Csub019425.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- -
- Assembly
- GCA_011634745.1
- Location
- JAABKK010000767.1:24624570-24628268[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0084 0.7 11.1 0.2 1 23 181 203 181 203 0.97 2 14 0.00035 0.029 15.4 1.7 2 23 209 231 208 231 0.94 3 14 9.4e-05 0.0079 17.2 4.3 3 23 247 268 245 268 0.93 4 14 0.0078 0.66 11.2 0.1 1 19 294 312 294 314 0.96 5 14 0.00016 0.013 16.5 0.7 3 23 453 473 451 473 0.96 6 14 2.7e-05 0.0023 18.9 6.6 1 23 499 521 499 521 0.98 7 14 0.0026 0.22 12.7 7.6 1 23 527 549 527 549 0.94 8 14 3.4e-05 0.0029 18.6 5.0 1 23 555 578 555 578 0.93 9 14 1.3e-05 0.0011 20.0 0.9 1 23 588 610 588 610 0.97 10 14 0.00051 0.043 14.9 0.4 1 23 615 637 615 637 0.97 11 14 3.9e-06 0.00033 21.6 0.4 1 23 643 665 643 665 0.96 12 14 2.3e-06 0.0002 22.3 1.0 1 23 671 693 671 693 0.98 13 14 1.3e-06 0.00011 23.1 0.7 3 23 701 721 699 721 0.96 14 14 0.0018 0.15 13.2 0.9 1 23 733 756 733 756 0.97
Sequence Information
- Coding Sequence
- ATGGATATGTCCAAATTATGTCGAACGTGTTTGAAGGAAACcgatgaaaatatgaaatcaatatttacGACGGCGACAATTGATGAAGTTGACAGTAAGTTATTAGAACCCACTGATAATTCTGCATTACATGAAGATGCATCAACAGCTATTGAaccaacaataattaatatgattgCCGCTTGCAGTGCAACTACAATGGACATTGCTGGGCTTCCAAATCAAGTGTGTCATCAATGTGCTCGTGACTTACGGGTGgcatatgaatttaaaaagcaatgtgaaaatgcttttaagaaattaaaaatattacttttggGTGATATTGAGGAAGAGGATTCTTCAAATGTGCCAAAAGCAAATAGaacaaatttatcattaaaaccagaaaatgatattaaatcgAACCAAATTTTAGGCAAGAATTATACCGATTTAAATGGGAGCAATAAAAATACGAATACGGAAAATTGCAATGAAATTGTTGTGCAAATTCTTGGtccaaatgaaaaatgtacacAAACTGAATATTCATCAATTTATCCATGCGAAATgtgtgattttaaatttttaaatgaagaagaTTTACGTTCGCATcgaataattcataaaaattcagCTATAAAATGTCGCATATGTTCAAAAGAGTATTCAAGAATAACGCATTTAAGACGTCACATTAGCAACGCACATCCAAGTGATATTCCACCTAATTTACAGCCGCTAAATAATGTATGTTGTGAATTGTGTAATCGAAAGTTCACACGCATCTCGCATTTACGTAGGCACATGGAAAACATCCATCCTCCAAATAACAGTGAACCGACGATAGCTGCTAAGGGTGAATTGAAACATGAAACAGCTGATGATGAAGAATGTTATTCATGCAATATTTGTAACAAGCTATTTGACACTGAAGAAGAATATTTACGCCATGGAGAATGTGATGTTACAGATTCAATTGATCGAAAACCGAAAAATGAAACTATACATGAAgcatttaatacaaataatggcAATGGCATTGATGACCATGATGATGGACTAACAAACGTTGTTGATGTCTTAGAGGTCATCGATGGTTCAGCAACAGTCAAAGCCGAGAAACTATCGGACACTGAGCAATGCATTAATACTGATAAATATGTTGACAATGACGATGAAGATGAATATCAACCAGAAATTGatcaatacaatattaatcTCTCGCACGCAGATAACTCTGAAAGCTCATCGGTGAATTCATCATCCGACTCTGACTACGAAAAAGACAGAAAACGTTCAGCGAAAAAACGTGTTGCAAAACGTACGACTCGCCAATCAGCTACAAAGCGACCTAAAAAAGAATCTATTATATGTGATCATTGCCCAAAACGTTTTGTCGATCAggctaaatatgaaaaacacaaattaattcatttgaatgtTTCATTGGATGGTGCATCAAACACTAGCACGGCTGAAACCCCAACTACATCACCACCAAATCGAACGCATCAATGTTTAGAGTGTAATAAGTTCTTTACGCGTGCAACGCATCTCAAAAGGCATTTGACCACACATTCGGAAGAACGACCATTTAGTTGCCAATTGTGTGACAAGAAATTTCGTAGAGCCGATCACCTGCgTTTGCATAGTCATCATCATTCGGATATTAAACCCCATATTTGTGAGCACTGTCAAAAGGGTTTCACGAGATCAGAACATTTACGGAAACATATATTGGCACGCCACAGTGGACGTCCACCAGCCACAAAAGACTTTATATGTGAGATATGTAAGCGTGGTTTcacaacatcaaaatatttgcagGTTCAtgttaaatcacattttgacCGAACATTTGACTGTAAattttgtgaagaaaaatTCGAAAGAAAGCCTGAGCTGATTGAACATGCAAAAACACATGCAAATGAACGGCCATTTTTATGTTCTGAATGTGGTTTGCGATTTGTACGAAATGATTATCTAGTGATTCACATGAGGAGACATAAAGGAGAAAAGCCATATAAGTGTAAATACTGCAACAAAGGGTTCCCGCGCGCCACCGATTTAACTGTTCATGAACGTTATCACACGGGAGAGAAAACTCATTTGTGCACAATATGTGGAAAAGGATTCCAGAGAGCTTATAATTTGTTAGTTCACATGCGTGTTCACACAGCTCACGTTAGAAGACATACTGGCGAAAGATATAAATGTGATGTTTGTGGAGATGGATTTATCCAGGGTTATCATTTGACACAGCATAAGCGTAACGTTCATGGAATTGATATGAAATCACATATAAGACGGGTAGCCAAATTTCTACCAACTAATCCAGATACGCCGATTCCAATAAATGCAACTGATACTGTACCAGATGTTCCGAAACATAaactatttaacattttaacaaatgATGATCAATTACTTAATGAACATAACATACAGCAATCACATCAACAGCATCACCAAAACACTATGCATGATGATAGTTCACATCAATCCCATGCATCGCTTCCACCGCATCAAACTTCGTCTACCACATCATCATTAATGCAACTGACAGAGCACGATATAAAAATCGAACCACAATTATCCCATATCAGCCATGATTCTCAATCATCGGATATCGGAATTTATCAATCAACATCACAAGAACATCACTTCCATCATCTTCAACAGCAATCGCAACACCAGCAACAATTACTACTACATCAACATTTAATGAATGATCAATCAGCTACAGTTGTTGGTCTTAATATACCAATAatgtcaattaatttattatcaacaatgcatcaaaaaataaaaataccagtTGAACAAACAACAATTACTGATCAACATTCTACCACAATAAATTCACCACCTACTTCCTCGCAATCTTTTCAGTAA
- Protein Sequence
- MDMSKLCRTCLKETDENMKSIFTTATIDEVDSKLLEPTDNSALHEDASTAIEPTIINMIAACSATTMDIAGLPNQVCHQCARDLRVAYEFKKQCENAFKKLKILLLGDIEEEDSSNVPKANRTNLSLKPENDIKSNQILGKNYTDLNGSNKNTNTENCNEIVVQILGPNEKCTQTEYSSIYPCEMCDFKFLNEEDLRSHRIIHKNSAIKCRICSKEYSRITHLRRHISNAHPSDIPPNLQPLNNVCCELCNRKFTRISHLRRHMENIHPPNNSEPTIAAKGELKHETADDEECYSCNICNKLFDTEEEYLRHGECDVTDSIDRKPKNETIHEAFNTNNGNGIDDHDDGLTNVVDVLEVIDGSATVKAEKLSDTEQCINTDKYVDNDDEDEYQPEIDQYNINLSHADNSESSSVNSSSDSDYEKDRKRSAKKRVAKRTTRQSATKRPKKESIICDHCPKRFVDQAKYEKHKLIHLNVSLDGASNTSTAETPTTSPPNRTHQCLECNKFFTRATHLKRHLTTHSEERPFSCQLCDKKFRRADHLRLHSHHHSDIKPHICEHCQKGFTRSEHLRKHILARHSGRPPATKDFICEICKRGFTTSKYLQVHVKSHFDRTFDCKFCEEKFERKPELIEHAKTHANERPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKYCNKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHMRVHTAHVRRHTGERYKCDVCGDGFIQGYHLTQHKRNVHGIDMKSHIRRVAKFLPTNPDTPIPINATDTVPDVPKHKLFNILTNDDQLLNEHNIQQSHQQHHQNTMHDDSSHQSHASLPPHQTSSTTSSLMQLTEHDIKIEPQLSHISHDSQSSDIGIYQSTSQEHHFHHLQQQSQHQQQLLLHQHLMNDQSATVVGLNIPIMSINLLSTMHQKIKIPVEQTTITDQHSTTINSPPTSSQSFQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -