAGTGTTTCCCAATTTGCGTGCTCTAAAAGGTCATAATCGTATTCATTTAAGTGCAGCTGGACCTGGACCATACCGTTGTAACATGTGCCCTTATTCCATTCATGATAAAGCTGCTTTGATTCGACACATGAGAACCCATAATGGCGATCGTCCGTATGAATGTAGCATTTGTAATTATGCATTTACAACAAAAGCCAATTGTGAACGACACTTACGTAACCGTCACGGTAAAACAACACGAGAAGAAGTTAAACGGTCTATTATTTATCACCCATCGGAAGATTCTAGTTGTGATGATCCAATCaagaaaatgcaaatatataattcatcgTATGACGATGAAGATCAATACCCAAAAGATCGTAGTACTCCAGTTTCTCATTTTAAAGATATAGTGACTCCCGAAAAGCCAGCTAAAATTCAAGTTAAGAGCATAGATCAATTGATTCAACATCAAAAACTACAACAGCACCATACTTACGATAATTTAGATAAAGATATTGAATCTAACATTTCGGTACCGATCGAAAATAAACCCATGGACTTGAGTATGGATGCATTAGATTTGagcaagaaaaatattattgcgattgatgatgaaaaagaagaaattaacgCATTACCAAAGAttgatttatcaatatttgagaaaaatcaGCAAATGCTATTGGCTCAACAACAACTTCTTAGTGAAGCATTTCCTAAAATTGATCCAGCTCACTACTTTCAACTTACACAATTGTATCGAAACTTTGTATTTCCAACCACCGGGTTTCCACTTCACCCATTCTTTTTGCAAAATTCTATACTTGCGCAACTACCTCCTCCAAATCTAAATGATATGAAAGACATGCATCAAAATGAAGTACTATCAACACCGCCCCATCCATCAATGTTTTCTGGAGGCATGCTAATTAATCCTATATTTCCAACGCCACCGAATATGGCACAGCAAAATCTTCCGTTAAGAAATATGATGCAAGAACCGCTTAAACGAGAGTCCTCACCACAAAGAATCGCCTCACCACCATTAAAGCAAATGCCACTTACGCCACAGACACCTCGCTCATCTCATACAccgcagcagcagcagcagtcGACCCCACCACATCATCATCAGTCGAATCCACCATTAAGTCCAGGACCTGTTAAAATGGTTATTAAAAATGGTGTGCTGATGCCAAAGCAAAAGCAACGGCGTTATCGTACTGAACGCCCATTTGCTTGTGAACATTGTTCGGCAAGGTTTACACTCAGATCGAACATGGAACGGCATATTAAACAACAGCATCCACAATATTGGGCACAAAGACAACGAAGTGGTCATAACATTATTCGACGAAGCAGCGCTGGTAATATTTCATCTTCCCCACAACCAGGTCCGCAAGCACCATCATCTGCAAATTCTGCGCAAGCGTCGAGTCCACTACCACTGATTgccaataataatacatttagcGCAATTTCGGATCAAGTTAAATATGCTATTCTTGCTCAACAATTAAAATGCCGCAGTGACAAGACATTgagcaacaatttttttgattcaattgCTCAAAATCGTAACCATCAACAGGCACACTACAGCAAACCTCCAACTCCACATGAAGATGATGATGTCGATAATGATTCAAATTTGGTAATTGATGAAGATACATCAGAACCAGAGGACTTATCTCGCAAGTCTACACCAGAATTAAAATCTCCAACACCAAGCGAAATTAATATGGCAGCAAAAAAAGTGGCAGAAAATATTCTTGAACAAGCCATGAAGACAACATCATCAACTAATCTTGGAAATACTACTATATCGCCAGTAACAGCAGCTACTGCTCAATCCACACCAATATCATTGAAAACGAAAGATTTCGACTTGAAAATTTCTCCAACATTAATTGCACGCTCCGATGGAAAATACTTTAAGGATATTGCTGACTCAGGCTTTGGAGCATCGCCATCGTCCATGCTTCTAAAAGAAGAAGGAGATTTGGTGTCTGTGTCAAAGTTAGTTGATAACGCTACAAATGCTATGAGTTTTGGAAGTTATTTTCGCCCTGAAACTGCTCCAGTTGAGCATAGTGACGAAGAAGGTTTAGTAGCATCAGGAAGTGCATCAGAAAGTAATAATTCTGGTACAGAAGATCCACATCCACTCGGtattcaaaataagaaaaagtcgGCCTATAGCTTAGCGCCAAATCGTGTGTCATGCCCATATTGTCAACGAATGTTTCCATGGTCGAGTTCACTACGTCGTCATATCCTTACACACACTGGCCAAAAACCATTCAAATGTTCGCATTGTCCGTTGTTGTTTACAACAAAGAGTAATTGCGATCGACATCTTTTAAGAAAACATGGAAATGTAGAGTCAGCCGTTTCTCTCTATGTTCCAATTGAGGACCTACCTGAGCCAGTGAAAGAGCCAACGCCAGAGCCAacaacaatttcattaatgCCACCGGTACCACAAATACAACTTAATATTCCTCAGTTAAAATGTGATCCACCTACTAACGTAGCCAGTTCTGATTTGCCGTTCAAATGTCACTTATGTGATGGATCATTTTCTGAACGTATTTCGTGTTTGGAGCACATTAAAAACTGCCATCCTCAAGAATTCGCTTTACTATTGTCAAAGGGGGCTATCGAACCGGACGCCGAACATCAAACAATTTCAGCTGAAGATGAAGACAAACACACAGATAATGGTGGACGTGGTAAATATCCAGATTACGCAAATCGTAAAGTAATTTGTGCTTTTTGCATGCGTAGATTTTGGTCGACAGAAGATCTACGACGTCACATGCGAACGCATTCTGGCGAACGCCCATTTCAATGCGACATCTGTATGcgcaaatttacattaaaacataGCATGCTTCGCCATCAAAAGAAACATGCACACAACGCCAATCCAAATCAAAGTAATAGCGCAAATAGTGCATCTGATATATCAGATGATGAACAACCATTACCATCAGCTACATCGTCAAATAATATGTTGTTGGGCAATTCAGCAATAACAGCAGCTGCAGCAATGAGATTACTTAAAATACCTGATCTTATACCAAAAGATTTAACCGCGTGGAAAGCACAAATTGaacacaaagaaaatattgccaCTGCATTGATgcgaaacaataataaatctattgcTGACAGTGGACGCAGTGATCACCGAGATAATGAAGAAACTTCAGAACTTATTGGTAATTTATTAGGCATTAGTGAttcagttattttaaataaagtattactTTCATCAGCTGATGAAGCTGCTAAGTTGCTTGgtgtagaaaaataa
Protein Sequence: MDRRLSTNSESSVEPMDISGKTTSSTDVTNSSIAPKKNNMMVMRKKFRFANNERMPNNKNNNNNSQYIYDKVEATTTTGSRLQHRNDNSEIADANINTTAQYSCPICGVSSPTQHEFTEHIRGHNNSDGSQNYTCQICFKVVSSASSLDRHVLVHTGERPFTCKYCHVTFTTNGNMHRHMRTHKHRDGVSSGGNEQYESDGSTDSSASSSNNNYHSVDGKRKIIDDDYSTTSLKRRLKTINNNNNIINNNSLNNSSAPTQRFCCPVCVRNDFPNMISLENHVDKEHPSIQAKCRYCEVVFKSYKALNAHKCGAGHKAPHITQGFKDITFVDFSSEKFPLIAKSMCEQSIRTPITNQKFECSKCYRAFPCASAVEIHIKSCGVVMTETPQDYSVRKRLSSETSDEDAKRDDFFAHLDLKNKNIHLNNSLVDSLHSTGCDSDVERSSMIDNIKQERCSPQMQHNDSKDLADIQSIINVTSSGGGFLRQLDKSIPNIPTPARELPFSREEEEAQDAFTAEFRKMKLRGEFPCKLCTAVFPNLRALKGHNRIHLSAAGPGPYRCNMCPYSIHDKAALIRHMRTHNGDRPYECSICNYAFTTKANCERHLRNRHGKTTREEVKRSIIYHPSEDSSCDDPIKKMQIYNSSYDDEDQYPKDRSTPVSHFKDIVTPEKPAKIQVKSIDQLIQHQKLQQHHTYDNLDKDIESNISVPIENKPMDLSMDALDLSKKNIIAIDDEKEEINALPKIDLSIFEKNQQMLLAQQQLLSEAFPKIDPAHYFQLTQLYRNFVFPTTGFPLHPFFLQNSILAQLPPPNLNDMKDMHQNEVLSTPPHPSMFSGGMLINPIFPTPPNMAQQNLPLRNMMQEPLKRESSPQRIASPPLKQMPLTPQTPRSSHTPQQQQQSTPPHHHQSNPPLSPGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQYWAQRQRSGHNIIRRSSAGNISSSPQPGPQAPSSANSAQASSPLPLIANNNTFSAISDQVKYAILAQQLKCRSDKTLSNNFFDSIAQNRNHQQAHYSKPPTPHEDDDVDNDSNLVIDEDTSEPEDLSRKSTPELKSPTPSEINMAAKKVAENILEQAMKTTSSTNLGNTTISPVTAATAQSTPISLKTKDFDLKISPTLIARSDGKYFKDIADSGFGASPSSMLLKEEGDLVSVSKLVDNATNAMSFGSYFRPETAPVEHSDEEGLVASGSASESNNSGTEDPHPLGIQNKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSLYVPIEDLPEPVKEPTPEPTTISLMPPVPQIQLNIPQLKCDPPTNVASSDLPFKCHLCDGSFSERISCLEHIKNCHPQEFALLLSKGAIEPDAEHQTISAEDEDKHTDNGGRGKYPDYANRKVICAFCMRRFWSTEDLRRHMRTHSGERPFQCDICMRKFTLKHSMLRHQKKHAHNANPNQSNSANSASDISDDEQPLPSATSSNNMLLGNSAITAAAAMRLLKIPDLIPKDLTAWKAQIEHKENIATALMRNNNKSIADSGRSDHRDNEETSELIGNLLGISDSVILNKVLLSSADEAAKLLGVEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -