Cpin017665.2
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- -
- Assembly
- GCA_963556745.1
- Location
- OY750779.1:7184811-7198345[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.6e-05 0.004 18.0 7.9 1 23 195 217 195 217 0.98 2 13 2.5e-06 0.00018 22.3 0.2 3 23 231 251 230 251 0.98 3 13 4.9e-05 0.0035 18.2 2.2 2 23 260 281 260 281 0.98 4 13 0.00033 0.024 15.6 2.1 1 23 287 309 287 309 0.98 5 13 0.0001 0.0075 17.2 3.1 1 23 315 337 315 337 0.97 6 13 1.7e-05 0.0013 19.6 8.4 2 23 344 365 343 365 0.97 7 13 1.9e-05 0.0014 19.5 0.8 1 23 371 393 371 393 0.98 8 13 5.7e-06 0.00041 21.1 1.1 1 23 399 421 399 421 0.98 9 13 0.00026 0.019 15.9 0.9 1 23 427 449 427 449 0.98 10 13 0.0031 0.22 12.5 2.0 1 23 455 477 455 477 0.96 11 13 0.00027 0.02 15.8 0.4 3 23 485 505 483 505 0.97 12 13 7.1e-06 0.00051 20.8 5.0 1 23 511 533 511 533 0.99 13 13 0.00075 0.054 14.5 1.8 1 23 595 618 595 618 0.96
Sequence Information
- Coding Sequence
- ATGGCTGCTGTGAATAAAACGCAACCTTTAAAATTCGATCTAATATGTCGGGCGTGCTTGCAAATAAAAAAGGACATGAGACCATTGTTCGAACAACTAACAGCAACTATGTTAATGGGTATATCAAAAGTGCAGGTATCGGTTGGCGACGGGCTGCCTTCCCAGCTGTGCCTGCAATGCGTGCACCAGATATCCCGCTGCCACGCCTTCAAAGAGCTGGTAGAGCGCAATGACGCCACACTACGGGAGCAGGTCAAGCGCTTGGCGGAGGAAGCTCTTAAGCGGGAGAGAGAGGAGAAGGAGATGCTGGCCCTGCAGAACTGCTCGGAGCCGTACATGCAGTACATGGAGCTGCCGCTGGCGACCAACCCCAGCCAAATTATCGACAACTTCTTCAGCGAACCGACGCAGGCGCCGGCGCCTGTCCAACAACAGCAGAAAGATTCGTTTGACagcgaaaaaatatttgttGTAAACGAACCGCCCACCGAAACCAAAGAAGATGATGCCCTCAACTCTGACGAAGAGAGCTACCTCCAAATGGTGGTGTTCCAAGCGACTTCATCGGTCTCCCCTGGAAGACACGTCTGCAACCTCTGCCATAAGGAGTTCAAGCACTCCAGGTGGCTAAAACAACACATGAGGTCACATACTAACTGGATTAAAGCCAACTGCAAGAAACCACCCATGTGTCCGATATGCGAGAGGACTTTTAAGGGTCCAGGCATGCTTAAGATGCATATGCGCACACACGAGCAGCGGCCCCCCAAGCAGCCGACCTGCTCCGTCTGCCAGCGCACATTCGCCACCAAGACACTGCTCTACAGGCACAGACAAACACACTTCGAGCAGAAAACGCACCAGTGCACGGTGTGCGAAAAGCGTTTCTTCAGCGGATACGCGCTGCGCTCTCACATGGCGCGCCATCGCGGCGAGCGACCGCACACATGCTCGCTGTGCAGCAAAAGCTTCTACAACCCTACTGACTTGAAGGTCCACTTCCGCCTCCATACCGGAGAGAAGCCGCTCAAATGTTCCGAGTGCAACAAAACATTCCGGCGCCACTCGACGCTGTGCCAGCACATGAAGAAGCACCGCGGCATCAGGAACCACGTGTGCAACGTCTGCAATAAGGGATTCTACGAGATCTCCAAGCTTAATGCCCATATGAGGGTTCACACAGGCGAGCGTCCTTTCGAGTGCTCATCTTGCGACCGCAAGTTCGCGCAGCAGTCCGCCTTGATCTACCACCGTCGCACGCACACCGGGGAGAAGCCTTACAGCTGCAAGGTGTGCAACGCTCGCTTCACCACCTCGTCGGCTAGGAACAACCACCTCGTCACACACACTGGAAACAAGAGGTTCATCTGTCCCGTGTGCTTCAAAGGATGCACTTCGCGAACAGAGCTACGCGTGCATTCTAGCAAACATACTGGGGAGAAACTGTTCGGGTGCGAACTTTGCTCGCAGCGGTTCAGTTCCGCGTCTTATTTGGCTGTTCATAGGAGATACCATACCGGAGAGAGGAAGTACCAATGTAACGTCTGCCAGAAATGTTTCATGGAATCAAACTCTCTCAAAAAACACATGAAAACACACGAATCCAAAAACGAAATAGAATCGTCAGCCAGCTCTGAAAATAGTTCAGAAACGCAAATGAACGACAATTCTAAAGCAAACGAAGTCGTTGAAACTCCACCTTCTATAGAACAAAATGAAACTCAGGTTCAAAGTCAGGATGCTAGTGTACATGAAGAAAACGTAGCGCAAGTACATAAGAAGTATAGGTGCGGTATATGCGTGAAGACTTACATGTACCTGCATAGCTTGAAGAAGCATATTATGCAAGTCCACGGGCCGacacaacaacaacaacaacaacagcagcagcaacaacaacaacaacagcagcagcagcaacaacaacaacaacaacaacaacaacaacagcaacaacaacaacaacagcagcagcagcagcagcaacatcaacaacaacaacaacaaatacAACAATCTCAACAACAACAACATCAAGCTGTCGCAGTGCAACAACAGCAGCTGCAGCAACAAGCAGTGCTGCAAGTTGGCAACGTGCAGCAGCTCGCGGTGCCCATACACCAGCATGTGCAGCAAGGGCTAGTGCagAGTGCCACTTACCCAGTGATATCTTCGGTGCAATCATTGCAGTTGCAACAAACGCAGCAACAAGTTAATAcacAACAGCCTCAACAACTTCAGCTACAAACAATACAGATTCACCCGCAGCACCAGCCTATACAAATACACACTGTGGGCGTCCAACAAGTACAACAGCAACAATTGCACGTGGCGACGTCGTCGTGCCAGTCCATGATACCAAACATATTACAACTGCAGCCAGCAGTGGCAGTGTCCGGGCTGGGCGCTCAGGACTTGGGCGGTGTGGCGCACCGCATCATACTACAGCCACAACCGCCGCCGCACAACCAGCACACTCTATACACTATACACCACTAG
- Protein Sequence
- MAAVNKTQPLKFDLICRACLQIKKDMRPLFEQLTATMLMGISKVQVSVGDGLPSQLCLQCVHQISRCHAFKELVERNDATLREQVKRLAEEALKREREEKEMLALQNCSEPYMQYMELPLATNPSQIIDNFFSEPTQAPAPVQQQQKDSFDSEKIFVVNEPPTETKEDDALNSDEESYLQMVVFQATSSVSPGRHVCNLCHKEFKHSRWLKQHMRSHTNWIKANCKKPPMCPICERTFKGPGMLKMHMRTHEQRPPKQPTCSVCQRTFATKTLLYRHRQTHFEQKTHQCTVCEKRFFSGYALRSHMARHRGERPHTCSLCSKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHVCNVCNKGFYEISKLNAHMRVHTGERPFECSSCDRKFAQQSALIYHRRTHTGEKPYSCKVCNARFTTSSARNNHLVTHTGNKRFICPVCFKGCTSRTELRVHSSKHTGEKLFGCELCSQRFSSASYLAVHRRYHTGERKYQCNVCQKCFMESNSLKKHMKTHESKNEIESSASSENSSETQMNDNSKANEVVETPPSIEQNETQVQSQDASVHEENVAQVHKKYRCGICVKTYMYLHSLKKHIMQVHGPTQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQQQQQIQQSQQQQHQAVAVQQQQLQQQAVLQVGNVQQLAVPIHQHVQQGLVQSATYPVISSVQSLQLQQTQQQVNTQQPQQLQLQTIQIHPQHQPIQIHTVGVQQVQQQQLHVATSSCQSMIPNILQLQPAVAVSGLGAQDLGGVAHRIILQPQPPPHNQHTLYTIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00319130;
- 90% Identity
- iTF_00035933;
- 80% Identity
- -