Csub020653.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- L_1
- Assembly
- GCA_011634745.1
- Location
- JAABKK010000767.1:41777447-41791791[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 9.4e-05 0.0078 17.2 3.5 1 23 147 169 147 169 0.97 2 18 0.62 52 5.2 5.8 1 23 175 197 175 197 0.98 3 18 3.2e-07 2.7e-05 25.0 3.1 1 23 203 225 203 225 0.99 4 18 2.7e-05 0.0022 18.9 0.2 1 23 231 253 231 253 0.98 5 18 0.022 1.9 9.8 1.1 2 23 360 382 359 382 0.97 6 18 0.14 11 7.3 0.3 1 23 535 557 535 557 0.95 7 18 0.26 22 6.4 1.7 1 23 566 588 566 588 0.96 8 18 0.00065 0.054 14.6 1.7 1 23 596 620 596 620 0.91 9 18 1.4 1.2e+02 4.1 0.0 2 23 626 648 625 648 0.90 10 18 1.4 1.2e+02 4.1 3.2 1 23 655 678 655 678 0.92 11 18 0.004 0.33 12.1 1.3 1 23 712 734 712 735 0.96 12 18 7.9 6.6e+02 1.7 0.3 1 23 904 928 904 928 0.84 13 18 0.00045 0.037 15.1 0.6 2 23 937 959 936 959 0.96 14 18 0.017 1.4 10.1 0.1 1 23 965 987 965 987 0.96 15 18 0.14 11 7.3 0.7 2 23 995 1016 994 1016 0.97 16 18 0.00074 0.062 14.4 0.1 1 23 1115 1137 1115 1137 0.96 17 18 0.0023 0.19 12.8 0.6 1 20 1147 1166 1147 1169 0.96 18 18 0.024 2 9.7 0.3 1 23 1176 1198 1176 1198 0.96
Sequence Information
- Coding Sequence
- atggcactgaaaatgttttatcgaGGACCAAGTTCCAGATTGGaaacattaattgaaaaaattcaacaaaataaagacAACAATTCAGaTATATATTCGTCGCACACATCACTAAGTTTTTCACCATCGCTGTCAGAAGGGGCGGCAACACCAAATTCCTTAACACATCATGACGCCGTCGTTGAAAATAATCGCCTTAATGATAATAGTAATGCGATGGtggaaaattcaaattttcataaaaaccatcaaaataatgtacgattagaaaataatggtGTTGATGATGATAAGCAGACAACTGGTACCGGAACATCACCATCACCAACAACAAAAGCAACAACAAACGCATTAACGACAactaccaaaataaataataatgctaaAACGAAATTGGTTACGGGAACCgctaatcataataataatggtgaaGGATCATATCATTGTCAATTCTGTGATAAATCATTTCCGCGATTGGGTTATTTAAAGAAACACGAACAGaGTCATGCAGAGCACATGCcatttaaatgtgattattGTGCACGtttgtttaaacataaaaGGTCAAGAGATAGACATACCAAATTACATACAGGAGATCGTCGGTATCGTTGTCCACATTGTGAGGCCGCATTTTCAAGAAGtgatcatttaaaaattcacatgAAAACTCATGACAATCAAAAGCCTTTTCAATGCACTGTTTGCAATCGTGGCTATAATACAGCCGCTGCTTTAACATCCCACAtgcaaaatcataaaaaacaGGCAGCCTTACTTGGTGCACCCACCTTAAACTACAGCCCAAGATCAACTGGATCTGGATCAAGTGGAAGCAGTTTACATAAACGTAAATATTCACCGATTATTGAgcaacaaaattcaaatcattctGATTATCTGGTGAATGCTAAGCGAGTGGCTAGTGGTAGCGCCAATTCtgttttgtattgtatttattgcACTAAATCAGATTTTGATACATTGGATCAATTGCATACTCATATTCAACACATGCATGCAGCAGTTTTACGAgaaGCAACATCAACAGCATTTACACAATCAAATTTACAACTTACATGTGAATTTTGTACAATGAAATTTCCATCAATTACAACAATGTTTCAACACATTCGTACGACGCACATCGATCGAATTAATAGCCCAAACTcatatattgaacattttaatcGCATTACTaccaattataattcaatgaattcaaattttagaGGTGAAGATCTATTTAAGCGAAAACTAGAGGAGAATTCACATAATCAACATCCTACAATTACTGTAAAATCTGAACAAAATAGCCCTAAAATAGAACCACAGCGAATTGATCATGAGATCTTACGTGAGCGTAAAACACCTATAAATATGCATcgcattattataaatgaccATGACATTAAACAAGAGGAACAAGATAGTCCAACcgatttaagtaataaaaaaacaccaaTTAATGATTGTCAAGAAAATGGTAGTAAAAGTCCAGTAGAagcgaataataataataatatttgtattgatgCTTCTCCGATTCCGACGCAGCAACAGCATTTACATCATGGACACCAGCAACAAACTGCTGGAACATTCTTATGCAATCAGTGCAATGCTGCATTACCTAATTTTGAAGCATTCCGTAGCCATTTGAAGAGTCATCTAACTCACGGTGAAATGGGAAATTACATTTGTCAACATTGTGGCCTTTCATCACCCAATCAAACTGAACATGATCGTcatattttatcacattttctaATAACGAACACAGAATATAGCTGTACATTCAATTGCAATAAGACATTTGGAAAATCGGATGATCTTCAGAAGCATCTGTTCGATTTACACGCACAAAATCTATGGAAATGTGGCATTTGTTCAGAGTTGTTTGATTCAAAAGTGGCGATTCAAGTTCACTTTGCGGTTGCACATtcaaatgaagtaaaagtgtTTCGTTGTTCAGCATGCATGGATGTATTCAAATctgaaaaagaatttaaacatCATGTGAGAACAAGACACGCTCCTGTTACAAGTGGAAGTGTACAATGTCTATTTTGTCGTACAGTTTGTGCTTCAGAGCTTGAAATGCATTTTCATCTTGCCGCACATGCTCGCCAATTTCGTTGTCCAGCTTGTCCGGAAGCATTTCACGTTGAATTTCTGTTGGATCGGCATATGCAAACACATCATTGTGGAGTACAGAAAGACCATACTGGCCTACAATACAAAgcgacaaataataataataatataatagattatCATTATGCGGTTGCCGGTGGtggaaaaaatttatatacctttAATAGTGGTACAGGAAGCAAAATTTACAATCCATTGCAAATTGATACAACAGTATCGGCGCTAAAAAATCCAAATCCATTGTATGGATTTTACGATTCTATTGGTAAATCAAGGTACGGAGAAGTAGCTAATAAGCATCTAATGGGTATTTATAATACAGAAGTTGCgtccaaattttatttatcatctgATCAATTATCACTTCCACCTCCACCACCACCTCTTCCTGCATCACAAACAGAACGTGAAATTTATCCCCCTGAGCCTTTAAAACCCGATTATTACGGATCTAGAAATATACTGCAAAAACCGTATGTTTCTGTAGCCGCAGTTGGATCTACTCAGAATTCATCGGATATTCACAAATCGGCTGGGCGAAAAGACAGTGGATATGTTTGCGGTATTTGCGAACGTAATGATTTTAGTACCGAAGTTGAGGTACATACACATCGTAAAGTGGCTCATAACGTTAAGACTGGCGTTAGTTTGAGATGTGCTTATTGTAATGGCAATTTTCGATCaagAAACGAGCttgaaaatcatatgaaaataacTCACAATACAAATGGCAAGCACAAATGTTTAATATGTGATGAGATTTTTCCATCACCGGCTGTTCTCGCAGAGCACAAGTTAAATCACTCAAAAATAGGACCATCAGGGAAATGTTCACATTGTTCGACGATACTAAATGATGTCACAGCATTTAAGGCTCATATGTCAGAGCATGGTAATGTTGATGTACCGGTACAGTGTATTTGCTGTCGACAAACATTAAATTCAGAATATGAAATTGGACTCCATGCTaaatttcatacaaaatccACAGATAATAATGAACATACATGCGCCTTATGTTTAGTGAATTTACCACCAAATTCAGATGCCAAAGTATGTGAAAAGTGTTATAAAAAGCATAATTTCACACATAAATATTCTTCTTATGCTGCTGCTGCCGCTGCAGCGGCCGCTGCTGCGGTACATGAACAAAGTTCTCAATCAAAACTGGATGCGATCATCGattataattgcaatatttgtaaaaaatcacTTCCGACACCAACGAAATTGGAAGAACATTTGATCGAACATTCATTTCAAGGATGTGATGAACGTGGTTACACATGCTATATATGTTCGTCTGTTTTTACTTCACCTTCCGGTTTACATCAACATATGCCTGATCATGGTCTAAATTCACGTCCGTACGACTGTAATTTGTGTTCTGCTAAATTTTTCTTTCGCGCTGAAttagaaaatcatttaattgagCATGAAAGCGGACGAATTGTAATGGGAATACCATTGTCAATACAACCACCACAACAACCGCCACTATCATTAATGCATTCCCAAACTCATCATAAATCcgataaaatgaataatttaacaaaaccaACCGTTAAAAGAGAAGACGAGAAAGATGATGACAAGAATTCCATTAAATTAGAATCACAACAGCaacatgatgatgatgatgaatacattgaaattgaaaaattagctGAACATCCATCATCCGGATACAGTAGCAGTAACAATATCGATTCACAAGAGCAAGTAAATGATGAACGAATTAGATGTAGTGATGCTGGTGACGCTGGAGTTGTTAGTAATGATAATACAACATCCCACAATACATTCACACAATCTAATACAccatag
- Protein Sequence
- MALKMFYRGPSSRLETLIEKIQQNKDNNSDIYSSHTSLSFSPSLSEGAATPNSLTHHDAVVENNRLNDNSNAMVENSNFHKNHQNNVRLENNGVDDDKQTTGTGTSPSPTTKATTNALTTTTKINNNAKTKLVTGTANHNNNGEGSYHCQFCDKSFPRLGYLKKHEQSHAEHMPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKQAALLGAPTLNYSPRSTGSGSSGSSLHKRKYSPIIEQQNSNHSDYLVNAKRVASGSANSVLYCIYCTKSDFDTLDQLHTHIQHMHAAVLREATSTAFTQSNLQLTCEFCTMKFPSITTMFQHIRTTHIDRINSPNSYIEHFNRITTNYNSMNSNFRGEDLFKRKLEENSHNQHPTITVKSEQNSPKIEPQRIDHEILRERKTPINMHRIIINDHDIKQEEQDSPTDLSNKKTPINDCQENGSKSPVEANNNNNICIDASPIPTQQQHLHHGHQQQTAGTFLCNQCNAALPNFEAFRSHLKSHLTHGEMGNYICQHCGLSSPNQTEHDRHILSHFLITNTEYSCTFNCNKTFGKSDDLQKHLFDLHAQNLWKCGICSELFDSKVAIQVHFAVAHSNEVKVFRCSACMDVFKSEKEFKHHVRTRHAPVTSGSVQCLFCRTVCASELEMHFHLAAHARQFRCPACPEAFHVEFLLDRHMQTHHCGVQKDHTGLQYKATNNNNNIIDYHYAVAGGGKNLYTFNSGTGSKIYNPLQIDTTVSALKNPNPLYGFYDSIGKSRYGEVANKHLMGIYNTEVASKFYLSSDQLSLPPPPPPLPASQTEREIYPPEPLKPDYYGSRNILQKPYVSVAAVGSTQNSSDIHKSAGRKDSGYVCGICERNDFSTEVEVHTHRKVAHNVKTGVSLRCAYCNGNFRSRNELENHMKITHNTNGKHKCLICDEIFPSPAVLAEHKLNHSKIGPSGKCSHCSTILNDVTAFKAHMSEHGNVDVPVQCICCRQTLNSEYEIGLHAKFHTKSTDNNEHTCALCLVNLPPNSDAKVCEKCYKKHNFTHKYSSYAAAAAAAAAAAVHEQSSQSKLDAIIDYNCNICKKSLPTPTKLEEHLIEHSFQGCDERGYTCYICSSVFTSPSGLHQHMPDHGLNSRPYDCNLCSAKFFFRAELENHLIEHESGRIVMGIPLSIQPPQQPPLSLMHSQTHHKSDKMNNLTKPTVKREDEKDDDKNSIKLESQQQHDDDDEYIEIEKLAEHPSSGYSSSNNIDSQEQVNDERIRCSDAGDAGVVSNDNTTSHNTFTQSNTP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -