Basic Information

Insect: Catoptria pinella
Gene Symbol: -
Assembly: GCA_963556745.1
Location: OY750785.1:2815405-2817207[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.031 2.2 9.4 1.8 1 23 25 47 25 47 0.96

2 16 0.01 0.74 10.9 0.1 3 23 77 98 75 98 0.95

3 16 0.00042 0.031 15.2 0.3 2 23 119 141 118 141 0.96

4 16 0.002 0.15 13.1 2.3 2 23 147 169 146 169 0.94

5 16 0.00031 0.022 15.7 1.6 1 23 174 197 174 197 0.96

6 16 0.27 19 6.4 0.1 2 23 200 222 199 222 0.93

7 16 0.0049 0.36 11.9 1.5 2 22 229 249 228 249 0.95

8 16 0.0038 0.27 12.2 0.6 1 23 306 329 306 329 0.90

9 16 0.18 13 7.0 0.1 3 23 358 379 356 379 0.92

10 16 0.018 1.3 10.1 0.2 2 23 402 425 401 425 0.95

11 16 0.00032 0.023 15.6 0.4 3 20 432 449 430 453 0.90

12 16 0.0088 0.63 11.1 0.4 1 23 458 481 458 481 0.97

13 16 0.00026 0.019 15.9 0.2 2 23 487 509 487 509 0.94

14 16 9.3e-05 0.0067 17.3 4.7 1 23 513 536 513 536 0.97

15 16 0.00032 0.023 15.6 0.7 2 23 543 564 542 564 0.96

16 16 0.0028 0.2 12.7 2.6 1 23 570 592 570 592 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.031	2.2	9.4	1.8	1	23	25	47	25	47	0.96
2	16	0.01	0.74	10.9	0.1	3	23	77	98	75	98	0.95
3	16	0.00042	0.031	15.2	0.3	2	23	119	141	118	141	0.96
4	16	0.002	0.15	13.1	2.3	2	23	147	169	146	169	0.94
5	16	0.00031	0.022	15.7	1.6	1	23	174	197	174	197	0.96
6	16	0.27	19	6.4	0.1	2	23	200	222	199	222	0.93
7	16	0.0049	0.36	11.9	1.5	2	22	229	249	228	249	0.95
8	16	0.0038	0.27	12.2	0.6	1	23	306	329	306	329	0.90
9	16	0.18	13	7.0	0.1	3	23	358	379	356	379	0.92
10	16	0.018	1.3	10.1	0.2	2	23	402	425	401	425	0.95
11	16	0.00032	0.023	15.6	0.4	3	20	432	449	430	453	0.90
12	16	0.0088	0.63	11.1	0.4	1	23	458	481	458	481	0.97
13	16	0.00026	0.019	15.9	0.2	2	23	487	509	487	509	0.94
14	16	9.3e-05	0.0067	17.3	4.7	1	23	513	536	513	536	0.97
15	16	0.00032	0.023	15.6	0.7	2	23	543	564	542	564	0.96
16	16	0.0028	0.2	12.7	2.6	1	23	570	592	570	592	0.97

Sequence Information

Coding Sequence: ATGCGCAGACGAAGAAACCTCCAATTGTTGTTCAACAATACAACTATAATACCTTTTAAGTGGCGAGGAAAGTACCTGTGTTTTTACTGTAGCAAAGACGTCCAAGAATATTCTGATTTAAGAAAACACACCAAGTCACACGGCGAATGTTCGATCACAGATCATTCTTTAATGGTTCTCAGAGGAGGTCGGAACATGGAGATTAAAATAGATGTATCTGAAATAGCGTGCGAGATTTGCCACGAGCCTTTCCCTTCTTTTGACGAAGTCATAAACCATCTGAGCGTAAAACATAAGTTAGAGTACGAACGAGACGTCGAAATGGCTACAGAGCAATTCCGTCTCTCGGATTTGTCGTGCTTACAGTGCGGGGAGAAGTTTTCGTATTTCGGGTATCTCGTATCTCATATCAACACAAGTCACCCGAAGAATTGTCTCGTCTGCGAGAAATGCAACCAGAAATTCAATAAGAAGCGGGATTTGTTCTCTCACGAAAAGAATTACCATAgagaaggaggttatcaatgCGAGTATTGTCCGCAAAACTTTAGCTCTCTTAGCATATTACGGAAACATAGAAACAATAAGCATTTCTCCAGGTGTAATATATGCCAGTTGAAATTGCCAACTGCTGCTTTGAAACAAAAACACATAGAGTTAGAACACCCTGATGATGGATCGCTTCAATGCGGTACTTGTTTCAAAGAATTCCACACGAAGCAAGGTCTTAAAATGCACATTCGGAAATGTAAGGGAGAAGACGATGCTTTTGAAATGGCGATTAAAAGAGAAGGAGACATTGAAGATGATTATGAAGAACCTATTAAAAGACCTagtgttaaacaaataagggaAAACATCGTCATAGTGATTAATATGTCAACAGCCATACCTTTCAATTTCTATAAGAATAagttcaattgtttttattgctcTAAGGACTTCGCAGATTCAGATTCTATGAGAGAACATACAGTGCTGGAACACCCTGTGTGTGACGTTGAGCAGAAATGTATCCGAAAGTGTAGAGAATCCGTAGCGTGCGTCAAAATTGACGTATCCACCCTCGCTTGTAAAATTTGCTTCGAATCTATGAACGATTTGGATAATTTGTTAGACCACTTGATTTTAAAACACGAAGCCAATTATGATAAGTCCATCACCACATGTTTACAACCATACAGATTGATCAAAGACAACATGGTTTGCCCCAATTGTCCAGGGGAAGTGTTTAGGTTCTTTGGGACTTTACTGAAACATATGAATAAGAaacacacaaataataatattatttgcgtCTATTGCGGCGAGTCTTTTAGGCGAGATCAAAATTTAAGGGTGCACATCTGGAGGCATCATAGAGACGGGAGATTTAAATGTAGTATCTGTGATGCGGAGTGTAGCATTCCATCGAGGTTGTATATGCATATGGCGAAAGCCCACGGTGTTAAAGCAGCGAAGTGCCCTAAATGCCCGGAGAGTTTTGCTACTCAATATTTAAGACAGAAACATCTGATAGAGGCTCATGATTCTGGCCACAAGTGTTCGTATTGCGGCAAACTCTTCACGAGAAACTCATTTATGCGGGATCATGTGAGGAGGACTCATTTGAAAGAAAAGAACGTTGAGTGTTCGATATGCACTATGAAATTCTTTAACAATATACTTTTGAGACGGCATATGGTTAAACATAGTGGAGAAAAGAACTTCCACTGTGATATGTGTGGGGAGCGGTTCTTTTGGAAGAAGAGTTTACAGACTCACATGGCTAGGCATAATAGAGACCCATATAATATGCATTAA
Protein Sequence: MRRRRNLQLLFNNTTIIPFKWRGKYLCFYCSKDVQEYSDLRKHTKSHGECSITDHSLMVLRGGRNMEIKIDVSEIACEICHEPFPSFDEVINHLSVKHKLEYERDVEMATEQFRLSDLSCLQCGEKFSYFGYLVSHINTSHPKNCLVCEKCNQKFNKKRDLFSHEKNYHREGGYQCEYCPQNFSSLSILRKHRNNKHFSRCNICQLKLPTAALKQKHIELEHPDDGSLQCGTCFKEFHTKQGLKMHIRKCKGEDDAFEMAIKREGDIEDDYEEPIKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFADSDSMREHTVLEHPVCDVEQKCIRKCRESVACVKIDVSTLACKICFESMNDLDNLLDHLILKHEANYDKSITTCLQPYRLIKDNMVCPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGESFRRDQNLRVHIWRHHRDGRFKCSICDAECSIPSRLYMHMAKAHGVKAAKCPKCPESFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHVRRTHLKEKNVECSICTMKFFNNILLRRHMVKHSGEKNFHCDMCGERFFWKKSLQTHMARHNRDPYNMH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01198043;
90% Identity: iTF_00382953;
80% Identity: -