Basic Information

Insect: Catoptria pinella
Gene Symbol: -
Assembly: GCA_963556745.1
Location: OY750788.1:3609297-3627037[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0068 0.49 11.4 3.7 1 23 312 335 312 335 0.94

2 11 0.01 0.73 10.9 0.4 1 23 342 364 342 364 0.98

3 11 0.5 36 5.6 0.9 1 23 368 391 368 391 0.88

4 11 0.28 20 6.4 1.8 1 23 398 420 398 420 0.82

5 11 6e-06 0.00044 21.0 1.2 2 23 425 447 424 447 0.97

6 11 9e-05 0.0065 17.4 1.8 1 23 453 475 453 475 0.97

7 11 0.00099 0.072 14.1 1.4 3 21 486 504 485 509 0.93

8 11 0.00011 0.0078 17.1 2.1 1 23 517 540 517 540 0.94

9 11 0.00095 0.069 14.1 0.7 1 23 545 568 545 568 0.97

10 11 1.1e-06 7.7e-05 23.4 2.7 3 23 577 597 576 597 0.99

11 11 9.7e-06 0.0007 20.4 0.9 1 23 603 626 603 626 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0068	0.49	11.4	3.7	1	23	312	335	312	335	0.94
2	11	0.01	0.73	10.9	0.4	1	23	342	364	342	364	0.98
3	11	0.5	36	5.6	0.9	1	23	368	391	368	391	0.88
4	11	0.28	20	6.4	1.8	1	23	398	420	398	420	0.82
5	11	6e-06	0.00044	21.0	1.2	2	23	425	447	424	447	0.97
6	11	9e-05	0.0065	17.4	1.8	1	23	453	475	453	475	0.97
7	11	0.00099	0.072	14.1	1.4	3	21	486	504	485	509	0.93
8	11	0.00011	0.0078	17.1	2.1	1	23	517	540	517	540	0.94
9	11	0.00095	0.069	14.1	0.7	1	23	545	568	545	568	0.97
10	11	1.1e-06	7.7e-05	23.4	2.7	3	23	577	597	576	597	0.99
11	11	9.7e-06	0.0007	20.4	0.9	1	23	603	626	603	626	0.95

Sequence Information

Coding Sequence: AtggaagaaaaagaagaaattcctttgaaattaatatgtatgGCGTGTCTCTGCGTTGGGCGTACGTTACGCAATATTACAGACGAGAAACTCAAACAATTTTACTTGGAAACTTTGAATGATATACAGcTCTGCCTGGCTAGAGTAGATTTGCGTGTGTGCTGGGAGTGTGAAGCTCTGTTCAAGAAAATTGTGCAATTCCGTGAACAAATGAAGGACTCATACAGGATCCTTCAAACTTATTCTAGTGAGAACCCTCATGTGTATTTACTATCAGATATAGTCCGATCACCTCGGCttggtaaaaaaacaatatcggTCTTATCTATATCACCAAAACTGAGAACTGCAAGAGGCAATGTTAAGGAAGAAGTCAAAATAGAATGGGATAAAGGAGatataaatgAAGATTCTAACGGTCTGCCACCGGACAGTGACAATGTGGATGCGCTGGATGTCGAGATTGAAACACTTGTCTCCAAAGCTAATGAGAATAAACAACGAAATGGATTGAAGAGTCTAGAAATATGCCCGCTATCGGGAGATGTTTCGCCGAGCTTACAGTGCACCGCCTCACCGATCGTAGTCGAAACTCAATTCCTTACTTACGATGTTAAAGTTGAAGACGAAGTCAGAGAATCTTCAATAAATGCTATCAAAACCTCCGATATACCTTTAGAAGTCGACGATGCTGATCCGTTCGAAGGTGAAATTGAAATGCTTGTTCCCAAAaccaaaaagaagaaaaataaaattaaaagcaaaattGATAAGACtaaaaaagttgttaaaaaacTACAGAATGGTATGAAGACatctaaaaaagttaaaaagctcGACGACCAAAAGATAATAACAGTTGAATTATCATACGAAGAGATGTTGGtagaaagagagagagaagTAGAGAGAGACAGTTATATAAACGCAGCCTACAAATGTGACACTTGTCTGATTCGGTTTAATTACAAACATTCTTATAAAGCACATATGACAGCGAAACATTCTccaAACGGAGGAAACTACGAATGTCCTATATGTAAAAGTAATATATCATCTGTCGATTCGTTCACAGCACACTATAAAAGACATTTGAGAAGATACGAGTGCAGTATCTGCCAGAAGCGCACTATGGACATCAAAGTGATGCAGCAACATTACTATTCGACGCACGAGATTTCGCTGAAGGAATACAAGTGTGATATTTGTGGGAAGATTTCTAATTCCATAGACACGCACAGATACCATAAAGACACGCACAAAGCTAGAGTGCAGTGCACCGAATGTGACAAAACTTTTACCCATAGAGCAGGACTATTGAACCATAGACTaactgTACACGAATTGAACAATGCTTTCCCTTGCACATTTTGTGACAAAGTGTTTCGGTGGAAGACGAGCCTTAAGCGGCATTTGGAGAAACATGATGTTAAGgaTAAGTGTTCGGCCGCGTATTGCGGTGTGTGTGGAATAACGTTTTCTTCGGTGTGTTCGTACCAGAGACATATGAGGAACAGTCTAAGGCACGTTTCACACGACCAACTCAGGTACATTTGCGACCACTGCAAGAGACGCTTCGCTGACAAAACTAAGTTAAGAGATCACATAGAAGAGAAGCATTTGCATAGGACTTACCAGTGCCACATTTGCTTGAAGCCTTCTAAAAACAGAGTGGGTTTAGACCAGCACATTAGAAACGTCCACAAAGGCAGGCCCAATAATAAGCTGTGTCACCACTGCGGCAAAGGATTTCCGACTAAGGTGCAGCTGGAATCTCACATTCGCACGCACACTGGTGAGAGACCATTTGCGTGCGATTACTGTCCCACCACATTCTCACAACTATCCAATCTGTACAAGCACAACCGACAGGTACACTCAAATGTAAAAGCTAAGCGGTACCCCCCTTGTAAGAAGAAGAAAGAGGACAAACCCCCCGACGCCCCCACAGAGGATCCGATAGACCCCTACAGACCCGTCGCTGTGCTACAATACTCCACAGATAGGGGGTTCGTTATGTGA
Protein Sequence: MEEKEEIPLKLICMACLCVGRTLRNITDEKLKQFYLETLNDIQLCLARVDLRVCWECEALFKKIVQFREQMKDSYRILQTYSSENPHVYLLSDIVRSPRLGKKTISVLSISPKLRTARGNVKEEVKIEWDKGDINEDSNGLPPDSDNVDALDVEIETLVSKANENKQRNGLKSLEICPLSGDVSPSLQCTASPIVVETQFLTYDVKVEDEVRESSINAIKTSDIPLEVDDADPFEGEIEMLVPKTKKKKNKIKSKIDKTKKVVKKLQNGMKTSKKVKKLDDQKIITVELSYEEMLVEREREVERDSYINAAYKCDTCLIRFNYKHSYKAHMTAKHSPNGGNYECPICKSNISSVDSFTAHYKRHLRRYECSICQKRTMDIKVMQQHYYSTHEISLKEYKCDICGKISNSIDTHRYHKDTHKARVQCTECDKTFTHRAGLLNHRLTVHELNNAFPCTFCDKVFRWKTSLKRHLEKHDVKDKCSAAYCGVCGITFSSVCSYQRHMRNSLRHVSHDQLRYICDHCKRRFADKTKLRDHIEEKHLHRTYQCHICLKPSKNRVGLDQHIRNVHKGRPNNKLCHHCGKGFPTKVQLESHIRTHTGERPFACDYCPTTFSQLSNLYKHNRQVHSNVKAKRYPPCKKKKEDKPPDAPTEDPIDPYRPVAVLQYSTDRGFVM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00035044;
90% Identity: iTF_00035044;
80% Identity: -