Cpin013318.1
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- -
- Assembly
- GCA_963556745.1
- Location
- OY750773.1:11382092-11387328[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0019 0.13 13.2 4.5 2 23 143 164 142 164 0.96 2 13 1.8e-06 0.00013 22.7 1.8 2 23 170 191 169 191 0.96 3 13 0.0017 0.12 13.3 0.2 2 23 197 218 196 218 0.98 4 13 0.00011 0.0077 17.1 2.2 1 23 235 257 235 257 0.98 5 13 8.8e-06 0.00063 20.5 0.7 1 23 265 287 265 287 0.98 6 13 5.3e-05 0.0038 18.1 3.8 1 23 293 315 293 315 0.98 7 13 8.7e-06 0.00063 20.5 2.9 2 23 321 342 321 342 0.97 8 13 6.2e-08 4.5e-06 27.3 1.0 1 23 348 370 348 370 0.95 9 13 1.9e-06 0.00014 22.6 2.4 1 23 376 398 376 398 0.98 10 13 4.6e-06 0.00033 21.4 1.8 1 23 404 426 404 426 0.97 11 13 5.6e-06 0.00041 21.1 3.0 1 23 432 454 432 454 0.97 12 13 1.7e-06 0.00013 22.7 2.1 1 23 460 482 460 482 0.98 13 13 0.0027 0.2 12.7 1.4 1 20 488 507 488 510 0.94
Sequence Information
- Coding Sequence
- atgCGGGAGATAACCGCATCTTGTCGCACTTGCATGAAAAATAATACTCTTTTAATAAGCCTCTATCAACCCTTTCAATTTGAGGAAAACTATGACAACAAGCCTTTAGCAGACTTGTTATTGGATTGTTTAGCGATACAAaTATCAAAGGATGATGGCTTACCTCAGAACATTTGTCAGGATTGTGCTAAAGCAATACACTTTATACACAATTTCCGCAAGCAAGCCTTTGATGctgaaaaaggttttaaaacatatttagaaaACTTTGCCAAAGAAGTGCCTGATGATGAAACTCTAGTAAAACAAGAAATTGATGTGAAAGCAGAAATTGGTGACCAGTTTGAGTCCTATGATGATTACATCCCAGATGTTGGTTCACCGAAAACTGAAAATGAGCCAGTAGAGCATTCAGAGAAAGTGCTTGAATGTCACATCTGCCAAAAACAATATTCAAAGAAGAAGAAGTTCCTTAAACACTTACTAAGTCATGATATGCCTTCAACTTCATGCTCATATTGTGGGAAATCATTTCGCAAACAAGACTCTTTAGATAAGCATATCTCAAAACATTGTaagaattataataaatgtaatatatgtttggaaaattttaGAACAGAACCTCTCCTTTTGGAGCACATAAAGATACATTCTGATGTTGAAATAAAGACTGAAGTAGTCAATGTAATAGAAGGAGAATTCAGGTGTTCAGAATGTGACTTAGTGTTCAGAAAAAGAAGATCTCTGGCCATGCAtaagaaaaaacataaaaacaaaagcaacaaCTTATTTCAATGTGATATTTgtaaaaaggaatttaaaatgaaagcTGTTTTAAAGAGACACATGGATATTCATAAGTTAGAGAAACCATACAGATGTACAAAATGCTTTAAACAATTTTCAAGGCAGGATCAATATCGTGACCACTTAAAAGGGCATGAAGTTAAGTTAAATGTTTGTTCTTATTGTAATAAAGCATTCAGTCAATTGTGTAGTTTGAAGGATCATTTACGAACACACACCGGGGAGACACCGTTCCTGTGCTCCGAGTGCGGTAAGGGCTTCAACAACAGTTCCAATCTGCGCCAGCACATGATGCGGCACACTGGTGTCAAGGCTTACTCCTGCTCTGTGTGCCCTAAAACTTTCTGTACAAAAGgTCAAATGACGAGCCACATGGCGACGCACACGGGCATCCACCCGCACAAGTGCGAGCAGTGCGGCGCCGCGTTCACCAAGCAGAGCTCGCTCAAGAAACACACGCTCATACACCTCGGCGTGAGGCCCTTCGCCTGCGACACTTGCAACATGCGGTTCACCAGCAAAGACCATCTGCGTCGTCACGAGCGCATCCACACGGGGGAAAAACCTTACAAGTGCAAGTATTGCGAGCGCGCCTTCTCGCAGAGCAACGACCTCGTCAAGCACACCAGACAGCACATCGGACAGAACATATACCAATGTTCATTATGCTACTTGAGGTTCCGACTCAAAAGCGAGCTTAAGCAACACTACCCAGTCCACTACGTAAATGGCGAAGACCCACCCGTGGTCTCCATAGACAAAGGAATAACCGCACCCGTCCTCATGCTGAAGCCTGAAGAAGGCACCAAGGAGAACGAGGCGTTAAACCTTAAACCTTCTCGGGTGAACCTTGATTCATCCCGGGTGGACCTTGAACCACCGCAGGTGAACCTCGAACCATCCCAAGTGAACCTTGAACTACCTCGTTTGAACCCTGAACCAACTCGGGTGAACCCTGAACCATCCCGAGGGAACCATGAATCTTGCCGGGTGTACCTCGAACCGGAGATCTCGGCCCCTAATAAAGACTACACTAACGACATTGATGGAACAATCACGATCACAATCAGAAATGGCCTGGACAAAAGTGGCTTAGCGGGTGACAttactataaatataaatcCAGAAAAAAGTTAA
- Protein Sequence
- MREITASCRTCMKNNTLLISLYQPFQFEENYDNKPLADLLLDCLAIQISKDDGLPQNICQDCAKAIHFIHNFRKQAFDAEKGFKTYLENFAKEVPDDETLVKQEIDVKAEIGDQFESYDDYIPDVGSPKTENEPVEHSEKVLECHICQKQYSKKKKFLKHLLSHDMPSTSCSYCGKSFRKQDSLDKHISKHCKNYNKCNICLENFRTEPLLLEHIKIHSDVEIKTEVVNVIEGEFRCSECDLVFRKRRSLAMHKKKHKNKSNNLFQCDICKKEFKMKAVLKRHMDIHKLEKPYRCTKCFKQFSRQDQYRDHLKGHEVKLNVCSYCNKAFSQLCSLKDHLRTHTGETPFLCSECGKGFNNSSNLRQHMMRHTGVKAYSCSVCPKTFCTKGQMTSHMATHTGIHPHKCEQCGAAFTKQSSLKKHTLIHLGVRPFACDTCNMRFTSKDHLRRHERIHTGEKPYKCKYCERAFSQSNDLVKHTRQHIGQNIYQCSLCYLRFRLKSELKQHYPVHYVNGEDPPVVSIDKGITAPVLMLKPEEGTKENEALNLKPSRVNLDSSRVDLEPPQVNLEPSQVNLELPRLNPEPTRVNPEPSRGNHESCRVYLEPEISAPNKDYTNDIDGTITITIRNGLDKSGLAGDITININPEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00035014;
- 90% Identity
- iTF_00035932;
- 80% Identity
- -