Csub010547.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- -
- Assembly
- GCA_011634745.1
- Location
- JAABKK010007667.1:42197642-42200634[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 8.5 7.1e+02 1.6 0.5 1 12 223 234 223 237 0.82 2 22 0.023 1.9 9.7 7.4 1 23 257 280 257 280 0.94 3 22 0.099 8.3 7.7 0.2 3 23 290 310 289 310 0.95 4 22 0.43 36 5.7 0.2 5 21 320 336 316 337 0.86 5 22 0.85 71 4.8 0.1 3 23 376 397 375 397 0.95 6 22 1.3 1.1e+02 4.2 0.2 5 20 419 434 416 436 0.88 7 22 0.00033 0.028 15.5 0.0 2 23 443 464 442 464 0.96 8 22 0.079 6.6 8.0 0.3 3 23 470 491 469 491 0.95 9 22 0.0037 0.31 12.2 4.3 2 23 496 517 495 517 0.97 10 22 0.18 15 6.9 1.3 1 14 521 534 521 535 0.92 11 22 8.2e-05 0.0069 17.4 2.7 1 23 556 578 556 578 0.96 12 22 0.012 0.97 10.6 0.5 1 21 584 604 584 605 0.92 13 22 2 1.7e+02 3.6 0.2 5 22 615 632 614 632 0.92 14 22 2.4e-05 0.002 19.1 0.9 1 23 651 673 651 673 0.98 15 22 1.2e-06 9.9e-05 23.2 0.2 1 23 679 701 679 701 0.97 16 22 6e-06 0.0005 21.0 0.1 1 23 707 729 707 729 0.97 17 22 2.5e-06 0.00021 22.2 0.1 1 23 735 757 735 757 0.98 18 22 2.5e-06 0.00021 22.2 0.2 2 23 764 785 763 785 0.97 19 22 4.5e-07 3.8e-05 24.5 0.1 1 23 791 813 791 813 0.98 20 22 2.5e-06 0.00021 22.2 0.1 1 23 819 841 819 841 0.98 21 22 1.1e-06 8.9e-05 23.3 0.1 1 23 847 869 847 869 0.97 22 22 1.5e-07 1.3e-05 26.0 0.1 1 23 875 897 875 897 0.98
Sequence Information
- Coding Sequence
- ATGGATGTTCAGCAGAAAAATCGCAATTTTCTGAGTTCGGCTACCTCTAATTCATGCGATCACGATAATGAAGGAAATATTACAGTTATAACTGTTGAAAGAGAATACCAATGCTATGtgttattaaagaaattagtTATGCGAAAAATTAACAAGTATTCTCGAAATTCTgtcagtaaaataaataaaggtgtgcaagaaaatgaaaatcatccTCATACTAACAATACATCGAACAGTCATTGTAGTCCACATACTGCATTAAATACAAGTCCTGACAATATATTTCGCAATCGAAAGACATTCCATTTATCAATCAGAGATGATGAAGAATCGGTTCTTAGATGGCGTGCGCGCATTGAAAGCATAGCACATAAGTGTAATTTTGgaacaaatctaaatttatttttggtggaTAAGTTTATCACTGGCATGAATGAAGATGCATTTTATGAAAGACTGGATACCGTTACCATGAAAACTGAAGACATGCAATTTGAAGAAATCGTAAAGATTGCATTGGATCATGAAATACAGTTATCAGAGAGAAGTAATAGTTCATTGCATCAGATACAGGATTTGATTACACAAGaagatgaattaattattatgaatgccGAAACTAGTCAGAATTGTAttagaataaatgaaaatgtcacGAAAAAATTCGAATGCTACATTTgccatacaaattataatgaaagcGACGAACATAACGTgaatcaaaaatgtttaatcaaacattttcaattggcGCATGTGGAGCCATTCACCTGTCATATTTGTGAAAAGCATTTTACCACTAGTTTCAAATTGCGGTGTCATATAAATGAAGTACATCTGCGGATACTACAAACTACGAACATTTGTGATGTATGCAATGAAAGCTTTCAAACGCCACTTATATTGAGAAGACATAAAATGCTACATAATGATGAAAAACCATTTGAATGCATCGCatgtaaaaaaacatatagacgatttattgcattgaaaattcatttgcaGCAATTGTGCCAGTACAGGTATTCTACACAAGAACCGAGCGCTGAAATGAATCCAAATGAGGTCAAATCAATGGACAcagataaatattctattaccgagaattatgataataaattatgcgaAATATGCGAGGAcacatttctaaatatatacgaTTTAAGACAGCATTTAATGATGGTACATGCAAATGATCCCAACTCATATGTTACGGAAAACTTTCCGTCTGTTGTAGGAAATGAGTGTATTCGTTGTAAAAGGAAATTTGTATCCGTCAGAGACCTAAATGCTCATAAAAGTGTATTATGTTCTAACAATCTCTCTTGCGCTGTTTGCGACATGGTTTTTCCTGACATAATAGAATTGAAAGCGCATATTCGTAGACATAAAGGTAAAAACTTATGCGGTTTTTGTCTAAAGATTTTCATGAATACATCTCAGCTATCCGATCATGTGCGTGCGATGCATAAGAAAGATCTTCAATGTCAATTATGCTATAAGATATTTATGacgaaaaacaaattatgtaaGCATATTAAATTGCATGTCAGGCAATTCGAATGCTACATTTGCCATAAAACTTATAACGATCGTTCCACACATTTTCTGAACAAATTGCGCTTACTGAAACATTTGGGTGTACATCCGCGAATAGGAGGACACATTTGTGATATATGTCATAAAAGCTTTCAAAGGTCTGATTCATTGAGTGCgcataaattaatacatagtgatttaaaacaatttgaatgTATCATGTGtaaaaaaacgtttaaaagAATACGGGACATGCAAAATCATATGGAAAATCTTTCTAAACCAACACATCAACGTGATAAATGCCAGAATACGTATCGTCTACGGAATAGTTACCAAAATCATATGAGAAttcgttttaaaaatgataacgAACTCACACTTCCGACTAATAATGGTGAAAGagcatttaaatgcaaaatgtgTTCCAAAGCATTTTTTGTACGTGGCAGTTTAAATCGTCATATGGTTGTGCATATAGgctataaaaagtataaatgcGATGTATGTGATAAGGCTTTCAGTTATTCCTCTACTTTAGCTCAACACATAGTTGTGCATACAGcctataaaaagtataaatgcGATGTATGTGATAGGGCTTTCAGTCAATCCGCTGGTTTAGCTCAACACATGGTTTTACATACTGGCGTGAAAAAGTATAAATGCGATGTATGTGATAGGGCTTTCGGTTATTCATCTAATTTAGCTCAACACATGGTTGTGCATACAGGcgtgaaaaagaataaatgcgATGTATGTGATAGGGCTTTCAGTTATTCCTCTAATTTAGCTCAACACATGGTTGTGCATACAGTCGTGAAAAAGTATAAATGCGATGTATGTGATAGGGCTTTCAGTTATGCCTCTAATTTAGCTCAACACATGGTTGTACATACTGGCGTGAAAAAGTATAAATGCGATGTATGTGATAGGGCTTTCGGTTATTCATCTAATTTAGCTCAACACATGGTTGTGCATACAGGCGTGAAAAAGTATAAATGCGATGTATGTGATAGGGCGTTCAGTCAACTCTCTACTTTAGCTCGTCACATAGTTGTACATACAGGCGTGAAAAAGTATAAATGCGATGTATGTGATAGGGCGTTCAGTCAACCCTCTACTTTAGCTCGTCACATGGTTGTACATACAGGCggaaaaaaGCGTGAAAAAGTATAA
- Protein Sequence
- MDVQQKNRNFLSSATSNSCDHDNEGNITVITVEREYQCYVLLKKLVMRKINKYSRNSVSKINKGVQENENHPHTNNTSNSHCSPHTALNTSPDNIFRNRKTFHLSIRDDEESVLRWRARIESIAHKCNFGTNLNLFLVDKFITGMNEDAFYERLDTVTMKTEDMQFEEIVKIALDHEIQLSERSNSSLHQIQDLITQEDELIIMNAETSQNCIRINENVTKKFECYICHTNYNESDEHNVNQKCLIKHFQLAHVEPFTCHICEKHFTTSFKLRCHINEVHLRILQTTNICDVCNESFQTPLILRRHKMLHNDEKPFECIACKKTYRRFIALKIHLQQLCQYRYSTQEPSAEMNPNEVKSMDTDKYSITENYDNKLCEICEDTFLNIYDLRQHLMMVHANDPNSYVTENFPSVVGNECIRCKRKFVSVRDLNAHKSVLCSNNLSCAVCDMVFPDIIELKAHIRRHKGKNLCGFCLKIFMNTSQLSDHVRAMHKKDLQCQLCYKIFMTKNKLCKHIKLHVRQFECYICHKTYNDRSTHFLNKLRLLKHLGVHPRIGGHICDICHKSFQRSDSLSAHKLIHSDLKQFECIMCKKTFKRIRDMQNHMENLSKPTHQRDKCQNTYRLRNSYQNHMRIRFKNDNELTLPTNNGERAFKCKMCSKAFFVRGSLNRHMVVHIGYKKYKCDVCDKAFSYSSTLAQHIVVHTAYKKYKCDVCDRAFSQSAGLAQHMVLHTGVKKYKCDVCDRAFGYSSNLAQHMVVHTGVKKNKCDVCDRAFSYSSNLAQHMVVHTVVKKYKCDVCDRAFSYASNLAQHMVVHTGVKKYKCDVCDRAFGYSSNLAQHMVVHTGVKKYKCDVCDRAFSQLSTLARHIVVHTGVKKYKCDVCDRAFSQPSTLARHMVVHTGGKKREKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -