Cpin022906.1
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- -
- Assembly
- GCA_963556745.1
- Location
- OY750788.1:6203498-6229753[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.8 5.6e+02 1.8 1.9 2 15 57 70 56 71 0.86 2 14 1.8e-05 0.0013 19.5 2.4 1 23 968 991 968 992 0.97 3 14 0.024 1.7 9.7 0.8 1 23 998 1020 998 1020 0.98 4 14 0.00097 0.07 14.1 6.8 1 23 1051 1073 1051 1074 0.96 5 14 0.002 0.15 13.1 0.6 3 23 1081 1102 1081 1102 0.97 6 14 1.8 1.3e+02 3.8 0.0 1 19 1109 1127 1109 1129 0.94 7 14 0.091 6.6 7.9 0.0 3 23 1137 1158 1136 1158 0.92 8 14 0.056 4.1 8.6 0.2 2 19 1184 1201 1183 1203 0.96 9 14 5.1 3.7e+02 2.4 0.1 3 23 1215 1235 1214 1236 0.82 10 14 0.00067 0.049 14.6 0.8 3 23 1243 1264 1242 1264 0.97 11 14 0.00079 0.057 14.4 3.1 3 23 1314 1334 1313 1334 0.98 12 14 0.00048 0.035 15.1 0.4 1 23 1340 1362 1340 1362 0.98 13 14 1.9e-05 0.0014 19.5 1.3 1 23 1368 1390 1368 1390 0.96 14 14 0.00047 0.034 15.1 0.8 1 23 1396 1419 1396 1419 0.96
Sequence Information
- Coding Sequence
- ATGACCGAGCCCCCTGATCAGAACGTTACATCGGGGGACTTAGGCTTCGACCTGAGTCCCCCCGTGGGTTTCAATGTTATTGTTCCCGATATGGGAAATGAAATGGATACTGATGCATCAGTAAGCAGTGTAGGTTCAGGATCTCGAAAGAGATTAAAAGTTAAGAAAGTGTGCAAACATTGCAATAAGAAAAGGAAACGGACTTCTCATCAGGGAAACAATGATCTCGATTGTCAATGTTCTGGTCACGATTCATTGTTAAACAAAAGTACTGACAGTGTTTTTATAAATCCTCAAAACATTCCTAACTCGAGTacaaatgataatgataagaaTATAAGTGACTCCAACTCGGTTCCACAACCAACTAATCCCACACAGGCAGTTGAATTAGGCCGTAAGCAATATGTTTCCACAGATGTGTCTCCATATTTGATCCATGTTCAAAGAACTGAAACTTCTCCTAATGATGGGAGTTATCTGCACCCAATAACTTTTggcaattttcttaaaaaaactgacTTCAAGAATATTATACCGGGCAGCGTCAAACGTATTGGCAGAAACAGATGCACTGTGTCTTTTTCTACCATTCATGATGCTAATGGCTTTATTAACAGCAACAAGTTGAAAGATTTTAAACTGCGGGCTTTCATTCCCACTTTTAATGTGACAAGATTAGGCATTGTTCGAGGAGTTCCAGCTGAATGGACTCCtgaagaaattaaagaaaatgttacaGTTCCAATTGGGTGTGGCCAGATCATTAAAATCAGGCGTCTGAATTATAAAGTGAATGTTAATGGGTCAGTGATTTGGAAACCATCTCAGTCAGTAGTTTTCACATTTGATGGACAAGTTCTTCCTAAAAGGATATATATTTGTTACAATGCATTACCAGTAGAACTGTATACCTATCCAACCATTCAATGTTATAATTGTTGCCGTTATGGGCATACTAAGTTAAATTGCCGGTCCCGTCCTAGATGCTTTAAATGTTCTCAGGAACATAAAGGAATACCGACTCGTCGTACTAAACCTAACGAAAATGCAAGTGCGGTTGACTTGTCTATTTGTAATCCTGGATTAGCTTCAGAGATTACTTGGTTTCGCCTTAACTCAACTTTTGGTAGTGATCATTTCCCCCTTATTATGAGTACCCCTATAAAAACTCCTTCTGGTGCTAATTACAATCCTCGCCTCAAACATAGATTAACTCAATCTGAAAAAGACTGGGAGAAATTTAAAAGTATAGTCCATGGCAAAACTAAAGACCTTCCTAACATTAGTCAGTCAGGAGTAACTTTCTGTTCTGAAGCATTGGCCAAGTGTCTTATAGAAGCAGCAGATGAAACATTTCCTAGAAAAGCAGATTCTTTTATGGATCATTTAGCACCACCAACTGTTGCAGAGGCATATGATTCTATTTCTTTTAACTTACCTCTAACAAAATCTTCACTTAATGATCCATTCTCCCTTTCAGAACTAAAGGGGGTGTTAGATAGTGTAAAAGATAGTTCACCTGGTGAAGATGGGGAGGTTCCTCTTTCCTGGAGAACACAAATAGTGGTTCCAATTTTAAAACCAGGCAAGCCTTCGTGTGACCCGAAGTCGTATCGTCCAATAGCTTTGAGttctattttaaTGCCTACTAATCCTCTCCTTATCGGACTCTCGAAATACCAATTACTTCGAAGACGTGTTTGTGAAAAACACTTCGACAAACAGCAGTTTGACGCTGAAGGCAGAAGACTACGTTACTCGTATCCGTGTTTGTTTGCAGACGACGAAATAGCACATGGTGTACCTTTGTGTTCCCCTGGAACTGccgcatTTGGCTGCTCGTGCATTGATGAGTTAAAATTCAAAGATCAAGCTACAGTTAACCACAAGACTGATTATAAAGCTTGTGATACTTTGAATGATCACAATTATTACAAAGAGTCtgtggatgatgatgatgatgatgatgcagACACAGTCATCAGAAGAGCAGAAAAAGCAGCTGAATGTTCTGTCCAAGATGGAAAGAAACCTcCGCCATCACCGTCGAAGTCCGTAACACCACTACCGCCTTCCTCCCCGGACTCGACGCCAGTTTCCCCCGCCGCTGAAACATGTGAAGTAGACACTGAGTCTTTAGAACCAGCAGCTGAAGACTACGAGGAGATGTTCGTGTCAAAAGTCATGGTCAAGTCTGATTCGAAAATGTCGAGTCGTATTTTACCACAACAGAAATTAGTTTGGATTGAAACCAAGGGCGTGTCTGAGAAAGTGCGTGCGTGTCGCGCGTGCCTCGCCACAAATATGCGGTTGTTTGAACTCAAAGACAACATAAAATCTACTTACGAAGAATTCGTTGGAAGCCcgGTGTCTGTCTCGGACAACCTGCCAAAGTACCTCTGCACACACTGCATGGTGCTCCTTACAAAGTTCAAGAATTTCAAGGAGAAATGCCTGCGCGCGCAAGAGTTACTTCACAACATTGATGGCATCAAAATGTTGAatacaaaattcatcaaatcgGTTGACCGGCCATTTTACAATCTCCATAACAACTTATCGATATCAAGCCCAGTATTCATGGAAACCGATTACATCAAAGAGGAAATAGACTTATTAGGTGAAGAACCGGTTCTAGTAAAGCAAGAAACCCAATTAAAAACTCTTGATGAAACTAAACCTGAAGATATCAACATGGAAGAAGTACTTGATTACGTGATGGATGACGAGCAGTATCTAGAAGAAAGCGAAGGAGAAGTGGAACcgaagcaaaaaaacttttttgaccgGGAAGCTTACGAGATAGAATATAATATGGATATAACCTTGCTCACTGAAGAGGAACAGGTTTTGGAAATTGAAGCACGGAAACAGTCGCAGAATTTTCTGAAATCAAACTTTAGGTGCGAGGATTGCGGTAAAGGATTTAATTCGAATGAGACGTACACAACCCATTATAACACTATACATCACCCGAGTTTGGGGCAATTTGAATGTCAGCTCTGTAAATCAAGATTTTCGAGCAAGATTCGAATGAACGCTCATATAATCAGCCACAAATACAGGTACAACTGTCGCGAATGTGAATTTACCACCATGAGGCGATGTTCCGCGAGCAAACATAGAGATTACCATATGGGAGTCCTATATACTTGCCACATTTGCAACAAAGATTTTGCCAAACACACATCACTATTATCACATACAAGGATCCATCACCCATCGCAAGGTGTCTGGTGTAGATATTGTGGAGAATCATTTATAAGTGAAATCGGTTTAAAAACTCATAGGAGACTTAAACATGCTAATATGATCACCGAGTTCGAATGCCAAGCTTGTGGTGAAATTTTCTTATATCAAGACGCTTTAACCGTTCACAATTCAGAGGTTTGTGCCCCGAACCCATGTGCATTCTGCGGTTATTCTTATGCCAGTGATAAGTTGTTGCAAAGTCATGTTCTAGAAGTTCATAGAGGGAAAGTTGTGAAGAGTGTTAGACCACAAGCGTCTCAAACGGCTAAAAAAGCTAAAAGAAAGGATATGAAGAAATGTGAGCTTTGCGATAATATGTTTAATAGTGAAACTGCGTTGGAGAGACATAGTGAGTTAATGGAGGGGGCTTGTGGGGGGATGAGAGCTTGTGTCGAGTGCGGGGAGAGTTTCTTGATGGGGGACATGTTGAAGGAACATGTTATCGACCATCATTCTGAAGTTGAGATGCTGTGTCCCCGGTGCAACAGAACATTcgagagcgagtcggacttcaACGATCACTACAAACGTGTTCACATGAAGAAAGGTCCTCCCCGCttaatagGGACTAAAACATGGGGGGTTACGGTGTTGAGTGACGGACCTGTGATCGCGGAGAAGGCCGGGCCCGAGGAGAAAGAATCTGAGCCGGTCAAGACTAAACCTAAAGGGACTCCGTCCTTTTGTGAAGTTTGTGGGAAGCAGTGTGCGAGTAGCGTCCACCTGACGTACCACCTGCGCATGCACACGGGCGAGAAGCCCTATAAGTGCGCCATCTGCCAGAAGGCCTTTGCCGTCCCCAAATTCTTGAAGGAACACTTCAAAGTGCATACTGGTGAACGGCCGTTCGACTGCGACTTCTGCTCGAAAGCTTTCAAGTCTAAATCTGCCCTCAACAGGCATAAGTTGATTCACACCGGCGAGCGTCGTCACATCTGCTCGATCTGCGGCAAAGATTTCCTCACATCCTCGGACGTTAAGACCCACATCAAGACTGTTCACATGAAGATCGTCGGCCCGCCGCGCATCAGGAAGCCGCGGGTCGAGAGGGAACTCCAACAAGTGCACGACGTGCAAATACAATACATTAATGAATGA
- Protein Sequence
- MTEPPDQNVTSGDLGFDLSPPVGFNVIVPDMGNEMDTDASVSSVGSGSRKRLKVKKVCKHCNKKRKRTSHQGNNDLDCQCSGHDSLLNKSTDSVFINPQNIPNSSTNDNDKNISDSNSVPQPTNPTQAVELGRKQYVSTDVSPYLIHVQRTETSPNDGSYLHPITFGNFLKKTDFKNIIPGSVKRIGRNRCTVSFSTIHDANGFINSNKLKDFKLRAFIPTFNVTRLGIVRGVPAEWTPEEIKENVTVPIGCGQIIKIRRLNYKVNVNGSVIWKPSQSVVFTFDGQVLPKRIYICYNALPVELYTYPTIQCYNCCRYGHTKLNCRSRPRCFKCSQEHKGIPTRRTKPNENASAVDLSICNPGLASEITWFRLNSTFGSDHFPLIMSTPIKTPSGANYNPRLKHRLTQSEKDWEKFKSIVHGKTKDLPNISQSGVTFCSEALAKCLIEAADETFPRKADSFMDHLAPPTVAEAYDSISFNLPLTKSSLNDPFSLSELKGVLDSVKDSSPGEDGEVPLSWRTQIVVPILKPGKPSCDPKSYRPIALSSILMPTNPLLIGLSKYQLLRRRVCEKHFDKQQFDAEGRRLRYSYPCLFADDEIAHGVPLCSPGTAAFGCSCIDELKFKDQATVNHKTDYKACDTLNDHNYYKESVDDDDDDDADTVIRRAEKAAECSVQDGKKPPPSPSKSVTPLPPSSPDSTPVSPAAETCEVDTESLEPAAEDYEEMFVSKVMVKSDSKMSSRILPQQKLVWIETKGVSEKVRACRACLATNMRLFELKDNIKSTYEEFVGSPVSVSDNLPKYLCTHCMVLLTKFKNFKEKCLRAQELLHNIDGIKMLNTKFIKSVDRPFYNLHNNLSISSPVFMETDYIKEEIDLLGEEPVLVKQETQLKTLDETKPEDINMEEVLDYVMDDEQYLEESEGEVEPKQKNFFDREAYEIEYNMDITLLTEEEQVLEIEARKQSQNFLKSNFRCEDCGKGFNSNETYTTHYNTIHHPSLGQFECQLCKSRFSSKIRMNAHIISHKYRYNCRECEFTTMRRCSASKHRDYHMGVLYTCHICNKDFAKHTSLLSHTRIHHPSQGVWCRYCGESFISEIGLKTHRRLKHANMITEFECQACGEIFLYQDALTVHNSEVCAPNPCAFCGYSYASDKLLQSHVLEVHRGKVVKSVRPQASQTAKKAKRKDMKKCELCDNMFNSETALERHSELMEGACGGMRACVECGESFLMGDMLKEHVIDHHSEVEMLCPRCNRTFESESDFNDHYKRVHMKKGPPRLIGTKTWGVTVLSDGPVIAEKAGPEEKESEPVKTKPKGTPSFCEVCGKQCASSVHLTYHLRMHTGEKPYKCAICQKAFAVPKFLKEHFKVHTGERPFDCDFCSKAFKSKSALNRHKLIHTGERRHICSICGKDFLTSSDVKTHIKTVHMKIVGPPRIRKPRVERELQQVHDVQIQYINE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -