Cpin020899.1
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- -
- Assembly
- GCA_963556745.1
- Location
- OY750785.1:2587729-2594516[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.062 4.5 8.4 0.6 1 20 15 34 15 38 0.87 2 12 0.00023 0.017 16.1 1.2 1 21 45 65 45 66 0.96 3 12 5.6e-05 0.0041 18.0 1.0 1 23 170 192 170 192 0.97 4 12 1.3 97 4.2 0.1 3 23 216 237 214 237 0.94 5 12 0.00045 0.032 15.2 0.6 2 23 260 281 259 281 0.95 6 12 0.0031 0.23 12.5 1.8 2 23 286 307 285 307 0.96 7 12 0.00094 0.068 14.2 2.0 1 23 315 338 315 338 0.95 8 12 0.39 28 5.9 1.8 1 23 344 367 344 367 0.94 9 12 8.7e-06 0.00063 20.5 1.1 1 23 374 397 374 397 0.97 10 12 7.6e-05 0.0055 17.6 0.6 1 23 403 425 403 425 0.97 11 12 2.4e-07 1.7e-05 25.4 0.6 1 23 431 453 431 453 0.98 12 12 3.1e-06 0.00022 22.0 2.4 1 23 459 482 459 482 0.98
Sequence Information
- Coding Sequence
- ATGGATGATCATATGTCGCGTGCGCACACTCGCAAACCAATTTACAACTGCAACGAGTGTAATGAAGCCTTCTTCTCTCAAATCTTGAGGTTCAAACACAAAGTCGAAATCCATGGGGATTCCACTAAAACATATGTGTGTGAACAATGCGATAAAGTTTATGACAAGAAAAAAAGTTTACATGCACACAAAAGGAATGTTCCGCCTCTAGATATTTCAGACATAAAAGGTGatataaaaaaggaaacagATAGTCTTGATAGAAAACCAGTCAAACGGAGGTTAGTTAAGAAGAAAATTAACGAAACGGGGCGAGCGAAGAAGGAGATGTTGACTAAAATGAAGAAGATGAGAGAAAAACTGAGAAGCATGCAGAGCAGTGATACTGaTCAACCCGTGCCAGCTACTCCCGGCAAATGGAAGTCGGCAAACACGAAATCATTCCACAACCTAATCACTCTAGTTGAGAACTCTTTCGTCTGTCCTTTTGTCACAACCTTCAGCAATTTCTTTTGCGTATACTGCCGAGAGATGTTCACAGACCCTGACAAACTACGGGAGCACACACAAACGCACGACCCTAGAATCTACCAAGACACTGTCACCTACAAAAGGGACTTGCAAATCGACATAGCACGAATCGATTGTCGATTGTGTCCTGAACCAATCGATAATCTAGAAACCTTCTATAAGCACATCACTAGCATCCACAACAAACACTTATACCCGAACATAAAAAACGAGTTCCTTAAATTCCATCTGCGTCTCGGCACTTTATCTTGCTTGGAATGCGGAGGCAGTTACACTAATTTCCACGCTTTAAAAAGGCATATGGCGGAACATTTCGGTACTTGCATCTGTGATATATGCGGGGGGCATTTCTTCGATGAAAACAAGCTCATTATACACCAAAGAAGTCATCAAGAGAAGGCTAACAACCTCTTCCCTTGTAAAGattgtggtaaattatttaaatcgaaACATGGGATGTATTACCATGTATCGAGGGCTCATAGCGCGGAACCGACGTTTCACTGTTATAAATGCGACGAGGTTTTATTCTCACAAACGTTAAGGTACAGACACATGATCGAAGTACACGGCGAGACTGCCAGGAAATTCCCGTGTGACAATTGCAATAAAGTCTATGACACCAAGAAATCTTTGAGAGAACACGTACGGAAAAACCActtaaaagttttgaaacacGAGTGTAGTGTATGCGAGAGAAAATTCTACCTGCCATCTGCTCTGAAGGACCATATGGCGTCGCATACTGGCGAGAGGAACTTCCGGTGCGAGTATTGCGGGAAAAGCTACCCTAGGTTGAGGGCGTTAAGGGTCCATATGCAGTCACACGAGACGGAGAAGAGATATAAGTGCTCTTTATGTTCCGCGTCGTATACTCAAAGTAATAACCTGAAAAATCACATGAAAACGAAACATCTGACTAGTGATTACCTTCCTGATTTGCAGTGA
- Protein Sequence
- MDDHMSRAHTRKPIYNCNECNEAFFSQILRFKHKVEIHGDSTKTYVCEQCDKVYDKKKSLHAHKRNVPPLDISDIKGDIKKETDSLDRKPVKRRLVKKKINETGRAKKEMLTKMKKMREKLRSMQSSDTDQPVPATPGKWKSANTKSFHNLITLVENSFVCPFVTTFSNFFCVYCREMFTDPDKLREHTQTHDPRIYQDTVTYKRDLQIDIARIDCRLCPEPIDNLETFYKHITSIHNKHLYPNIKNEFLKFHLRLGTLSCLECGGSYTNFHALKRHMAEHFGTCICDICGGHFFDENKLIIHQRSHQEKANNLFPCKDCGKLFKSKHGMYYHVSRAHSAEPTFHCYKCDEVLFSQTLRYRHMIEVHGETARKFPCDNCNKVYDTKKSLREHVRKNHLKVLKHECSVCERKFYLPSALKDHMASHTGERNFRCEYCGKSYPRLRALRVHMQSHETEKRYKCSLCSASYTQSNNLKNHMKTKHLTSDYLPDLQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01334210;
- 90% Identity
- iTF_00035972;
- 80% Identity
- -