Csub004047.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- hang_1
- Assembly
- GCA_011634745.1
- Location
- JAABKK010001323.1:1-14837[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0067 0.56 11.4 2.5 3 23 262 283 261 283 0.95 2 24 0.34 28 6.0 3.1 2 22 356 376 355 376 0.93 3 24 0.46 38 5.6 0.8 3 21 386 404 385 405 0.95 4 24 1.3 1.1e+02 4.2 0.4 3 21 449 467 447 470 0.88 5 24 1.2 96 4.4 0.2 2 21 483 502 482 503 0.91 6 24 0.29 24 6.3 0.1 2 23 511 533 510 533 0.87 7 24 0.00058 0.049 14.7 0.7 3 23 571 592 569 592 0.95 8 24 9.7e-05 0.0081 17.2 0.4 1 23 600 623 600 623 0.97 9 24 0.13 11 7.3 0.1 1 23 635 658 635 658 0.95 10 24 0.16 13 7.1 0.3 1 23 661 683 661 683 0.97 11 24 0.0021 0.17 13.0 3.3 1 23 689 712 689 712 0.96 12 24 0.01 0.83 10.9 0.3 2 23 799 821 798 821 0.96 13 24 0.013 1.1 10.5 2.3 2 23 849 871 848 871 0.96 14 24 0.0048 0.4 11.9 0.5 2 23 880 902 879 902 0.95 15 24 0.00015 0.013 16.6 1.2 1 23 941 964 941 964 0.96 16 24 0.00014 0.012 16.7 0.7 2 23 1000 1021 999 1021 0.97 17 24 0.039 3.2 9.0 2.2 2 23 1030 1052 1029 1052 0.95 18 24 5.2e-05 0.0043 18.0 2.5 2 23 1060 1081 1059 1081 0.97 19 24 0.049 4.1 8.7 7.2 2 23 1125 1146 1124 1146 0.96 20 24 0.017 1.4 10.1 0.0 1 23 1194 1216 1194 1216 0.93 21 24 0.0025 0.21 12.7 0.1 3 23 1253 1274 1252 1274 0.91 22 24 0.063 5.3 8.3 0.3 2 23 1299 1320 1298 1320 0.94 23 24 2.6e-05 0.0022 19.0 0.2 3 23 1334 1354 1334 1354 0.99 24 24 0.0003 0.025 15.6 1.0 1 23 1472 1494 1472 1494 0.97
Sequence Information
- Coding Sequence
- ATGTCGGAAGATGTGCTTAGAAGAACAATTCAACGTGGTGGCTGTCGATTATGCTTGGCACCAGACACAGAATGTGTTCCCATTTTTGCGACTGCAGCTGCAGATAAAGAGCCActatcatcaaaaatattgtcttGTGTGAATATTAAGgTACATCAAGCAGATCGTATGTCATCGCGTATATGTCATGCTTGCATAAGCTATTTGAATTCATggcaaagttttaaaaatcgttGCTATGCGGCtcaaaagaaacagaaaaatttCTTGGATTTATGGATGGCAAAAGAACGTGCCAAACAAAAAGTTAATCAACAACAAGCTGCTGCAGCTGCTGCTGCTCAGCGACAACGTCAAATTCAACATCAAAGAGCACTGATGGAGGCTCAACAACAGAGAATTCTTAAAAATGCTTTAACACAATCGTTGTCACATAATTCATCACCATACAATAATTCTAACAATAATAGTTCCATGGATGTGagcTTTATAAAAGAAGAACCAGAAGAAGTAACGAGTGACCTGGAAACTGACGGAGTAGATCCGACACAATTTTTGGCTCAAAATGACGACTCAGTAACAAATTTAGAAGATGGACCACAGATTCTAACGTCACTTGGACTAACACATATAAATCACGTAAATCCCTTCAGCTTTTTGaGTACTGAACTGGGACATGAAACATCACAAATTGAAGGTGAAGATtcactattatatatatcaccACAGCAAACAGCTCAACATCAATTAAATCGAACCAGTTCTGGAAAATCCCAAGCATGCTGTacaatatgcaatatgcaatTTTCAAATCGAGCCAATGCCCGACGTCATGAACGTAATATTCATGgcataaaaattgatttactcCACGGTAGTGCTGTCGCTCATTCAAGAGAACGTCCCCAAGTTTCTATAACAGCTCCTATGCGGGTAGCACGTGTACGAGAATTACCAATTGTGTACAATTACGACAAACCAGaattatatcgaaatttaataactgaaccaaaattaaatttcattaaacgACATATTGATTTCTTGGAACAATACCAAAATATGACGTGCAAATGTTGCGATAAACAATTTCCAACATACAAATTCTTTATGGCGCATATGCGTAAACGATATGACACTTTATCACGAAATctatgttttaaatgtttaaaacaattcCAAACTAAGCCACAATTTATTgcacatttaaagaaaaagaattgcTTAAATTTGTACAAGGTGTATTGCGCTGATGACACTATTTCAAAAGATCCATTGCCATTGCTACCGCCACGTGGTACGCGTATTGGTTCCAAAgaaattattgcaaataaatcatATGGTTGCAGATTATGTACCGAAACGTTTcgattaaaattagatttccGTGCACATGTATTTGATGCCCATGGTGATGCTCAGAAGAGAGATATTCAAGGTTCAACTTCTTGTGGATATTGTAATATGGAATTTGAAGATTCTGGTGTACGACGAAGACATTACAATAACGTCGAATGTATGGTATTTCTCATTTGTGGGACGTGTGACGAACGTTTTGATAATCATGCTGCATACATTGAACATGTTTATGCGACCCATATACAGCCAACACCAAttaaaagtgaatttttaGATGGCGAGGATGACAATGGATTAATGAATGATGATGGCTTATCACCATCACAAAGCAGTTTACGAAATCCACAAAACTGTTCAGTGTGTGgaaaacaatacaataattactACAATGTTTTGAGGCACATGGAATCGAAACATCCCGATCAATTGCCTGGTACTTATAGATGTGAAACATGCAATATTGGTTATCCTCGTCAATCGGAATTACGTGATCACATGTTCAAAATACATGGTGAAACTATGCCAAAAGTAAAACGGGAACTATTTAGCTGTCGCATTTGTGGTGGCATGTTTGATAACAAGGAGGTCTGGTTAGATCATCAGTTTACTGTTCATTCGAAGTTTTATTGCAATCAATGTGAAGCTGAAacagaaaatagaaatgaatttgAGGCACATTTAAGTaatcatttgaaattgaaagtaTTTAAGTGTACCGTTTGTCATCATTCGTTCAATTCTGAACGGGGATTAGAAACACATTTAACTGTTATGCATGacataaaaaaagatgaaatgcCCGAAATCGAGGGTGACTATGAAATGAGAGATGGCGTAGCCGTTGAATGTGCCGTCGATATAAAGGTAAATGGGgaggatgatgatgatgaaatcAAGGGTGAAGGTGCTGATAATAATGATGGCAATGAGGCTGACAATGATGAAACATTAGTGCATGctaacaaaagaataaaattggaTGATTCGGTTAAAGAGGCTAATACCATTGGTATTAATCCACTACAAATAAGTACAACGTGCAGAATTTGCAAAGACTCATTCCCGACTAgagcattatttataattcatatgcGTAATGCTCACAGTGCACCGCGTGCATTTCCACCATTAAGTACTGGCACGCTTCAAGCACCTTCACAACATCATAATGTTAACAATCGTCTAAGATGTCGTATTTGTCAAAAGCGAATTCATACGAAAGCTGGTTATAAACGTCATATGTTAACAGTACATCAAGTGCGCGATtgtgttttcataaaatgtaaaatatgtcCATCTGAGTTCAGTAACGACAAAGGTCTTAAAGTTCACATGTTTAGAACACATAACATTACCGTACAACAAATGCAACAAGATGAACGCTTGTGTCCGATTCCAAAACAAGAATCTACATCGACAACACATCAACAATTGCCAATTAAAATAGCACCTAAGGTTATGTTTGAATGTGATATTTGTCACACCGTTTATAGAAGCAAAGATCAAATGAAAGCACATAAAAACATAGTTCATGGTATTGCCGACGGTACATCTGCAAATACATCGGATCCAATTGATGCATCTACGGATTTAGATGACGTACCAGAGCCAGTATTTCCCACTGGTGAAGCATGGTGGCAATGTCGTTACTGCGATGAATCATTTAATGCAAGTAAGAAGCTTACAATTCACATGAACAGTCATGGTGAATACGATAATACTGAGACCACTTGTAAGGATTGTGGTAATATATATGGTACAAGAAAATCTTTATGGGTTCATCGTCATAAGAAACATCCACGCATACCGAATCCATCACCCTGTGAACTATGCGATAAAACTTTCTTTGATAAAACAGAACTATTTCATCATTTAAAGACACATTCAAACGATGATGTATTCTCGCATTTGCAAGAGATGCAAGAACAATTACAAGCAGAACAAGAAACCAGACAAAAGCAACAGATGCAACAAGATGTTACTGAAATGGGTGGTCATGCTGCACAAGAATTATCTTGTCATATTTGTCATCAAAGATTCCATGATAAACGTGTTTTAAGTAAACACTTGCGTTTACAtgagcagcaacaacaaacaGATTCAATATTCACCAATTCACCTTTAGCCGCAATGTTAGCCGACACAAGTATTGGTATGGAGGAAAATGGTGCATCCGATTATAATTTTCCATCATATAAAGGACAAATGGTAGACGGACAATATGCATGTGACATGTGTCCCAAGACATTTCCGCTCATAAATGCATTGAAAGTTCATCGTGGGTGGCATTTTAGAAGTCCTGATGGCCGTCAAGTAACTGATCCAGGAAATATGTGGCACCCTGATTCCGTTCCGCAAAACAAAGTGAAACGAGTCCGATCTTCAAACCCACCAATTTGTCCTTATTGTAATTCCACATTTGCTAGCGGAAATAATTTACGACGACACATTGTCGAAGTGCATAAACGCAATGAAGCAAAAATGATGCGGGAAAATGGTACGGTTAGTGACACtgttttcatagaaaaagaaTGTGAATGTCAAGCGTGTGGCATAACATTCAGTAATCGACCAGAATGGGTAGATCATAAAATATCACATGCACGTACAATGAAACCGTCCACAACATTTGAGTGGGGCTGTGAAATCtgtggaaaaatatttacaagaaaaGAACGTTTACTTGTTCATATGCTTGTTCATTTGAATGGTAAAGATGAGGAGACCAGTCAACATTCTGGTGAACAGCACAGTGAATTAGGCTTTGAGAGCAATTCACAGAGTTCTATGTCATCACAATCCCATTCACAACAATCGCAAGAATCGAATAGTTTACGAcaccaaaaacaaaagcaagCAAACCAAAAACCATCAATATCATTACTGAAGCAACCATCATTACTTTTACAACAACAGCAGCCACAACAACCACAAtcgcagcaacaacaacaacagcaacaacaacaacaacaacaacagcaaaagcaggagcagcagcagcagcaagcAGATGACACAGATCCAGAAGAATCTTCAGATCAGCCAGACGCTGCATATTCATGTGACTTGTGTCAAGTATTTTTCCGTACAGCTAAAGAGCTCCGACGTCATGTTACCAGTCATATAATAAACGGACCAGAAGCAAATAGTTCTGATTCACATGAACAAAAATCACAACAGCAACATAAAGGAGAAGAAGAGgaagatgaagatgatgaaAGCGATGACGAACAAATAATACCCGACCAAATGCATCCACAAAATATTGATGTAGATGATCTAATTGATGAAGACATTCAGGACGGTGAAGAACAATATGAACAAGATGAAGATGAAGACATTGAAGACGAAGGTGGTGAATTAGAAGATAacgatattgaaaatgataatgaaattgaaaatgataatgataatgaaattgaaaacgataatgataatgaaattgaaaatgataacgaaactgaaaataataatgaatcaGATAATTCAGATAATTCAGATAATGATGAAGATTTAGATGAAGAAAGCCGTGATGGAGATGATCAGATTTCAAGTACCAAAAATGAATCCCATTTGACTGGATTCAATTGTCGTGTATGTGGTTCAAGTAGTGAATCTCATATGGATATGATTCAGTGCATGGAAG
- Protein Sequence
- MSEDVLRRTIQRGGCRLCLAPDTECVPIFATAAADKEPLSSKILSCVNIKVHQADRMSSRICHACISYLNSWQSFKNRCYAAQKKQKNFLDLWMAKERAKQKVNQQQAAAAAAAQRQRQIQHQRALMEAQQQRILKNALTQSLSHNSSPYNNSNNNSSMDVSFIKEEPEEVTSDLETDGVDPTQFLAQNDDSVTNLEDGPQILTSLGLTHINHVNPFSFLSTELGHETSQIEGEDSLLYISPQQTAQHQLNRTSSGKSQACCTICNMQFSNRANARRHERNIHGIKIDLLHGSAVAHSRERPQVSITAPMRVARVRELPIVYNYDKPELYRNLITEPKLNFIKRHIDFLEQYQNMTCKCCDKQFPTYKFFMAHMRKRYDTLSRNLCFKCLKQFQTKPQFIAHLKKKNCLNLYKVYCADDTISKDPLPLLPPRGTRIGSKEIIANKSYGCRLCTETFRLKLDFRAHVFDAHGDAQKRDIQGSTSCGYCNMEFEDSGVRRRHYNNVECMVFLICGTCDERFDNHAAYIEHVYATHIQPTPIKSEFLDGEDDNGLMNDDGLSPSQSSLRNPQNCSVCGKQYNNYYNVLRHMESKHPDQLPGTYRCETCNIGYPRQSELRDHMFKIHGETMPKVKRELFSCRICGGMFDNKEVWLDHQFTVHSKFYCNQCEAETENRNEFEAHLSNHLKLKVFKCTVCHHSFNSERGLETHLTVMHDIKKDEMPEIEGDYEMRDGVAVECAVDIKVNGEDDDDEIKGEGADNNDGNEADNDETLVHANKRIKLDDSVKEANTIGINPLQISTTCRICKDSFPTRALFIIHMRNAHSAPRAFPPLSTGTLQAPSQHHNVNNRLRCRICQKRIHTKAGYKRHMLTVHQVRDCVFIKCKICPSEFSNDKGLKVHMFRTHNITVQQMQQDERLCPIPKQESTSTTHQQLPIKIAPKVMFECDICHTVYRSKDQMKAHKNIVHGIADGTSANTSDPIDASTDLDDVPEPVFPTGEAWWQCRYCDESFNASKKLTIHMNSHGEYDNTETTCKDCGNIYGTRKSLWVHRHKKHPRIPNPSPCELCDKTFFDKTELFHHLKTHSNDDVFSHLQEMQEQLQAEQETRQKQQMQQDVTEMGGHAAQELSCHICHQRFHDKRVLSKHLRLHEQQQQTDSIFTNSPLAAMLADTSIGMEENGASDYNFPSYKGQMVDGQYACDMCPKTFPLINALKVHRGWHFRSPDGRQVTDPGNMWHPDSVPQNKVKRVRSSNPPICPYCNSTFASGNNLRRHIVEVHKRNEAKMMRENGTVSDTVFIEKECECQACGITFSNRPEWVDHKISHARTMKPSTTFEWGCEICGKIFTRKERLLVHMLVHLNGKDEETSQHSGEQHSELGFESNSQSSMSSQSHSQQSQESNSLRHQKQKQANQKPSISLLKQPSLLLQQQQPQQPQSQQQQQQQQQQQQQQQKQEQQQQQADDTDPEESSDQPDAAYSCDLCQVFFRTAKELRRHVTSHIINGPEANSSDSHEQKSQQQHKGEEEEDEDDESDDEQIIPDQMHPQNIDVDDLIDEDIQDGEEQYEQDEDEDIEDEGGELEDNDIENDNEIENDNDNEIENDNDNEIENDNETENNNESDNSDNSDNDEDLDEESRDGDDQISSTKNESHLTGFNCRVCGSSSESHMDMIQCME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -