Cpin019049.1
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- -
- Assembly
- GCA_963556745.1
- Location
- OY750781.1:5497414-5511815[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2e-06 0.00015 22.5 2.1 1 23 275 297 275 297 0.98 2 11 0.047 3.4 8.8 3.0 3 23 307 328 305 328 0.92 3 11 0.29 21 6.3 0.1 1 23 332 355 332 355 0.93 4 11 0.0013 0.096 13.7 3.3 1 23 430 452 430 452 0.99 5 11 0.0073 0.53 11.3 1.6 1 23 460 483 460 483 0.97 6 11 0.0004 0.029 15.3 2.7 1 23 514 537 514 537 0.98 7 11 2.1 1.5e+02 3.6 2.4 1 23 541 564 541 564 0.84 8 11 0.07 5 8.3 0.4 2 23 655 677 654 677 0.96 9 11 3.2e-06 0.00023 21.9 1.3 1 23 686 708 686 708 0.98 10 11 2.8e-05 0.002 19.0 0.7 1 23 714 736 714 736 0.97 11 11 2.1e-05 0.0015 19.4 4.6 1 23 742 765 742 765 0.98
Sequence Information
- Coding Sequence
- ATGCGAGAAGTAAAAGCGTGTATAGTATGTTTCACAATGGATGTCAAGTTGTACTCCATGGATAAAAATCAATTGCGGCAACAGTACAATTTGCTAACAGGGCTCCAGaTAAATAAAGGCAATGGAATGCCGGAATATTTATGTTATCAGTGCTATAGCTATATAAATAGCTTTATAAAGTTTCGTGACAAGTGCCATAGagcttattttgttttagaagAATTACTTGAAAAAGATAATGAGATAAAAAAGGACAGATTAGTTGCAGTAGATCGAGACACCATCAGTATTAATCCTTACCTATCATACTTAGATGTAAACAAAGCACATTATGAAGAACTTAAGTTTCAATGGGTTAGAAATAATCGTAATATAAATTTAACAACTGATATAATACCCGTTGTGACCCACACAACTCTTAATAAAGAAGCGATGATTGATGAAACTTTTGCAAATGGAAGCTTTACAAAACAGGCCAATAACTATGTAAAGAAAGAGAGTATGGGTATGATAGAGATTAACTTCAATGCCCCCATAGATAGTTCTTGTAAAGACGATGATCTGAATGCACAATCAACATCTGGTTATAATGCTGACAATACTCAAATCCATGAAGATAATGACAATGATAACTTTTTCAATAGTGATGATGAAGGTAGCATTCGAAATGTGCAGATTCCTATTAAgagtatagcaaaaaaattaaaggaaCCAGAGGCGGATGGAAGCATTCTTGATGCGGAGTATGCGACTATGCATGCAATCTCAAGGAACGAAGCTCAAGCTGCAGTAGAGATTATGAAAATATTCGGGGTTGGGAAACATAAATGTAATGTATGTGACAAACCTTTCAGTAATGAGAATCGTTTGAAGATTCATATGCGAATGCATGACCAGTATATCAGCGGCAGCCATTTGTGTGAAATATgccaattttattacaaatcaaGCTTCTTGTTAAAAACACATATGACAGAAAAACATATGTACAAATATGTGTGTAAAAAGTGCCCTGAAGTTAGTTTTGATAGGCCAATGGCAAAACAGCACTACATTTCGGCTCACTTAGAAAAACGTAGAAAGAGTAAAGCAGAGTGGGATGTGAGCCGGCCAACTTGGCTGAGTACGAAAGGAGGGAAGCGTATCAAAGGGGTATCAGCAGTCAAAGTAGTGCGCAAGCCAATTAAGAAACCCGATGACTTCCTCGTATATACACCTGTCCGTCAAGAAGATCAATACTTGATAATCCAAGAGAGGAAAAACTCAAGGAATTATATGGAGGCACCATTCAAATGTGAACTTTGCTTCAAAGGGTACAGAGAGCAAATGACGTATAGCAAACATATGAGAAAACATGACCcgGCATTTTCCGGTAACTACCAGTGTGATATGTGCAAATTATATTTCAAGGATGCGCGAAAGATATACAAACATATGACTATTACACATCTGTTTAAGTTGTCTTGTCAGTTTTGCAGTTATGTGTGTTTCAACAAgGGCCAAGCACACACGCATTAcatgtttcataaaaatgtcaCATATAAGTGTCCTCATTGCCCCATggaatttaaGAAACAGTCGACGCGGCTGACCCACGTCCGGATCAAGCACCCATCCTCGTTCATCTGCAATCTGTGCGGGCACTCGTACGTGAGCGATACTGGACTCTATTGCCACAGGCAGATTTCACATACGGCGGAGGAGTTAGAGCTCAGCTCGCAGATGCAAATGGACACAAGCAGCGAGAACTACTGCTCGGAATGCGACGTACTGTTCTTGAGTCAAGCGGCGTTCGAGACCCACCTCGGCAGCTCAAAGAAACATGCCACTACAAACCAATCCATAACAACGTCGGTCCGAGAGCGCGCGCGGCTGACACGCGCCAGGAAGCGGCCGGCGGGCCGCCCGCGCCGCCTGCCCGGCGACTCCGACATCGTCAACAACGGCATCGTCACTTCTACCAGCTGCGAGATTtGCAACAAATTCCTTGTGAACGACGTGCAAGCCCGCAAGCACTACCAGACTGAGCATCCGGGCGCGGAGTACCTCAAGCGGTACATGTGCGACGTCTGTGGACACACCACTAAGCAATACGCGAACCTTATGGTTCACATGCGAACTCACACTCATGAGAAGCCGTACGAGTGCCCGCACTGCGACCGCCGCTTCAGCATGCCCAGCAACCGCGACCGGCACATCGTGGTGCACACTGGAGAGAAAAAATACCAATGCCATCAATGCCACCGTCGTTTCACCCAAAGCAGCGCTGTCAAACTGCACATACAAACAGTACACCTAAAGATACCATACGCTCCCTGGGATAAGAAGAACAGGAAACGACGCAAGGAGCTCGAGGGGGCTGCCGGCCCGGTTAGCTCTGTCAATGTGAATCTACAACCACAGCCTAAGCTTATACTCGATCAAGACTATTTAAACGCTTACATTAACTACAACGATGAGTAA
- Protein Sequence
- MREVKACIVCFTMDVKLYSMDKNQLRQQYNLLTGLQINKGNGMPEYLCYQCYSYINSFIKFRDKCHRAYFVLEELLEKDNEIKKDRLVAVDRDTISINPYLSYLDVNKAHYEELKFQWVRNNRNINLTTDIIPVVTHTTLNKEAMIDETFANGSFTKQANNYVKKESMGMIEINFNAPIDSSCKDDDLNAQSTSGYNADNTQIHEDNDNDNFFNSDDEGSIRNVQIPIKSIAKKLKEPEADGSILDAEYATMHAISRNEAQAAVEIMKIFGVGKHKCNVCDKPFSNENRLKIHMRMHDQYISGSHLCEICQFYYKSSFLLKTHMTEKHMYKYVCKKCPEVSFDRPMAKQHYISAHLEKRRKSKAEWDVSRPTWLSTKGGKRIKGVSAVKVVRKPIKKPDDFLVYTPVRQEDQYLIIQERKNSRNYMEAPFKCELCFKGYREQMTYSKHMRKHDPAFSGNYQCDMCKLYFKDARKIYKHMTITHLFKLSCQFCSYVCFNKGQAHTHYMFHKNVTYKCPHCPMEFKKQSTRLTHVRIKHPSSFICNLCGHSYVSDTGLYCHRQISHTAEELELSSQMQMDTSSENYCSECDVLFLSQAAFETHLGSSKKHATTNQSITTSVRERARLTRARKRPAGRPRRLPGDSDIVNNGIVTSTSCEICNKFLVNDVQARKHYQTEHPGAEYLKRYMCDVCGHTTKQYANLMVHMRTHTHEKPYECPHCDRRFSMPSNRDRHIVVHTGEKKYQCHQCHRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEGAAGPVSSVNVNLQPQPKLILDQDYLNAYINYNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00035102;
- 90% Identity
- iTF_00035102;
- 80% Identity
- -