Basic Information

Insect: Catotricha subobsoleta
Gene Symbol: ptc_1
Assembly: GCA_011634745.1
Location: JAABKK010007667.1:11077989-11086613[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.3e-14 2.7e-11 43.6 0.0 1 38 13 50 13 55 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.3e-14	2.7e-11	43.6	0.0	1	38	13	50	13	55	0.91

Sequence Information

Coding Sequence: ATGGGAAAAGCATGCCGAAAAATACGATTAAAATTTACAGAAGAGAATATGGAGAAGGCCATTGCTGCTGTAAGAAATGGTTTAAGCTACAGGAAAGCTGTTAAAAAGTTTTCTGTGCCAAGATCTACATTACAAGATAGagttataagaaaatatgctCCTAAAGGCTATAAgttaattcaaagtcaaaaaatccTTAACATGTCCGGTAATGGCGACTTTACCCTACCACAAGGAAAAGCTAGAGGAAGACGATCAGCCATTTATATGCGATCGTTATTTCAGTCACACCTTCAAACACTTGGCTTTTCTGTACAAAAAAATGCGGGCAAAGTATTATTTGTAGCGATATTAGTACTCAGTACATTTTGTGTAGGGCTTAAAAGTGCAACGATACATTCAAAAGTACATCAATTATGGATACAGgaaggCGGACGATTAGAACAGGAACTCGAATACACTCAGAAAAGTTTAGGAGAAATGGAATCAACGACACATCAATTATTGATACAAACACCAAAAGATCCAGATGCCTCAATATTGCATTCTCAAGCATTGCTTACGCATCTGGAGGTATTACAGCAAGCTACAGCGGTAAATGTTCAGATGTTTGATATAACGTGGAGTTTGCGAGATATGTGTAATGTTCCAACTATACCTCAATTTGATGCACATTTTATTgagcaaatatttgaaaatattattccatGTTCAATTGTAACGCCATTAGATTGTTTTTGGGAAGGTAGTAAGCTACTTGGTCCTGAATACCCAGTTCGCATACCtggtTTCAATGGAAAAGTTCAATGGACTTCATTAAATCCACAGCAAATGCTTGCAAGCATGAAATCGTTAAATCAACAATTTCCATTTGATATGTTAGAGCAATATTTGAAACGAGCTGGAATATCTACTGGATATACTGAAAAGCCATGTTTAGATCCAAAAGATCCATTATGTCCCATAACTGCACCGAATAAAAAAAGTCTCCAGCCACCAGATATTGGTGCTGAACTTACTGGTGGATGTTACAGTTATGCGGCCAAATATATGCATTGGCCAGAAGAATTAATTGTTGGTGGAGTTGAACGTAATCGTACTAGGCATTTAAAAAAAGCTAAGGCCTTGCAAACTGTAATTCAATTGATGACCGAACGCGAAATGTATGAATCATGGAATGGGCACTATAAAGTGCATCATATTGGTTGGACTCCGGAAAAAGCTGCGGAAGTATTGAATGCATggcaaaagaaattttcaaatgaggTCTCTCGAATTATGAAATCGGAAAGTATAACAAAGTCTCACGATATATTTGCGTTTTCCTCCTCGACATTGGATGATATTCTTGGCAAATTCTCAAACCCAAGTCCGATTAGCTTGTGTATTGACATTGCTGCCACACTTGTATATGCCATAATCACATTAATGAGATGGAATGATCCAATTAAAGGACAAAGTGCTGTTGGAATTGCAGGAGTTTTATTAATTGGAATGGCAACCGCAGCTGGCCTAGGATTATGCGCTTTGCTTGGTAGAGCCTTTAATGCTGCAACTACACAAGTTGTTCCGTTTTTAGCTCTAGGACTAGGAGTGGATCATATATTCGTTTTAACACACGCTTATGCCGAAAGCAATAGTAATGATCAAACAAAAGACATTCTAAAGAAAGCTGGTCCAACAGTTCTTCTTAGTTCGATCACTACAATTGCGTCATTTTTTGCCGCTGCTCTAATTCCTGTTCCAGCTCTTAAAGTATTCTGCCTTCAATCAGCGATCGTCATGTGCTTTAATTTGGCAGCTGCTCTACTTGTTTTTCCAGCAATGATTTCATTGGATTTGCGTAGAAGACAGTCAGGTCGTGCGGATTTCTTTTGCTGTTGCTTGCCACCATGGAAACGAAAGCCTAATAATTTGCATAGTAATTGTAACAGTTTAAGTAGCCCAGAACAAGGATTGATAACGTATTCAGCAAAAGATTCATCccgtttttcactttctcaattCGCCTACAAATATTACGCAACATTTATTACCCAGAGTTCAGTGAAATTCTTTGGCATGTTAATATTTACAGGTATAATGGGTTACAGTCTATTTACCGCAATGAAACTACAAGATGGACTTGACCTATTTGATTTAGTTCCTAAAGACACAAACGAGCACAAGTTCCTAAATGTACAAAGTAATATGTTtggattttataatatgtttgctGTGACCCAAGGTGATTTTGAGTATccaacaaatcaaaaattgcTCCACGAATATCATGAAGCATTTGTTCGAGTTccacatattattaaaaatgataatggCGGTCTACCAGAATTTTGGTTGAGTATGTTCAGAGATTGGCTGGTGAATTTGCAAACTGCATTTGATCGCgattataaaagtaataaaattaccCAGGAAAGATGGTTTCCAAATGCAAGTACAGATGCTATTTTGGCTTACAAATTACTGGTTCAAACTGGGCATGTTGATAATCCTATTGATAAAACATTGGTTACGCAAGGTAGACTCGTTGATTCGGATGGAGTTATTAATACCAAAGCTTTTTACAATTATCTCTCAGCTTGGGCATCAAATGATGTTTTCTCCTATAGTGCATCGcagggCAAACTTCGTCCCGAACCAAGACAATGGTATCATGTGCCAAGtgattatgaattaaaaatccCAAAAAGCCTTCCATTAATCTACACTCAACTGCCATTTTATTTGCATGGCCTTGTCGATACACCAGAAATTAGAATACTTATTGGAACAATCCGTGAACTATGTCAAAAATTTGAAGCTCGTGGTCTACCAAATTATCCATCAGgaataccatttattttttgggaaCAGTATATAAATCTACGAACATTTTtagcattaattattttttgtgcatTAAGTGCTGCATTTATATGTGTTGGAGTATTGCTATTATCCTGCTGGGCCGCAGTACTAATTGTCTTTAATGCTGTCGCCACATTAATTCAACTGTTAGGTGTTATGATCTTTTTGAACATTAAATTGTCCGCAATACCAGCTGTTATTATGGTTTTGAGCGTTGGATTGTCTGTTTGCTTCACGGTGCATGTATCACTGggaTTCATAACATCGGTTGGAAATCGTGATCGCCGTGTTCGTTTAGCATTACAACTTGCATTTGCACCAGTTATACATGGAACATTAACATCTATGTTAGCTGTCCTGATGTTATCAACATCaccatttgaatttattgttcGTCACTTTTTCTGGTTACTATTTGCTGTGATGACAATCGGTGTGATAAAtggtttattcttttttccaaTTCTATTAAGTTTAATTGGACCGGCCGCAGAATTAGTGCCATTAGAACATTCTGATAGAATATCAACACCCTCACCACCAACATATCGTCAAAAGCGATCTCATAAAACTATTGTCCATAATAGCCGAcaatcatcaacatcatcagcATCATCTTCATCACGATCATGTAATAAacctcatcatcatcataaacaacatgttaatattaataatgagcCATCGTTAACAACAATCACGGAAGAACCACAATCATGGAAAagttcatcatcatcaatgtCAACGGGCCCAATGCCAGAAACAAATCATGGACCGGAGCTAAAGAGTATTGTTGTGCAGCCCGAAGTTACGGTTGAAACAACACAAACTGGTACTGATCAAAATACAACTAAAGTAACAGCAACAGCAAATATTAAGGTGGAATTGGTGACGCCCGGACGTATTTCGAGAAGTTATCATAATGTTAGTAGTAGTAGCTAG
Protein Sequence: MGKACRKIRLKFTEENMEKAIAAVRNGLSYRKAVKKFSVPRSTLQDRVIRKYAPKGYKLIQSQKILNMSGNGDFTLPQGKARGRRSAIYMRSLFQSHLQTLGFSVQKNAGKVLFVAILVLSTFCVGLKSATIHSKVHQLWIQEGGRLEQELEYTQKSLGEMESTTHQLLIQTPKDPDASILHSQALLTHLEVLQQATAVNVQMFDITWSLRDMCNVPTIPQFDAHFIEQIFENIIPCSIVTPLDCFWEGSKLLGPEYPVRIPGFNGKVQWTSLNPQQMLASMKSLNQQFPFDMLEQYLKRAGISTGYTEKPCLDPKDPLCPITAPNKKSLQPPDIGAELTGGCYSYAAKYMHWPEELIVGGVERNRTRHLKKAKALQTVIQLMTEREMYESWNGHYKVHHIGWTPEKAAEVLNAWQKKFSNEVSRIMKSESITKSHDIFAFSSSTLDDILGKFSNPSPISLCIDIAATLVYAIITLMRWNDPIKGQSAVGIAGVLLIGMATAAGLGLCALLGRAFNAATTQVVPFLALGLGVDHIFVLTHAYAESNSNDQTKDILKKAGPTVLLSSITTIASFFAAALIPVPALKVFCLQSAIVMCFNLAAALLVFPAMISLDLRRRQSGRADFFCCCLPPWKRKPNNLHSNCNSLSSPEQGLITYSAKDSSRFSLSQFAYKYYATFITQSSVKFFGMLIFTGIMGYSLFTAMKLQDGLDLFDLVPKDTNEHKFLNVQSNMFGFYNMFAVTQGDFEYPTNQKLLHEYHEAFVRVPHIIKNDNGGLPEFWLSMFRDWLVNLQTAFDRDYKSNKITQERWFPNASTDAILAYKLLVQTGHVDNPIDKTLVTQGRLVDSDGVINTKAFYNYLSAWASNDVFSYSASQGKLRPEPRQWYHVPSDYELKIPKSLPLIYTQLPFYLHGLVDTPEIRILIGTIRELCQKFEARGLPNYPSGIPFIFWEQYINLRTFLALIIFCALSAAFICVGVLLLSCWAAVLIVFNAVATLIQLLGVMIFLNIKLSAIPAVIMVLSVGLSVCFTVHVSLGFITSVGNRDRRVRLALQLAFAPVIHGTLTSMLAVLMLSTSPFEFIVRHFFWLLFAVMTIGVINGLFFFPILLSLIGPAAELVPLEHSDRISTPSPPTYRQKRSHKTIVHNSRQSSTSSASSSSRSCNKPHHHHKQHVNINNEPSLTTITEEPQSWKSSSSSMSTGPMPETNHGPELKSIVVQPEVTVETTQTGTDQNTTKVTATANIKVELVTPGRISRSYHNVSSSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -