Cpin019412.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Catoptria pinella
Gene Symbol
-
Assembly
GCA_963556745.1
Location
OY750782.1:3808399-3812213[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00024 0.017 16.0 3.4 1 23 158 181 158 181 0.98
2 16 0.00024 0.018 16.0 1.8 1 23 189 212 189 212 0.96
3 16 0.025 1.8 9.7 0.5 2 23 225 247 225 247 0.97
4 16 0.00026 0.019 15.9 1.2 1 23 256 279 256 279 0.96
5 16 5e-05 0.0036 18.2 1.1 1 23 291 314 291 314 0.97
6 16 0.00014 0.01 16.8 0.7 2 23 341 363 340 363 0.97
7 16 0.00038 0.027 15.4 1.3 2 23 373 395 372 395 0.96
8 16 0.044 3.2 8.9 2.2 3 19 401 417 399 419 0.94
9 16 0.0026 0.19 12.8 1.4 2 21 425 444 424 447 0.94
10 16 0.0059 0.43 11.6 2.3 3 23 457 478 456 478 0.96
11 16 1.9e-05 0.0014 19.5 2.5 1 23 483 506 483 506 0.97
12 16 0.0021 0.15 13.0 0.4 2 23 518 540 517 540 0.95
13 16 0.0097 0.7 11.0 0.8 1 23 564 587 564 587 0.91
14 16 1.2 90 4.3 1.5 2 23 621 642 620 642 0.94
15 16 0.0036 0.26 12.3 0.1 1 23 708 730 708 730 0.97
16 16 0.19 14 6.9 2.0 1 23 736 759 736 759 0.96

Sequence Information

Coding Sequence
ATGGTGtcagtaaaacaaaaaatagatcTAGTTATCAAAAATGACAACGATAAAGACGAACTGGGAGTTCGTAAAGACCCAACTTCATTTTTACCTGAAGAACTTATGTCATATGAAATCAAagcaaaaaagaagaaaaagaaaaagaagaaactaGAAGACCCCTTCAAAGATATCAATGATAAAACGCCACTATCTACTCCGATCGAAACTTGTCTAGATATAGACCCAGAAGTCAATATAAAAGTGGAAAATATTGAAGTAGAGTTAGATTTTAAGgatTTTGCCGACAATGCTGGTCTTATGGTGGAGGGCCCAAACGACGACAGTCAAGAACCCGCCGTGAAAATCGAAGAGGAAAGCAAAGAAGCTGTTCTTTTAACTTTCGAGAGCATAATCAACAACCATTCAATTTTTGACCAGGACCAAGTCGACCCAGGCGAAGAACTCCTGGTTATACCAGAACGAAACTATGTCTGTCAAGTGTGTCATCTAGTCTTTAAAACTACAATAACTCTAAAAAACCACCAGAAAAGAAAACACAAGTCATTCAGATCTTTCAGACATATCTGCGATCACTGTGGCATGTCTTACGACGTGAAAAATAGTTTGATAGCCCATATTAAAAGAAAGCATGCGCCTGGAGTCAAACCAGACGACAACATAGAGAGGACGTGTGAAATCTGTGCTCTAGTCTTTAAAGGAATCAACAGGTTAAGAATGCATATGAGAAGAAAACATGGGTCATTTAAAGATACATTTAAGTTCGCGTGCTCAGATTGCGGTTTAACTTATGACAAGTTCAGTAGTTTGACAGTGCATCGAAAAAGAAAGCATTTGGGTAATCGGAAACCAGTTGTCAACCAATGGTTCAGTTGTCCATTTTGTCCAAAGGCATTTTCTAAGAGAGAAACTTATGCGAGGCATGTGCAGAGAAAGCACAGAGTATCTGAAGATGATGCAGCAAAAGCGAATGAACAGAATTTAGAAGGGTGCAGGAACGAACAAACTGGGGAGATCACTTGTAAAGAATGCCCTCTAGTGTTTTCGTCAATAAACTTCTTGAAACTTCACATGAGGAGAAAGCACAACGCTTTGGTTAACGACTTTAGGTTGAAATGTAAGATTTGCAATTTGTCCTATGATAAGATTGAGAGCCTCAAAAGGCATGTACGGAGGAAACATAATAACTACTCCCACTGTGAAGTGTGCGATAAGCATTTTGAAACGCGAGAAGCTTACATGAATCATTCTCATGCAAAAGTTGTTAAAGAGTGCCATATTTGTGGCTCAATTTTCGCATCCCAAGGCGGTTTAGCTAAGCACTTGAGGTGTACACACAAACTAGATTCTCCGAAAGTTGCTTTTTGCAATATTTGCAACAAAGGTTTCCACGATAAAAGGCAACTAAAACCGCATTTAATGAAGGTGCATTTAAAAGTTTCGTACACTTGCAAATATTGTAAGAAGGTTTTCAAAGCAAGAGAGAGTTATAGAAGACATATTTTGGTCAAGCATCCTGTTACGAAACACTACGTCACTCAAATGCAACAATGTGATAAATGTCCAGAAAAATTCCCCGACGAATTGGAATTGTGTCAGCATATAAATCTAGTCCATGCAGAGAAACTACCACACGACAATCTACCTTTCGTGAAGGTAAAAATAGAAGATGATGCAAATGGTTTTTATAAATGCACAAAATGTCCAGAAGTATATGCAAATTTCGAACAAATGAAGTTGCATTTCGAACAAAGTCACCATTTCGGTCCGGAAACCCAATGCCAGGTTTGCGGGGAGATTATGGCTGGTAACAAGTTAAAGAAGCATATCAAAGAAAAGCACTCTGTCGTATTACAGCAATGTAAATATTgcgaatttaaaactttaaacaaaGCAAGTATGACACAGCATGTTTTGAGACATAAGAATGCAACGACTATGCATTGTGATTTCCCTGGGTGTAAATACAAAAGTTATTATGACGGAGCGATGCAGAAACATAAGCTAAAACATAAGGAATTGGGTGTCAAATTGCAATGCGCGAAATGTCCTTTTCAATCAATGAATAAGTACATACTTAGATACCATGAAGAAGCTCATACGACTGGCAAAAAGAAATACCAATGCGATGAATGCGACTACGCGACGATCTTGCCAGCCAACTTAGTGCAGCATAAATATAAACATTCGACTGTGAAACGATTCAAATGTGAGGTTTGTCCTTTCGCTACTAAGTACAACACGTCTTTGAGGTTTCACGTGAAAAAGAAACACTGTGATTTACCAACTTTTAgttaa
Protein Sequence
MVSVKQKIDLVIKNDNDKDELGVRKDPTSFLPEELMSYEIKAKKKKKKKKKLEDPFKDINDKTPLSTPIETCLDIDPEVNIKVENIEVELDFKDFADNAGLMVEGPNDDSQEPAVKIEEESKEAVLLTFESIINNHSIFDQDQVDPGEELLVIPERNYVCQVCHLVFKTTITLKNHQKRKHKSFRSFRHICDHCGMSYDVKNSLIAHIKRKHAPGVKPDDNIERTCEICALVFKGINRLRMHMRRKHGSFKDTFKFACSDCGLTYDKFSSLTVHRKRKHLGNRKPVVNQWFSCPFCPKAFSKRETYARHVQRKHRVSEDDAAKANEQNLEGCRNEQTGEITCKECPLVFSSINFLKLHMRRKHNALVNDFRLKCKICNLSYDKIESLKRHVRRKHNNYSHCEVCDKHFETREAYMNHSHAKVVKECHICGSIFASQGGLAKHLRCTHKLDSPKVAFCNICNKGFHDKRQLKPHLMKVHLKVSYTCKYCKKVFKARESYRRHILVKHPVTKHYVTQMQQCDKCPEKFPDELELCQHINLVHAEKLPHDNLPFVKVKIEDDANGFYKCTKCPEVYANFEQMKLHFEQSHHFGPETQCQVCGEIMAGNKLKKHIKEKHSVVLQQCKYCEFKTLNKASMTQHVLRHKNATTMHCDFPGCKYKSYYDGAMQKHKLKHKELGVKLQCAKCPFQSMNKYILRYHEEAHTTGKKKYQCDECDYATILPANLVQHKYKHSTVKRFKCEVCPFATKYNTSLRFHVKKKHCDLPTFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00035048; iTF_00035983;
90% Identity
-
80% Identity
-