Csub027852.1
Basic Information
- Insect
- Catotricha subobsoleta
- Gene Symbol
- -
- Assembly
- GCA_011634745.1
- Location
- JAABKK010002020.1:3382-4803[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.6e-05 0.079 13.3 0.0 4 36 254 286 251 291 0.85 2 4 9e-10 2e-06 28.1 0.0 4 44 303 343 303 344 0.88 3 4 0.00021 0.45 10.9 0.0 23 39 370 386 358 389 0.88 4 4 2.7e-12 5.8e-09 36.2 0.1 4 36 411 442 410 444 0.95
Sequence Information
- Coding Sequence
- atgactAAAGAAGAGAATgtgcataatataaaatggctGGACTACACACAGAATTTGATGGCAATTCAGAAAGAAATCTTTGACAATCCAATTCAATatgatgttattattatatcagcTGAaggaaaatcatttaaatcacACAAACTCATTTTATCTGGAAGTAGTgagtttttccatttaattctAAAGGATGTTCCCAATTCAGAATCACCAACAATTCATCTACCTGATGTTGACTTAGTTATTTTAGAACCATTGCTCGGCTTTATGTATACTGGGCAGGCATTTGTTTCATCAAAACACTTAACACAGTTTTTGGAtatgtgtaattttttgaaaataaaaggttTCATTAGTTGTGATTGTTCGGTGAATGggattaaaatgaatattgctAAAGATTCTGATACAGATAAAGATATTTATGAAGATGTTAATATAGTTGAAACAATTCCACCTGATACTGATAAAGAAACGGAAGAGAGCTCAAATACTGATCAAGCTTACATTATATTGGATGATTTTCCAATTAAAGAATATCTTTCTTCTGATGATGAAATACCAGCAGAATATTTAGAAAGTGAAATGCTTGACGAAAATTCAATAAGTGAAGATGATATAATGAATTCAACGGTTTTGACTGATTTAAAAGTAGAACCACAAAGTACCAATAGCACCTGCAATGATGATAGTTTTCAAAAAGACACAATTGAAAAAGAAGGAAGTAAAATCAAAGTAACAAAAcgtttaaataatgaaattgaaagagCGTTTAGTGAAATTTCTACAGGAAAGACCATTCATCAGCTTTCACTTGAATACAAAATACCAAAATCCACGCTATACCATAAATTTCGTAACAATGACATCTTGAAAAATGATTATCGTTCAGAACGGAAATGGGCACTAGATCAAGCTGTTAGTTCCGTTATTCAACAAGGACTCAGTTTAAAGAAAGCAGCTGATCGTTTTTCTGTTCCCAAAACTGCAATATGGCGTGAACTACGAAAAAGTGAGCACTATCAGCCGCCAAACAAAGAAACAAACCAGGCCCGATTAGAAgcccaaaatgaaattatgttgGGAAAGAGTTTAACAAGTATTAGCACAAAATATGGAATTCCCATGACAACATTACATCGCGACAAGAAACGATTATCCGCTGAGGGTAAATTGCCTGAACATTGTAGAGTTAAGGACCGCACTGAGAACTCTGAATATGGTAAACGTTTGGAGAAAGCTCTGCAGGCTTGTCGACAAGGAATGTCACAATACCAAGcgagtaaaatttataatattccaaAGGCTACAATGTGGCGATATGCACATGCGCTACTGAGAGCTGataaacaagaaaatgaaCTGGATAGAGATGAAAACTATGATGAGATTCATCAGGAAGagcatattaataattaa
- Protein Sequence
- MTKEENVHNIKWLDYTQNLMAIQKEIFDNPIQYDVIIISAEGKSFKSHKLILSGSSEFFHLILKDVPNSESPTIHLPDVDLVILEPLLGFMYTGQAFVSSKHLTQFLDMCNFLKIKGFISCDCSVNGIKMNIAKDSDTDKDIYEDVNIVETIPPDTDKETEESSNTDQAYIILDDFPIKEYLSSDDEIPAEYLESEMLDENSISEDDIMNSTVLTDLKVEPQSTNSTCNDDSFQKDTIEKEGSKIKVTKRLNNEIERAFSEISTGKTIHQLSLEYKIPKSTLYHKFRNNDILKNDYRSERKWALDQAVSSVIQQGLSLKKAADRFSVPKTAIWRELRKSEHYQPPNKETNQARLEAQNEIMLGKSLTSISTKYGIPMTTLHRDKKRLSAEGKLPEHCRVKDRTENSEYGKRLEKALQACRQGMSQYQASKIYNIPKATMWRYAHALLRADKQENELDRDENYDEIHQEEHINN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00285628;
- 90% Identity
- iTF_00285628;
- 80% Identity
- iTF_00285628;