Csub027581.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- CBX1_1
- Assembly
- GCA_011634745.1
- Location
- JAABKK010002575.1:9822-11755[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.011 17 6.2 0.4 12 44 133 162 119 162 0.79 2 10 1.6 2.4e+03 -0.7 0.7 18 43 197 219 184 220 0.73 3 10 0.00035 0.52 11.0 2.6 17 38 225 247 222 248 0.91 4 10 0.056 84 3.9 1.3 18 27 254 263 250 276 0.80 5 10 5.5 8.2e+03 -2.4 0.1 14 26 280 292 269 295 0.75 6 10 3.5e-06 0.0052 17.4 1.9 3 43 298 335 297 338 0.83 7 10 0.00056 0.83 10.4 3.7 13 39 338 361 330 365 0.76 8 10 2.1 3e+03 -1.1 0.1 19 28 372 381 368 382 0.89 9 10 0.00075 1.1 9.9 3.1 1 39 383 417 383 426 0.90 10 10 0.0077 11 6.7 0.5 15 40 428 450 420 452 0.82
Sequence Information
- Coding Sequence
- atGATAACACGCCAACTGCAAAAATGTTCTGATGATTATTCCATTTCTGctaataatgataaaagttTTGTTGAAGAAATTCTTGATCGACGTGTAATACGCAGAAAGGTGGAATACCTGGTGAAATGGGGAGGTTTTTCAGAGAAAGAAAATACTTGGGAAAAACctgaaaatatgaattgttCGATATTAATTAAGCTGTTTGAGTCCAATCAATTACAAAGCGCTCAAGTGTCCAAAGATCGTAAAAATCACGATGAATCAATGGCTGAAGGTGATGAAATTGGTCAGCAAAATGTGTCGGAAGAAGAGaGTTCCAGCGAAAACCAAACTTCTGCGAAACAACAGGATGAAAAGTCTTATTATACTATAGACCAACTACGAGAGCTCTTTTCTAaagataaacaatattttaattgtgttaTTTGCAAGAGAAAGTTTGCGGACGTGTTAAAAATGGAaagacatttaaataaataccataaaaaggcTAAAGCTAAACCGTTTCCATGTCTAGGCTgtgatagaaaatttaatcgtTTATTTGCACTATCCCAGCATACAATCGTTCACACAAAAGAACTATTTATGTGTGATATTTGCAAGAGAACCGACCCTCGTTTAAGTAAATTGAGAGTCCATATTATTGAAGCTCATTCCGGTATCAGAAACTTCGTTTGCAAAATTTGCAATAAAGCTTACACAAGGAATGGACATTTAACTCAGCATATGCTATCACATACCGGTGTAAAAAGTTTTTCGTgtaaattttgcaataagaaaTATAGATTTTCAAGAGAACATCGTCAACACGAAGaatcacataataaaaatagagaaaagCCGTTTCATTGTGATGAATGCGGTAAAGACTTCGCACTTAAACCAAGTTTGAAATCACATATGGCTATTCATTCGCAACAAGATACAAAATACACGTGTGGAATCTGTGGAAAGGAATTTAAACGATtgtcatatttaaatgttcatattagaaaatatcatGTTCGATCAACAAACGTAGTGTATTGTCATCTGTGCGATAAAAGATTCTCTAATCAAAGTAATTTAACTTCGCATTTAATGGTTCATTCGGACATAAAACCGTTTTCTTGCGAATTGTgtgatagaaaatttaaacgtCTATCAGAGGTAAAGGCCCATGTACGTATAGTTCATGATCGATACGTATACTCATGCGATGTTTGTCACAAAAAGTTTAAACACATTTCATCATTAAAACTTCATATGCCTAAACATGATGCAAATAAAGATCGTTACAAGAGTTTCTCTTGTGATGTTTGTGAAAAATCTTTTACAAGATCAAATAGTCtaagaaaacatataaaaattcatttaggATGA
- Protein Sequence
- MITRQLQKCSDDYSISANNDKSFVEEILDRRVIRRKVEYLVKWGGFSEKENTWEKPENMNCSILIKLFESNQLQSAQVSKDRKNHDESMAEGDEIGQQNVSEEESSSENQTSAKQQDEKSYYTIDQLRELFSKDKQYFNCVICKRKFADVLKMERHLNKYHKKAKAKPFPCLGCDRKFNRLFALSQHTIVHTKELFMCDICKRTDPRLSKLRVHIIEAHSGIRNFVCKICNKAYTRNGHLTQHMLSHTGVKSFSCKFCNKKYRFSREHRQHEESHNKNREKPFHCDECGKDFALKPSLKSHMAIHSQQDTKYTCGICGKEFKRLSYLNVHIRKYHVRSTNVVYCHLCDKRFSNQSNLTSHLMVHSDIKPFSCELCDRKFKRLSEVKAHVRIVHDRYVYSCDVCHKKFKHISSLKLHMPKHDANKDRYKSFSCDVCEKSFTRSNSLRKHIKIHLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00285674;
- 90% Identity
- iTF_00285674;
- 80% Identity
- iTF_00285674;