Csub007944.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- zfy1_1
- Assembly
- GCA_011634745.1
- Location
- JAABKK010007667.1:13501049-13503696[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 3.2e-06 0.00026 21.9 2.2 2 23 252 273 251 273 0.97 2 16 0.00067 0.056 14.5 0.6 2 20 313 331 312 333 0.93 3 16 0.026 2.2 9.6 0.3 3 23 344 365 343 365 0.94 4 16 0.0046 0.38 11.9 6.0 1 23 371 393 371 393 0.97 5 16 2.8e-06 0.00024 22.0 1.2 1 23 399 422 399 422 0.98 6 16 0.56 47 5.3 4.6 1 23 427 449 427 449 0.97 7 16 0.0051 0.42 11.8 7.9 1 23 455 477 455 477 0.99 8 16 5e-05 0.0042 18.1 2.9 1 23 483 505 483 505 0.95 9 16 3.1e-06 0.00026 21.9 0.3 1 23 511 533 511 533 0.98 10 16 2.4e-08 2e-06 28.5 2.1 1 23 539 561 539 561 0.99 11 16 5.3e-05 0.0044 18.0 1.1 1 23 567 590 567 590 0.96 12 16 9.5e-06 0.0008 20.4 0.6 1 23 642 664 642 664 0.98 13 16 3.3e-05 0.0027 18.7 1.4 1 23 670 693 670 693 0.94 14 16 8.5e-06 0.00071 20.5 0.7 1 23 699 721 699 721 0.98 15 16 0.00031 0.026 15.6 5.2 1 23 727 749 727 749 0.98 16 16 1 86 4.5 0.1 1 16 755 770 755 772 0.86
Sequence Information
- Coding Sequence
- atgtcaaaaattgaaaatcaatgcAATTTTACTTTGCAACAAACATGTAGAACATGTTTACGAAATGATGGCCAAATAATGTTTCCTGTTTATAGAAAAGATCCTTCAAATGGCAATTTAACGCCAATCCAAATGTTTGACGAATCGATGAAATTTAAAATAACACAAAATGATGGACTTCCACAGCAAATATGTCGAAATTGCATAAGCTGTTTATCTACTGTACgcgaatttcgaaaaaattgtGAGAAATctcgaaatattttagaaaaatattttaattcacttaGTCATATTGCTACTAAACACAATAGtgatagagaaaaaaaatctccgtTCAATTCAGAATTGAATGATTCGGTTAATTCTGATGGAAAACCAACAGCACCATCCGGTTtcgaatttttgaatattgaaattttgGGTGACGTCattaatattagaaatgtGACAGCCACATCACAAAAAGAGTCATCAACACATAATAAGCCAGTcgctgataaaaaaaataattttgatgaagCCCAACAAGAATTTTTGACCGAAGACACTGACgaaaatactgaaaatgaACGTATCGAAGAAGATAATTCTGAGCTGGAAAACAATAATACTGAAAGCAATGATGAATATGTGAATGTAGATGATGAAAATGGTTTCTCAGAGGATGAGCTATCAGATGATTTTGATCATAATATTAGAGAGACAGCCAAATTTGATCATAATAGCGATGGCCAAATGATTGCTGATTTAGAATGTGATATTTGCTCAAAGACATACAAACGACGTGCACATTTGTTACGCCATATTAAATCACATACtacagaaaattcaaaaataaacaatcacAGTTCCGGTATTGCAAAAATGTCTCCATCGAAAGTGAAAAACgtcaatagaaataaaattaaaaatcaacgATTTACATATGTTCTTCAATGTAGAGTTTGTGGAAaacatttcacaaaattaaaagcacTGCAGCAACACGAAAATGAACGGAAATGTAATTCCACAATAAATCCGGCATGTCGATTTTGTAAAGAGACATTTTCAACCGTTATTTTACTTAAAGAACATTTGGAAAATGCTCATCCACGTAATCGACCGCACATGTGTCACATTTGtaagaaaacatttcaaaGTGTCTCGAATCGAAATACACATTTACAATCTCACAATAAAGATGATTCATTCAAATGCGATGTATGCGGCCAAGGTTTTAAAAGTAaagtgtatttaaataaacaccGAAAATCGGTTCATACAATATCACATCATCAATGTCCGCATTGCTTGCAAAACTTCGACAATACTGTTAAGTatgattatcatttaaaaagtcACGAtccgaataaaaaatataaatgtaaattttgtgataaatcatttttacaacATCATCATTTGGCTAATCATGAACGAATCCATTCAGGCATTCGGCCATTTTTGTGTAATGTCTGCGGGAAGGATTTTAAGCAAGAATGCAATTTTAAACTTCATTTGAGAATTCATGAAAATGTTCGACCATACGTTTGTAGTATATGTGGCAAGGATTTCATACAGCGCGGTTCCTTTGTAATGCATATGCGTCAACATTCGGGAATACGGCCATACCAATGTGAGCACTGTGGAAAagattttgtacaaaaatcatCGTTGACCGTTCATTTAAGAACACACACTGGCGAAAGGCCATACAATTGTGATGTCTGCGATAAAGCATTCGTGCAAGCACAACAACTGAAATATCATCGTCATTCTGCGCATGGTGGTCCTCCGGTGGTTAAGAAAGAATCTAATGCAGGCAATTTTACATACGTCAACAATGAGAATAcagcaaatatttcattaccaATGGCCACCACAACAACTACCACGAATGCATCGAATTCATTATCCACTGATGAACGTGTCTATCCATATGTTTGCTCATTATGCAATCGTGGCTTTAAATTGCCATCATCATTATCGTCACACATGAAAAGTCATAACGAAGAACGTAAACATATTTGTCAACAATGCGGAAACTCATTTAAACGAGCTGAACATTTACGAATTCATATCAATGGGGtccatttaaaacaaaaaccatacGCTTGTCAGATgtgtaataaaacatttgcTCAGTCCGGTGATCGAAATATTCATATGCGGCGTCATACAGGCGAGAAACCCCATCAATGTACATATTGTCAAAAGCATTTCCGTTTATTGAAGGCGATGCGAGCTCACATGCGAATTCATACGGGAGAACGTCCATATAAATGTGAATTGTGCAATATGGATTTCATGACATATACAGCATTGGCAAGTACgtaa
- Protein Sequence
- MSKIENQCNFTLQQTCRTCLRNDGQIMFPVYRKDPSNGNLTPIQMFDESMKFKITQNDGLPQQICRNCISCLSTVREFRKNCEKSRNILEKYFNSLSHIATKHNSDREKKSPFNSELNDSVNSDGKPTAPSGFEFLNIEILGDVINIRNVTATSQKESSTHNKPVADKKNNFDEAQQEFLTEDTDENTENERIEEDNSELENNNTESNDEYVNVDDENGFSEDELSDDFDHNIRETAKFDHNSDGQMIADLECDICSKTYKRRAHLLRHIKSHTTENSKINNHSSGIAKMSPSKVKNVNRNKIKNQRFTYVLQCRVCGKHFTKLKALQQHENERKCNSTINPACRFCKETFSTVILLKEHLENAHPRNRPHMCHICKKTFQSVSNRNTHLQSHNKDDSFKCDVCGQGFKSKVYLNKHRKSVHTISHHQCPHCLQNFDNTVKYDYHLKSHDPNKKYKCKFCDKSFLQHHHLANHERIHSGIRPFLCNVCGKDFKQECNFKLHLRIHENVRPYVCSICGKDFIQRGSFVMHMRQHSGIRPYQCEHCGKDFVQKSSLTVHLRTHTGERPYNCDVCDKAFVQAQQLKYHRHSAHGGPPVVKKESNAGNFTYVNNENTANISLPMATTTTTTNASNSLSTDERVYPYVCSLCNRGFKLPSSLSSHMKSHNEERKHICQQCGNSFKRAEHLRIHINGVHLKQKPYACQMCNKTFAQSGDRNIHMRRHTGEKPHQCTYCQKHFRLLKAMRAHMRIHTGERPYKCELCNMDFMTYTALAST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -