Cpin015530.1
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- ZFY
- Assembly
- GCA_963556745.1
- Location
- OY750776.1:11934538-11938215[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.9 4.2e+02 2.2 4.7 2 23 182 204 181 204 0.94 2 13 0.15 11 7.2 0.7 6 23 294 311 294 312 0.95 3 13 0.078 5.6 8.1 0.3 3 23 324 345 323 345 0.95 4 13 3.4e-07 2.5e-05 25.0 1.1 2 23 373 394 373 394 0.97 5 13 1.3e-05 0.00093 20.0 1.3 1 23 401 424 401 424 0.96 6 13 0.0032 0.23 12.5 0.1 1 23 430 452 430 452 0.98 7 13 0.031 2.2 9.4 2.7 1 23 607 629 607 629 0.96 8 13 0.00042 0.03 15.3 1.4 2 23 636 658 635 658 0.89 9 13 8.9e-06 0.00064 20.5 1.3 1 23 664 686 664 686 0.98 10 13 4.1e-06 0.0003 21.6 0.1 1 23 692 714 692 714 0.98 11 13 7.5e-05 0.0054 17.6 0.4 1 23 720 742 720 742 0.98 12 13 3.2e-05 0.0023 18.8 1.4 1 23 748 770 748 770 0.96 13 13 0.00055 0.04 14.9 1.7 1 23 776 799 776 799 0.95
Sequence Information
- Coding Sequence
- ATGAATAGTGAAACTGAACAAATATTTATAGTGAATACATCTAGTTCGCAACCATCTGCTTCAGTGCTCAAAATAGACCCAACTTCAGCTTCAACGGCGACAGATATTGAAGACTTCTCAACAGTATGTAGAACTTGCGCCACAGTCACAGAGTTCGTGATCCCAATTTTTGATGGAGAAGGTGTGCAGAACAATCTGGCTGAGAAAATTGCAAAGCATTTACCAATCCAGGTATCAGAACAAGATGTGTTGCCACGCGTTGTGTGCTACCAATGCGCAAGCACGCTGCTGGCGTGGCATGAGCTGGTGCAGTGCTGCGTACAGGCTGATGCTGCATTACGGGCGAGGCTGGCCAACGGACTCGTCAACAGGCCCGACAACAATGTGgAATCCAAACCAGATCAAAACAAAGAGATTATACCGAATTCTTCTGGAGAACAACAACAAAAATCACACACTGATCTTAGTAATATGTTAAAAGCAGTGTTGGTGGATTACTTACCTACAGTATCCTCTGCTAGCGATGAGCTTGATGTGGAATGCGTGTGCCACAAGTGCCCCTTTACGATGACCAGTATAAGAGATTTAACAGACCATTTCACCACAAAGCACCCCGCTGATGCTGGTGGTTATGAAACACTACAAAGATTTATCAAAGATCATATTACATTTGAAGAAGTGCTTATTTCAGATGATTCAGATAGAGATATTGAATCTAAAGACGATTTCGACGAAATCAAATATCGCCCGCAAAAAACTGCTACAACCTTACAAAACTTCTTTTGTCCGTTTTGTGAAAGTATATTTTCATCCACGATAAGACTCATCTGTCATCTTAACCAACATATTGAAGTCTCCTTAGATAAGGAAGTAACTTGCTGTGATGAAACTTATAAGGACAAGAAAATGTTTGTACAACATCTACAAGAGCATCATGTCAATCGCGTCATAAACGAGGGATCAAACATCTGTAAAAGTTGTGGTTTTAAAGCGAATAATTTGTATGAACTTCAATCTCACATATTCATGATCCATGAGAACAATCTATCATCTAGCACGACAACCTTAAAATTGAAGAAAGACCCGAgcaacaaaaatcaaaaatacattCCCGCCGTGTGCCCAGAGTGCAATAAAACCTTCTcaaataaatacaacatgtttaTCCACATGAAAAGTCACAGCAGagaaacaaaaaagtatttctgtGACAAATGTGACAAGTTTTACAGCAGTCCATGGAACTTGAAGAACCACAAAAAAGTAGTGCATGATGGAATACTGAATTATCCATGCACTTTTTGCGGCGAAGCGTTCCCCGTCCGCCAAGCGCGCGACACGCACATGCGCATACACTCCGGAGACACTCCTTACTCGTGGAAAACCTGCCCGGTCAAATTGGAACCCAGTGCCTGGGATGGAGGGACGACTGATCTAAATCAATATACGTTTTGCAAATACGTCAATGAAGTAGATGATAAGTTCGACGTCGACAGCAGCCTCGGGTCGGCCAACGAAGACGACGAACCGCTCTCGAATTTAGCTCACAAAAAATCGACAGATCTTTACCACAATTTCTATAGggctttaattaactttaaaaatcacTACGTAAAAGAACATAATTCCGACGGAACGAGTTCAGAAACATCCGATTCCGCCGACTCGGAAATATTGGAAAACGACTCGGGCAAAGGCGTCGACAACGTGGACAGCTACGACGACCTCTCGCACTGCAACATGAGGAAGGACAGAATGGATGAGGAGACACGGCTCGAGCTAAACAGAGTGCAAACGAAAATAAACGGAAAAATCTTTTACACGTGTCCCACGTGCGGGAAGAACTTGAGTTCGTCGCACACGTACGTGTTCCATAAACGGATTCACACGGGCGAGCGGCCGTGCGTGTGCCACGTGTGCGGGAAGCAGTTCAGGGCGCCCAACGGGCTGCAGCGACATCTCGTCGAGACGCACGAGCGCGCGCGACGCTACTCCTGCCGGCTCTGTCTCAAGAGTTTCGCAAACTCCCAAAATTTGAAGCAGCATCTGCGGATCCACACGGGGGAGAGACCTTACGTGTGCGCCGATTGCGGGAAACGGTTCGCTCAAAGCGGCACGTTGTACGTGCACGCCAAAACGCACAGCGAGCAGTTGCCTTACGAATGTGCGGAGTGCGGGGCTAAGTTCCGGTTGCGGTCGGGGTTGACGCGGCACAAGTTGAGGCATACCGGAGTGCGGGCGCACGCGTGTGAAGTGTGCGGGCGCACGTTCAGGCTGCGGCACGAGCTGACGGCGCACGTGCGCGCGCACGACGGCGCCAGGCCGCACGCGTGCCTCACGTGCGGGGCCGCATTCCGCCAGCGCCGCGCGCTCCGCCACCACGCCAGGAGGGCGCACGGCCTCCACGCCCTGCCTCCAGATATAGCGCAGCCCTCACTGCCCACCTACGCACAAGTCGACAACTATTAA
- Protein Sequence
- MNSETEQIFIVNTSSSQPSASVLKIDPTSASTATDIEDFSTVCRTCATVTEFVIPIFDGEGVQNNLAEKIAKHLPIQVSEQDVLPRVVCYQCASTLLAWHELVQCCVQADAALRARLANGLVNRPDNNVESKPDQNKEIIPNSSGEQQQKSHTDLSNMLKAVLVDYLPTVSSASDELDVECVCHKCPFTMTSIRDLTDHFTTKHPADAGGYETLQRFIKDHITFEEVLISDDSDRDIESKDDFDEIKYRPQKTATTLQNFFCPFCESIFSSTIRLICHLNQHIEVSLDKEVTCCDETYKDKKMFVQHLQEHHVNRVINEGSNICKSCGFKANNLYELQSHIFMIHENNLSSSTTTLKLKKDPSNKNQKYIPAVCPECNKTFSNKYNMFIHMKSHSRETKKYFCDKCDKFYSSPWNLKNHKKVVHDGILNYPCTFCGEAFPVRQARDTHMRIHSGDTPYSWKTCPVKLEPSAWDGGTTDLNQYTFCKYVNEVDDKFDVDSSLGSANEDDEPLSNLAHKKSTDLYHNFYRALINFKNHYVKEHNSDGTSSETSDSADSEILENDSGKGVDNVDSYDDLSHCNMRKDRMDEETRLELNRVQTKINGKIFYTCPTCGKNLSSSHTYVFHKRIHTGERPCVCHVCGKQFRAPNGLQRHLVETHERARRYSCRLCLKSFANSQNLKQHLRIHTGERPYVCADCGKRFAQSGTLYVHAKTHSEQLPYECAECGAKFRLRSGLTRHKLRHTGVRAHACEVCGRTFRLRHELTAHVRAHDGARPHACLTCGAAFRQRRALRHHARRAHGLHALPPDIAQPSLPTYAQVDNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00035012;
- 80% Identity
- -