Cpin020942.1
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- -
- Assembly
- GCA_963556745.1
- Location
- OY750785.1:2840133-2848670[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.088 6.4 7.9 0.5 1 23 11 34 11 34 0.97 2 19 0.00018 0.013 16.4 0.3 2 23 57 79 56 79 0.94 3 19 0.34 24 6.1 1.0 2 19 101 118 100 123 0.87 4 19 0.0084 0.61 11.2 0.2 1 23 129 152 129 152 0.92 5 19 7.4e-05 0.0053 17.6 1.1 2 23 156 178 155 178 0.96 6 19 0.18 13 6.9 0.1 2 23 184 206 183 206 0.94 7 19 0.0002 0.014 16.3 0.5 2 23 214 236 213 236 0.94 8 19 0.062 4.5 8.4 0.1 3 23 244 264 242 264 0.93 9 19 5.7e-07 4.1e-05 24.3 2.2 1 23 270 292 270 292 0.98 10 19 2.9e-08 2.1e-06 28.4 1.2 1 23 298 321 298 321 0.98 11 19 0.18 13 7.0 0.5 2 23 410 432 409 432 0.95 12 19 0.013 0.94 10.6 1.9 2 23 455 477 454 477 0.94 13 19 0.00092 0.067 14.2 0.3 1 23 483 506 483 506 0.96 14 19 7.9e-05 0.0057 17.5 1.8 1 23 509 532 509 532 0.93 15 19 0.002 0.15 13.1 0.5 2 23 538 560 537 560 0.93 16 19 0.014 1 10.4 1.5 1 23 567 590 567 590 0.88 17 19 0.0002 0.014 16.3 0.2 3 23 598 618 596 618 0.93 18 19 1.9e-05 0.0014 19.5 3.1 1 23 624 646 624 646 0.99 19 19 6.5e-06 0.00047 20.9 1.0 1 23 652 674 652 675 0.94
Sequence Information
- Coding Sequence
- ATGCCGTTTAGATGGTCAACCAAGAACTATTTCACCTGCTACTTTTGTGGGAGCTCTTTCGAAAGCATCGCCATTTTAAAGCAGCATACGAATACAGTCCACGAAACTGATAAAACAGTCACACATAAATGTTATTACAGAAGGATCAAATTAGACGTGTCAGATATATCTTGCAAAAGATGTCCCAAAAAGTTCGAGACTTTGGAAGAGCTTTTGAACCATATGTCTTACGCCCACGATTTGAAGTTTAAGAAAGTGGTGGACAATTTAGTCTGTTTCAGACTTACGGATGGAGATCTCAGCTGCTTGCATTGCGGTGAAAAATTCGCCTTCTTCGGGACATTATTGATGCACGACAACAGATACCACAATAACTCAAAGACATTCGCTTGTAACACATGCGGAGAAGCTTTCATATCTAAATACATACTTGCCAGTCACATTTACTACAAGCATGATGAAAAAAGATGCAAAATTTGCAATGAAGTGTTTAAAACGGCCTTCGCCCTAACATCCCATAAACAAAAAGTCCATGAGATCGACAAGTTGAAGTGTCCGGAATGCAGTGAGATTTTAGGTAGCAAATATCTGCAGAAGCAACATTTGCAGTTAGTGCATGGCCTAGGAAATAAACCATTGGTTTGCGATATCTGTTCCAGAACTTTTGTGACTAGAAAAACTTTGAGGGATCACAAAGCGAGAGTTCATTTGAAGGAAAAGTCTATAGCTTGTGAGATTTGTGGGTTCAAAGTGTTTAGTAGAGGTGTGCTGACGTTGCATATGGTGAAACATAGTGATGCGCGACCATTCGTCTGCGATGTATGCCAAAAGACTTTTAGAAGAAAGAAGACTTTGGAAACGCATATGAAACTACATAAGAACTATAAGCCTTATGAGTGTAGTGATTGTGATAAAGCGTTTGTTCAGAATGGGAATTTGAAAAAGCATATTAGAGTGTGCCATTCTGaaaccGAAAGCATCGATCGCGAATCTGAGAAGAAACACAAAACCGACCTTCTGCAGATACTCACTGTGATTATACAGGATTCAACAATCATGCCATTCCGATGGTATTGCAACAAATACATGTGTTTCTTCTGTTGCTGCCCTCTGGACAACtaccttaaattaaaacagcacACGAAGTCAGAACACGAGGAaccgaaattgaaaaatattattgccGCTCTCAAAAATACAAGAATCAAGCTGGACGTATCAGAGATATCTTGTAAACGCTGTTCGAAGTCTGTACACAGCTTAGAAGATTTCCTGGCGCATGCAGAAACGGCACACGACCTGAACTTCAATAGAGACCTTAGCAAAGAGTTCTTTAGTTACAAACTATCCGAAGGCGATTTGAATTGCTTGGAATGTGGAGAGTCTTTCAGGTTTTTCGGCACTTTAATGATGCATACGcacaaataccataataaatcTAACACGTACGTATGCGAAATCTGTGGCCAAAGTTTCGTGTCTAAATTGAACGTAGCCTGCCACATTAGAAGTGTCCACGGCCCCCACGAATGTAACAAATGCCACAAAGTGTTCCCATCTCGTAACGGCTTGAAAGTACATTTGTCTGCCGTTCACAAAGATGGCAATATGAAATGTCCGAAATGCCCGAAGGTCTTAACCAGCCGGTATCTGAAGAAACGCCATCTTGCTTTGGATCATAACGTGCAAAGCAGTCAGCACAAGTGCGATCTCTGTCCAAAGGTTTTTACGACTGCCTGCATACTGTTAGTTCACAAAGCACGAGTCCATTTAAAGGAGAGATCTATTGCTTGTGAGATTTGTGGGTTTAAAGTTTTTGATAAAGATGAGTTGAAAAGACATATGGTGCGACACGACGACTCCAGGCCGTTTCAGTGCGATATTTGTGAGAAATCTTTTCAGAGAAAGAAGACTTTGGATTATCATAGGCGAACTCATACTAATGATAAGAGACATGCTTGCAAAGAATGCGGAAAGGCATTTGTACAGGTCGCTAGTTTGAAACTTCATATCAAAGTGCACCATTCTAGAAATGACACAACGTGA
- Protein Sequence
- MPFRWSTKNYFTCYFCGSSFESIAILKQHTNTVHETDKTVTHKCYYRRIKLDVSDISCKRCPKKFETLEELLNHMSYAHDLKFKKVVDNLVCFRLTDGDLSCLHCGEKFAFFGTLLMHDNRYHNNSKTFACNTCGEAFISKYILASHIYYKHDEKRCKICNEVFKTAFALTSHKQKVHEIDKLKCPECSEILGSKYLQKQHLQLVHGLGNKPLVCDICSRTFVTRKTLRDHKARVHLKEKSIACEICGFKVFSRGVLTLHMVKHSDARPFVCDVCQKTFRRKKTLETHMKLHKNYKPYECSDCDKAFVQNGNLKKHIRVCHSETESIDRESEKKHKTDLLQILTVIIQDSTIMPFRWYCNKYMCFFCCCPLDNYLKLKQHTKSEHEEPKLKNIIAALKNTRIKLDVSEISCKRCSKSVHSLEDFLAHAETAHDLNFNRDLSKEFFSYKLSEGDLNCLECGESFRFFGTLMMHTHKYHNKSNTYVCEICGQSFVSKLNVACHIRSVHGPHECNKCHKVFPSRNGLKVHLSAVHKDGNMKCPKCPKVLTSRYLKKRHLALDHNVQSSQHKCDLCPKVFTTACILLVHKARVHLKERSIACEICGFKVFDKDELKRHMVRHDDSRPFQCDICEKSFQRKKTLDYHRRTHTNDKRHACKECGKAFVQVASLKLHIKVHHSRNDTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -