Csub014284.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- bab1_2
- Assembly
- GCA_011634745.1
- Location
- JAABKK010002138.1:9607-13543[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.4e-17 1.6e-13 50.7 0.0 2 45 480 524 479 524 0.95
Sequence Information
- Coding Sequence
- ATGTCCGTGCAGCAATTCTGTTTGCGCTGGAACAATCATCAGCCGAATTTTATATCAGTGTTTTCATCGCTTTTGCATAATGAAGCTCTTGTTGACGTTACTTTAGCCGCCGAAGGAAGACAGCTTCAAGCCCATAAAGTTGTATTATCTGCGTGCAGTTCTTATTTTCagTCCTTGTTTACCACAAATCCCTGTCAACATCCAATAGTTATACTGAAAGATGTACAATACAATGATTTAAAGACTATGGTCGATTTTATGTACTATGGAGAAGTCAATGTTTCCCAAGAACAGTTGCCACATATTTTAAAGACAGCTGAAatgcttaaaattaaaggaCTTGCAGAAATGCCGGATCCAGTATCATTGACAAAATCTGAGAGCAAATCATCCGATCAAACCGAACAGACAGCACAAAATAGTGGCGGTGAATCGATGTGGGGTAGTAGTGAATcacaacaacaatatcatcaacagcaacaacatcaacatcagcaacaacagcaacagcaacagagACGATCACCATCGCCAGGTGCGATATCACCGTCAGCAAACCGAAGGAAACGTCTTCGAAAATCATCAACAGGTACATCCaaagGATCAGGTTCTGCTTCTACTGAACGAACATCAGAAGAACATAGCAGCATTGAAGGACAAACAGGTTTAAATATGTCTCAAATAGATCCATTTGGAGGTCCGACTCCAACAAATCTATCACAAAATGTGaccaaccaaaaattaattaaagagaGCTGCAGTACAGAGACTACACCACCTCAACAACATGATTCATCGCAGGAAAGTGTTGATGATGGTAATCATTCACATCACATTCATCAAATTTCTTATATTAAGAAATCTGACAACGATATGCCGAATGTGTCTCAACAAATGCCCATAGATATAGCAAGCCCCACAACACCTTCTGATCATGGAGCTTCTTCCGTTAGTTGTTCACAATCACAAACACCTCATTCAGGTGTGCAATGGACTGTAGTCGACTCAAATTATCCACGATTTGCATTATCAACGTGTCAAACAAATGTTGGAATGTCAGCTGGTAGTGGTGGACATAATAGTAATCAGAACGAGAGTCAACACACGACAAGTACATCATCATCAAATACAACAGTGTCGTCCAACCATACGCAAATGCAATATCAAGGTTCATCTTATGCTGGTGGTCAAATGATATCATTGAATCCAAATAACTTAGTGAATAGTTATCCAGCAAGCTTATCAACGCCAACATCACCACAAGAAAATGATTCAAATATGGTACAATCAGTTTACAGTCAAGGACCTACGCCAAATCAATCACCAGTTCAAATGGgtggtaataataatagtggCCAGCAACAAACAACATCGTCCTCATCATCTTCATCACAAGCGGCACCACAGAAAAGAAAACGTTCTGTTAATCCGCAAGGTGATGAAAACTTTCTTCGTGCACTGGAAGCGGTTCGTTTTGGAGGCATTGGTTTTTGTAAAGCAGCTCGTATGTATGGCGTTAATAATCGAACACTTTggttagaatataaaaaacgtGGTTATCCAATTAGTCGTCCAAGcataaaaaatcgaataaaattagAACCAAATATGACACCTCCACCATCATCAACCCCAACCAATGAAGAAAATACTTCAATGGAGAACTATGAACATAATATGACGTCAGCTCAACAACCAACATTAAATATGAGTAATGTTCCGCCACCAGCTGAAACGCCAACATCTATCATGTGCCCACCACATGCACATCCAATGGGTGTTATGAGCTTTTTAGATACCAGACATGTGGAATTCGCACCTGGTTTACATCAAATGGCTCGACAAAGATATCCCGATGGAGCGGTTAATGTAAATCCATCGGCTATCAATTTGCAAggacttaattttaattcaatgtaa
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVFSSLLHNEALVDVTLAAEGRQLQAHKVVLSACSSYFQSLFTTNPCQHPIVILKDVQYNDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPDPVSLTKSESKSSDQTEQTAQNSGGESMWGSSESQQQYHQQQQHQHQQQQQQQQRRSPSPGAISPSANRRKRLRKSSTGTSKGSGSASTERTSEEHSSIEGQTGLNMSQIDPFGGPTPTNLSQNVTNQKLIKESCSTETTPPQQHDSSQESVDDGNHSHHIHQISYIKKSDNDMPNVSQQMPIDIASPTTPSDHGASSVSCSQSQTPHSGVQWTVVDSNYPRFALSTCQTNVGMSAGSGGHNSNQNESQHTTSTSSSNTTVSSNHTQMQYQGSSYAGGQMISLNPNNLVNSYPASLSTPTSPQENDSNMVQSVYSQGPTPNQSPVQMGGNNNSGQQQTTSSSSSSSQAAPQKRKRSVNPQGDENFLRALEAVRFGGIGFCKAARMYGVNNRTLWLEYKKRGYPISRPSIKNRIKLEPNMTPPPSSTPTNEENTSMENYEHNMTSAQQPTLNMSNVPPPAETPTSIMCPPHAHPMGVMSFLDTRHVEFAPGLHQMARQRYPDGAVNVNPSAINLQGLNFNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00285569;
- 90% Identity
- iTF_00285569;
- 80% Identity
- iTF_00285569;