Cpin003732.1
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- L
- Assembly
- GCA_963556745.1
- Location
- OY750761.1:8218641-8239980[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.9e-07 6.4e-05 23.7 2.6 1 23 87 109 87 109 0.99 2 17 0.67 49 5.2 5.8 1 23 115 137 115 137 0.97 3 17 6.8e-07 4.9e-05 24.0 2.7 1 23 143 165 143 165 0.99 4 17 2.8e-05 0.002 18.9 0.1 1 23 171 193 171 193 0.98 5 17 0.00068 0.049 14.6 0.0 2 23 209 231 208 231 0.95 6 17 6.4 4.6e+02 2.1 0.1 9 23 262 277 258 277 0.93 7 17 0.32 23 6.2 0.1 3 23 329 349 328 349 0.97 8 17 0.7 51 5.1 0.0 3 20 364 381 363 382 0.86 9 17 0.0002 0.014 16.3 0.6 1 23 392 415 392 415 0.94 10 17 0.035 2.5 9.2 0.1 1 23 420 443 420 443 0.92 11 17 0.00047 0.034 15.1 0.2 1 23 502 526 502 527 0.95 12 17 0.00021 0.015 16.2 0.1 2 23 584 605 583 605 0.96 13 17 0.062 4.5 8.4 0.0 1 23 613 635 613 635 0.97 14 17 1.8 1.3e+02 3.8 0.7 2 23 643 664 642 665 0.93 15 17 0.94 68 4.7 0.3 1 23 739 761 739 761 0.94 16 17 0.0037 0.27 12.3 0.1 1 20 769 788 769 791 0.95 17 17 0.14 10 7.3 0.4 1 23 798 820 798 820 0.94
Sequence Information
- Coding Sequence
- ATGATCATGCTGTTTAAAGGGAACAGCAGCAGGCTGGAGCACCTCATCGAGAAAATACAGGCCAATAAAGAAAATCACGACGTCATTGCGGACGATATAAAAGAGGCCCTGGGTAGTGTGGGCAGCACGGCGGGCAGCTCGTGGCCGTCCTCGACGCCGGAGCCGTCACCGTCGCCGGCGTCCACGCCGACCTCCGCCGACGCCGCAGACGCTGACGCCGACCCGCCGTTTACGCTCGGCGCCACTGAGCACACGCCCTACCAGTGCCAGTTCTGCGACAAGGCCTTCTCAAGGCTTTCTTATCTGAAGAAACATGAACAGACACATTCGGACCAAATGCCGTTCCGGTGCGAGTTCTGTTCCCGATTGTTCAAGCACAAGAGGTCACGGGACCGCCACGTGAAACTGCACACAGGGGACCGCAAGTACCGCTGTGCACACTGCCCAGCGGCTTTTTCCAGAAGTGATCACTTGAAGATCCATATGAAGACGCACGACAACCAGAAGCCGTTCCAATGCACGGTGTGCAATCGCGGGTACAACACGGCAGCGGCGTTGACGTCACACATGCAGGGCCACAAACGGGACCGAGAGGGCCGCGAGCCAGACCGCCGGCGGGTGCTGCGCTGCTTGCGCTGCGGCGATGCTTTTAAGCGACCTGACTTACTACAGGCGCATATGGCAAGTGCACATGGAATAGACGCGGCTGCTGTAACACCACCACGGCGAGTTGCGTCGCAACCTCCGCCAACACTGCTCGCCTGCATCTATTGCACTCGCGACACTTTCACCAGTATGGAACAGCTGCAGCTCCACGTTCGTGCAGCACATTCAGCATTGCTCAACGGAGAGACGCCCATGCAAGTCGATCAGCCGACGCCTACCGACCTTAGTAGACGAGCAACTGACGAAGCACCCGCAGCAAAGCGACCCCGTTCTGGCTCTGGAACGCCTCAAACGGCCCTGTCCCCTAGCACACTTCTATGCAATCAGTGTGACGCAGCACTCCCAGACTTTGAAGCATTCCGAAACCACTTAAAAGGTCACCTTGAAGAGGGTGGAGAGTTAGGAAGGTCAAGTCCTGCTCCTTGTCTACATTGTGGTGCTACATTTGCTGATGCAGCAGCGTCCGAACGACACCTTGCCGCCTACTATCTGGCAGTGTCCTGCGAATACACCTGCCACAGCTGCTCACGAAGCTTTGCTGCGCCAGACGACCTACAAAAGCATCTTCTAGATTTACATGCTCATCATCTATATAGATGTTCCTTGTGCAAGGAAATCTTCGACTCAAAAGTAGCGATTCAGGTGCACTTTGCCGTAGCCCACAGCGGGGAAAACAAAGTATGGATGTGTCGATCATGCGGCGGCAGCGCGGGCCCGCTGCGGTCGGAGGCGGAGGGCACAGCACACGTGCGCGCGCGGCACgctgcggcggcggcgcgtTGTGCGTGCGGCGCCGTACTAGGAGGTGGTGGCCGGCTACCACGCGCACATCGTGCTTACCGCTGTCCAGCGCCTGCGTGCACTGAGACCTTCGCAGTGCAGTATCTGCTTGAGAGACACATGCAAGCGCACCACACGTCTCCTCACCAGGCGATAAACGGTGACATGTCAAGAGTGAAGCGACTAGATAACAACAACGGCACAGAAGGAGCTGACGGGAATTGCTCGCCGTGCACAACTGGCTCGGATGGGAACGGCCCCGTGGTGGAGGAACGACGCCGCAAAAACGGTGCAGTCGCGTTGCAATGCGCGTACTGCGGTGAGCGCACGCGCAGCCGCGCTGAACTTGAAGCTCACACTCGCGCGCACTCCGGCGCCGCTGCTGCAAGGCATAAGTGCCTCATATGCGATGAAGTTTTGCCCTCAGCGGCTGTACTTGCTGAGCACAAGCTGACGCATTGCAAGgTCGTTGCTGGTGACACGTGTGCTCGATGCCGTGCCCGCCTACCGTCCGAAGAATCCTTCCTAACTCACATGGCACGACATCACCCCACTCTGCCGGCTCCCTGCGTCGTTTGCCGTCAAACACTAGCTTCGGAGGCGGAAGCGCGTCTCCACGCTCGTTTCCACCTACGCCCCGCAGAAGACGAGCAAAGATGCGCGATATGTTTACGGGCACTCACGGAGAGTGAGGCGGGGGAGGGAGCTCGTGCTTGTTCCTCATGTTACGCGCGTCATGCGGCGCCCCGTCCCCCTCCCCCCGCGGACCACGACTGTCGCCTCTGCCGACGCGCCCTCGGATCTCCCACACGTCTCCAAGCACATCTCATAGAACACACATTCGCCGGCATAAGCGCATTCACCTGCTATCTCTGCTCAGCCGTTTTCACAAGCGCAGCTGGTCTACAACGCCATCTTCCCGAACACGCTTCGGCGCCAAAACCCTTCGATTGTGGACGGTGTGGTTTGAAATTCTTTTTCCGAGCAGAGCTCGATAATCATGCGTTCGTGCATCTAGAAGAAGCGGAAATAGCTCAGAGAGCGTTTTATGAGGCTTACGCTAGAGGAGCCGCTTCTGCTTGGGCCGCGCTAGCTCCACCTGATTCCGTGCCTCAGGCCCCGTTGCCTACGCCAGCGCCACCCTTGGCCGCAGTCAAACAGGAGACAGAGATAAAAGAAGAGCGAAATACTGACGAGTACATTGAAGTCTCATCTCCTCCACCGGCCCCACCCCCGCAACCTCCGAACCCTTCACCCCCTCTCGTGGTGAAACAGGAAAAGCCCGACGAAGACTGA
- Protein Sequence
- MIMLFKGNSSRLEHLIEKIQANKENHDVIADDIKEALGSVGSTAGSSWPSSTPEPSPSPASTPTSADAADADADPPFTLGATEHTPYQCQFCDKAFSRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCPAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDREGREPDRRRVLRCLRCGDAFKRPDLLQAHMASAHGIDAAAVTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGETPMQVDQPTPTDLSRRATDEAPAAKRPRSGSGTPQTALSPSTLLCNQCDAALPDFEAFRNHLKGHLEEGGELGRSSPAPCLHCGATFADAAASERHLAAYYLAVSCEYTCHSCSRSFAAPDDLQKHLLDLHAHHLYRCSLCKEIFDSKVAIQVHFAVAHSGENKVWMCRSCGGSAGPLRSEAEGTAHVRARHAAAAARCACGAVLGGGGRLPRAHRAYRCPAPACTETFAVQYLLERHMQAHHTSPHQAINGDMSRVKRLDNNNGTEGADGNCSPCTTGSDGNGPVVEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGAAAARHKCLICDEVLPSAAVLAEHKLTHCKVVAGDTCARCRARLPSEESFLTHMARHHPTLPAPCVVCRQTLASEAEARLHARFHLRPAEDEQRCAICLRALTESEAGEGARACSSCYARHAAPRPPPPADHDCRLCRRALGSPTRLQAHLIEHTFAGISAFTCYLCSAVFTSAAGLQRHLPEHASAPKPFDCGRCGLKFFFRAELDNHAFVHLEEAEIAQRAFYEAYARGAASAWAALAPPDSVPQAPLPTPAPPLAAVKQETEIKEERNTDEYIEVSSPPPAPPPQPPNPSPPLVVKQEKPDED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01437318;
- 90% Identity
- iTF_00448363;
- 80% Identity
- -