Csub008507.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- -
- Assembly
- GCA_011634745.1
- Location
- JAABKK010007667.1:19403796-19407032[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.011 0.93 10.7 0.2 1 23 27 49 27 49 0.98 2 31 0.023 2 9.7 5.9 1 19 56 74 56 78 0.94 3 31 0.0093 0.77 11.0 6.2 1 23 84 106 84 106 0.98 4 31 5e-06 0.00042 21.2 6.6 1 23 112 134 112 134 0.98 5 31 5.3e-06 0.00044 21.2 2.1 1 23 140 162 140 162 0.98 6 31 0.00043 0.036 15.2 6.2 1 23 168 190 168 190 0.98 7 31 3.3e-07 2.7e-05 25.0 0.4 1 23 196 219 196 219 0.97 8 31 0.021 1.7 9.8 4.8 1 23 254 276 254 276 0.98 9 31 2.6e-05 0.0022 19.0 2.3 1 23 278 300 278 300 0.98 10 31 0.00047 0.04 15.0 0.3 2 23 307 329 306 329 0.96 11 31 0.58 48 5.3 5.7 2 23 336 356 335 356 0.96 12 31 6.5e-05 0.0055 17.7 1.4 1 23 362 384 362 384 0.97 13 31 0.00028 0.023 15.8 3.5 1 23 390 412 390 412 0.98 14 31 0.00065 0.054 14.6 5.2 1 23 418 441 418 441 0.98 15 31 0.032 2.6 9.3 0.4 1 23 447 469 447 469 0.96 16 31 2.9 2.4e+02 3.1 0.4 1 11 587 597 587 610 0.75 17 31 0.58 48 5.3 3.6 1 23 613 635 613 635 0.97 18 31 0.0044 0.37 12.0 0.2 1 23 641 663 641 663 0.96 19 31 2.9 2.5e+02 3.1 1.4 3 23 671 690 669 690 0.91 20 31 0.00018 0.015 16.3 4.0 1 23 696 718 696 718 0.96 21 31 0.0016 0.13 13.4 8.5 1 23 724 746 724 746 0.98 22 31 2e-06 0.00017 22.5 1.7 1 23 752 775 752 775 0.98 23 31 2.8 2.3e+02 3.2 0.6 1 13 781 793 781 794 0.88 24 31 0.064 5.4 8.3 0.1 1 23 821 843 821 843 0.96 25 31 1.3e-05 0.0011 20.0 0.9 1 23 849 871 849 871 0.98 26 31 0.015 1.2 10.3 2.6 1 23 877 899 877 899 0.98 27 31 0.02 1.7 9.9 8.3 1 23 905 927 905 927 0.98 28 31 3.4e-06 0.00028 21.8 3.1 1 23 933 955 933 955 0.98 29 31 0.018 1.5 10.1 5.3 1 23 961 983 961 983 0.99 30 31 1.3e-05 0.001 20.0 2.7 1 23 989 1012 989 1012 0.97 31 31 0.08 6.7 8.0 0.0 1 23 1018 1040 1018 1040 0.96
Sequence Information
- Coding Sequence
- ATGGAGGAACCAGAAGTAATTCTTAcagttaaaaaatcaaatggaaGAGGAAAAAAGAGATCAACGTCACCATCACCATTTAAATGTGCCCAGTGTGGTTCCGAATTTTccgaaaaacaagaaattcttGATCATATTTTAACGCATTCAACCACTGAGCCCGAATTTCATTGTAAACAATGCGGAAAAACGTTTCCCACTTCAAAACAATACGATAAACATTGTGTATTGCATTCGGATGAGAAGCCATTCCATTGCACAATATGCGATAAGCGATTTTTACATACGTCAACCTACAATACACATATGATAACCCACAAAAATAATCGCCCATATCCTTGTCAGCTGTGCGATAAAAGTTTTTGtcacaaatataattacaatattcatATGAAAACTCACACTGGCGAGAAGTCACATCAATGCAGTGAATGTGGgaaacaatttacaaatacGGCTGGCCTAACACGACACCGAATGTCACACACAGATGATCGAAAATATCATTGTACCATTTGTGATAAACGGTTTTTGCAATCAAGTCACTATCAAcgacatttaaaaattcatacgGGCGAACGAAAATTCCAGTGTGATATTTGTGGAAAAAAGTTTATCGTCTTATATAATCTTCAGAAGCATATGGAACGTGGTCATTTGAGTTTATCGCGTGGTGATGATTGTGATGatcgtaattttaaaaagcCATTGCCCAAACTAAAAGCGACCAAGGCTCCTGAAATTGAAGACGGAAAAAGCTATGATTGTGACCTatgtaaacgaaaatttaattgttcgAAATTGTTAAATcgacatttaaaaatgcacaCCTATTGTTGTCCAATAtgcaagaaatattttgaatcaaCGGCCCAACTTCAACGTCATTTAGAAACGCATGGTGATCGACCACAATTAAAATGTCCAATATGCAATATGATGTTCATACTAAAAAGCAGTTACGATAAACATATTATGGTTAAGCATCAAGACGATAAGCCCATTTCGTGTACCGTATGCAATCAACAAtgttataaacataattataagaTTCATATGATGAAACATATGGGACAAAAAGTGTATCAATGTCAGGTGTGcgaaaaagaatttatacaTGCTAGCAGTTTTATTAGACACAAGGCCAGTCATAATAATGAACGAAATTTCCAATGTTTAATATGTGGCaagaaatttttacaaaatagtCACTACAAAAAACATGCGAAAATTCATACAGGCGAGAAAGaattcaaatgtaaaatatgcAGTAGACAATTTCACGAATCCTATTATTTTCGACGACACATGCTTACAATTCATTCAAGCTTAAATCCATATTTGTGTGAGCAATGTGGAGAAGCATTTGCATGTGAAGATGATCGTAATGTTCATATGAATACTCATGTGTCGGCGGAATTATCTTATGATACTGGTCATGATGAGCATGGCCATAATGAACAGAGCAATGATTACGATAACTATAATCATCATAGTGAACATTTTGGAAATAATTCTTCCGACGATGATTCGCAATGTGATTACAATGGAAAAGTTGAAATGACCAGCGGTATTGATGATAATTATTCCGATAATGGACATTATAATACTTCAGTATCCGATTATAATGCATCATATAACTATGAATCAAGCACCACCTCATCAACGTGGTATTCGTCTCCGCCAGTAGTCGAACCAAAATTAATCATACCCGATATGCAACCACAGCTAAATGAAATTCCACCGAGCAATAGCCATTACGATTGTCCAATATGTGGATTAACATTATCATTAACTGATGacgaaattgaaaaacatatgCTACTCCACAAAGAGTTTTATTGTACGGTGTGCTGCAAAAAGTTTTCTGAAATAAACGAATACAATAAACATCTACTATTGCATTCGGACAAACAGGAGTATCGATGTACTCTTTGTAATATATCGTTTCCACTTCAAAGTACTTACGACAGTCATATAGCCGAGCATCAAGATGAAAAACCTACTGCATGCAAATATTgcgataaattattatacaagcATAATTATGACTTGCATATGATAGGACATTCTGGTAAGAATCCGTATCACTGTAAAATATGTggtaaaaagtttataaacgCGAGCAGTTTTGGGCGccacaaaaaatttcatgacACCGATCGAAAATATCATTGTTCGATTTGCGAGAAACGTTTTGCCCAATTATGTCATTTCAATAAACATATGAAACTTCACACAGCCGAAAAATTATACCAATGTCCAATATGTAAACGAAATTTCTATGATGTCAGCAACTATAAAAAACATATGcaaaaaattcataccattGATAAGCCatttaattgtgaaaaatgtaaaattgaattttcagaTGAATCAATTCGTGATGAACATTTTACTGAATGTTTACTGAAACcggatgaaataaaaatcgaaaaagatAACGATCGAAAGCATTACGATTGTGCTCATTGCGGTGCGaaattttatgaagaaaatgaaattattgaacatATGCTGGAGCACAGTGAAGAGaaacaatataattgtaaaGTTTGCGgtaaaaaatttccaaagaAACTCAACTATGAAAAGCACATACTTATCCATTCCGATAATAAACCATTTGAATGTGAATTATGTAATAAGCGATTTTTACGAAAGAAAACGTACAAAGGTCATTTACTTCGACATCGTGAAGAGCGTCCATTTCCATGTTCCAAATGCAGTAAATCATTTTGTCATAAATATgatcataaaattcatatgatGATTCATGATGGAAAGAAACCATTCGAATGCACCATTTgctcaaaaacattttcacattCAGTTAGTTTAGCCAGACATAAACGAAGTCATGCAGGcgaaaagaattttcaatgtaGCGTGTGTTTGAAAGATTTCTTGCAATCGTGTCATTTGTCACGTCACATGAAAATCCATACGAACGATCGCAAATATCATTGTACGATTTGTGATAAGAAGttcattgttttatataattataaacggCATATGATGAGCATTCATTCAAGTGAACGACCATATTTGTGCGAGCAATGTGGCGAAGATTTTGCTGGAGAGGAGGCTCGTGATGAACACATGAAAACTCATGAAATCAGTTaa
- Protein Sequence
- MEEPEVILTVKKSNGRGKKRSTSPSPFKCAQCGSEFSEKQEILDHILTHSTTEPEFHCKQCGKTFPTSKQYDKHCVLHSDEKPFHCTICDKRFLHTSTYNTHMITHKNNRPYPCQLCDKSFCHKYNYNIHMKTHTGEKSHQCSECGKQFTNTAGLTRHRMSHTDDRKYHCTICDKRFLQSSHYQRHLKIHTGERKFQCDICGKKFIVLYNLQKHMERGHLSLSRGDDCDDRNFKKPLPKLKATKAPEIEDGKSYDCDLCKRKFNCSKLLNRHLKMHTYCCPICKKYFESTAQLQRHLETHGDRPQLKCPICNMMFILKSSYDKHIMVKHQDDKPISCTVCNQQCYKHNYKIHMMKHMGQKVYQCQVCEKEFIHASSFIRHKASHNNERNFQCLICGKKFLQNSHYKKHAKIHTGEKEFKCKICSRQFHESYYFRRHMLTIHSSLNPYLCEQCGEAFACEDDRNVHMNTHVSAELSYDTGHDEHGHNEQSNDYDNYNHHSEHFGNNSSDDDSQCDYNGKVEMTSGIDDNYSDNGHYNTSVSDYNASYNYESSTTSSTWYSSPPVVEPKLIIPDMQPQLNEIPPSNSHYDCPICGLTLSLTDDEIEKHMLLHKEFYCTVCCKKFSEINEYNKHLLLHSDKQEYRCTLCNISFPLQSTYDSHIAEHQDEKPTACKYCDKLLYKHNYDLHMIGHSGKNPYHCKICGKKFINASSFGRHKKFHDTDRKYHCSICEKRFAQLCHFNKHMKLHTAEKLYQCPICKRNFYDVSNYKKHMQKIHTIDKPFNCEKCKIEFSDESIRDEHFTECLLKPDEIKIEKDNDRKHYDCAHCGAKFYEENEIIEHMLEHSEEKQYNCKVCGKKFPKKLNYEKHILIHSDNKPFECELCNKRFLRKKTYKGHLLRHREERPFPCSKCSKSFCHKYDHKIHMMIHDGKKPFECTICSKTFSHSVSLARHKRSHAGEKNFQCSVCLKDFLQSCHLSRHMKIHTNDRKYHCTICDKKFIVLYNYKRHMMSIHSSERPYLCEQCGEDFAGEEARDEHMKTHEIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -