Cpin004833.2
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- -
- Assembly
- GCA_963556745.1
- Location
- OY750762.1:11020893-11029607[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0077 0.56 11.3 1.5 3 23 658 679 657 679 0.96 2 23 0.37 27 6.0 0.3 1 22 1081 1102 1081 1102 0.95 3 23 0.63 46 5.3 0.2 1 23 1143 1166 1143 1166 0.91 4 23 0.0015 0.11 13.5 0.2 2 21 1176 1195 1175 1196 0.94 5 23 0.78 57 5.0 0.1 3 23 1205 1226 1203 1226 0.89 6 23 7.6e-05 0.0055 17.6 0.4 3 23 1247 1268 1245 1268 0.94 7 23 0.0048 0.35 11.9 2.2 1 23 1274 1297 1274 1297 0.95 8 23 0.14 9.9 7.3 0.0 1 23 1322 1345 1322 1345 0.90 9 23 0.021 1.5 9.9 3.4 1 23 1350 1372 1350 1372 0.97 10 23 0.017 1.2 10.2 0.2 1 23 1378 1401 1378 1401 0.95 11 23 0.0022 0.16 13.0 3.5 1 23 1414 1436 1414 1436 0.98 12 23 0.00019 0.014 16.3 1.8 1 23 1489 1512 1489 1512 0.97 13 23 0.0018 0.13 13.3 1.7 1 23 1573 1596 1573 1596 0.96 14 23 0.0026 0.19 12.8 2.1 2 23 1622 1644 1621 1644 0.95 15 23 0.095 6.9 7.8 0.1 2 23 1650 1672 1649 1672 0.93 16 23 0.011 0.78 10.8 0.2 1 21 1716 1736 1716 1737 0.95 17 23 0.0013 0.097 13.7 0.6 1 23 1747 1769 1747 1769 0.93 18 23 0.00012 0.0086 17.0 0.4 2 23 1857 1879 1856 1879 0.93 19 23 3.6e-07 2.6e-05 24.9 1.4 3 23 1886 1906 1885 1906 0.98 20 23 0.028 2 9.5 0.1 1 23 1925 1948 1925 1948 0.95 21 23 0.16 11 7.2 0.0 1 23 1970 1992 1970 1992 0.98 22 23 0.03 2.2 9.4 0.6 1 23 1998 2021 1998 2021 0.95 23 23 0.00028 0.02 15.8 0.4 1 23 2029 2052 2029 2052 0.96
Sequence Information
- Coding Sequence
- atgaGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGTGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGATTTGGAACCTCCCCTTCTTGCCTCGAAAATAAAGGATTGTGTCTCTGTTCAGATAAGCGAGAATGACGACCTGCCAACGAATGTCTGCAGGAAATGTGTGGATAACGTCAATAACTGGCATATATTCAAGGCGGTATGTGAAAGGACACAAAACAAACTTGAGTTACTGATAAAAAAGGATGGAAGCCAACTAGAAGAgataaaaataaaacttgaaccTCTGTCAGATGGTGCATATGATGATGGTGTGGTCATTGATGGCTCATACCCTGAAAATGATGGTGCGGCAGGGTCAGCCAAAGTGCAGCCAGAAGGCCCTCCAATCTTGGCATCATTGGGACTCACTCCGAGGAGTGATAAGAGATTCATAGATCCTCGAATGGACTGGCATCGAGTCCATGCAATACTGGATTTGGTTCAAGATGATGATGTCATTGACTCACTACAGTCCATAGAGGAATGCGATGTTGTGCGGCAGTCTGATCATGACTCTGAGTCAGAAAGTGAACTTCAAGGTGAAATAGATGACACCTTTATAGACTTCAAAAATGGATACATTTGTAAGAATAAAAAGCTATTGTCAAAAACTCCTAAGGTCTCTTCAAAAGatgtaaaaaatgcaaaaactaAGCAGGCTTCAGTTCTGAGAAAACGGAAATTTGAGGAACCTAAAAATTGTTTGCTTCCAAAACAAGCATGGCAGATGCTATTCACTGATGATTTGATTGAGTTAATTGTGGTTTCAACAAACCACAGGATTCTTAAAATGGGTCATAACATTGCATCATCTACCAACGTTGGAGAGATAAAAACACTTATTGGCATTTTGTACCTCCAGGGCATTATGAGACCGACTCACCAAGTTAGCCGTGACCTTTGGAATAAAGAGTATGGCACTCCATGTGTCAGGAATACTATGAAATATGACAGATTTAAGTTTCTTCTCCAGAATATATGCTTCGAGAATGAAGAAGAAGACAGCATCATAAAGTTTGATATAATGAAAAGGATGAGgaaattgtttgaaatattcGCTATGAACTGTAGAGCGTCATTTGAGATAAGTAGTATGGCAGTTATTGATGAAATCATTGTTCCCGTTTATGGCCCTTGCCCATTCAGATATCAGAATCAAAATAAGCCTCTGAAATGTGGTTTAAAAATGGTACTTTTGGTGGACCCAGTTAACTTTTATGTCAATAACCTGGATGTTATAACAGACTCATATTTTGGTCCCGAGGAAGTTGTGAAAAAAGTTGTTCAACATTTATCTGGTTCAGGAAAGACTATTATTATGGACAGTTGGTTCAcctcattaaatttaattgaagtTTTGAAGAAGGAATATGAGTTGTATTCCATTGCAGCTGTACATGCAGACGATGATTTAGTACCACCTGTGTTTTTATCTACTTacagaaaaaaagaaagttatCTGACTGGTTTCCTGGATGAAAGCATCCAGCTAACGTCATATATAAATGAAGattcaaaatgtttaaatgttGTCACAAATGACCTCAAATTTTATAAAAGGGGATACTCTTCTGCTAAACACATGTCAGTTGTTGCTTCTTATAAGAAAAACCATTCTGCCGTAGAAGTTGTTGATGTGTTAATGAATTACTACACTACTCTGCAACATACAAATGACTGGACCTTatctttatttttcactttactTAACATTGCATCAGTGAACGCTCAAGGAGTTGAGAGTGAGAAAGAGGATGATGAAGAAGAAGACGAGGAAGAGGCACGTGAACCAGTTCCAAAATATGCAAAAGTGCCGCGGATGCCCGAAGTATCCATCACGGTAATGAGGCCCTCGGGCGAAACACTACATGCTCGACAGGGTATCCAACAACTCGCCTCCAAAGACTGTCTCGTCTGTGGCCGCTCTTACAGGTATTCTCACAACGCAAGACGTCACGAACTCACTTCTCATAGCTTCGATAGGTACACTAACAAAATTACCCATAAAAAACAACCGTCATATATGCAACCAAAACTAAGGCCAAATCCTTTCAATCCAAAAGCGAGGTTAATGCCAAATCCGATTAgccataaaattaaactaatgtCCAAACCGATGCCAAATAAAATGGTTCCACACAAAGTTCTGACACAAACACCACCGAaacctactttaattaaaagtaaGAAGGGGGCACATAATAATTTGCCTTACCCTTTGCGTATTAAAGCTCTGAAAGAtttacaaataaagaaaaaggaacctcaaattttaaaaacgcTTTTGACAGCTAAACCAGAACTTTTAGTAGCTGAACCCGAAATTCCTCATTCGGGTCCGGAAAGTCCAGAAACATTGATTTCTGAGCCAGAAATCGCATCATTCCAAGTAGAAGCTGTATTGTCGGAACCAGATGCATATGATAAACAGCCAGATGATTCTTACGACCAGCAACAAGATGGATATGATCAACAAGCAGATGGTTACGATCAACAGGGTGGTGATGAAGAGGGTGAAGAAGATGAGACAAATAATCAAAATCAGCACTATGATACTGTTGACATGGAATCTgacaatgaaattgaaatagctCGGGAAAAAGATAATGAAGAAGAAGATCAAAATATGGAAGCAGATAATAGCCAAAACGGCGAGGAACATAATGAAGATGGTGCACAAAGTGATACTGAAAGAAACGCGGAAGATAATGAcgaaaatgaagaaaataatggTGCTGATGATAATGCGGAAGCTGTTGAAAATGATGTTGAGGGTGATGAAAATGAAGATGGAGAAAATGAAGAGCATAACGATAATCATGACGAGAACGTAGATGAAGACGATGAGGAACTTCCTCCAATGGAAATAGCTCCTGTCGTTGAAATCAATGAGGATATGCAGACCAACTCGTGCAACAGTGAGCAgaacgaagaagaagaagaagagcttgaagaaacagctgatttgaatGTCACCGCTGACGGTGTAGAGGGAATCAAAGAAATCGACCCAGATAAACTATATGTGACAAAAACACAGCGCGatttcattcaaaaatatcGCAATGTTATTGAACAGATCAATACGAAACGATGCCTTTGTTGTGACCGAGAACACCCTCGCAGGAAATCGGTCATACAACACTTACAGAAAAATGGACATAAAGTACCGAAACACACATGTTATAATTGTGTTGTTACTTTTGGCCATATTGGAGCTCTGTTGAGCCATATGCGTTCTAATTCATGCACTAATTTATGGAAAATTATCTATAATGAAACTGGAATTACTGATGATATGGTTTTAGAGGATCCTAAAGATGTAAAAGTTCAATATAAGGATATTTTTAACGCTAGATCATATGCTTGTAAACTATGTCCAGCAAAATTCCAATTGAagcaaaatattatgaaacacGTACTAGATGTTCATGAAGATGGCCAATCTCGAGTTCCACTTGTCTGTGTTCACTGTGGAGTTCGGTTCAAAGACAAAGGTTTGATTAAAAGGCATATTCGCAATGGTGGATGCACTGTTTACATAGCTTGTGATTTATGTTCAGAAAAGTTTGTAAACATGCAAGATTTTAACGACCACGCTTTAGGCGTTCATGCCGGAAGTTTTGATCAATCTGACAATCAAAGTAAATGCGTTGATGGGCGACCTACAGATTGCCCAATATGTGGCAAGAAGACCAGTAACTATCCGAATTTGACCAAACATTTGAAGGCTTTCCATAACGAAGAAAAGCCACATTACTGTCAACATTGCGACGTCAAATATGAGCAACTGGCTGATCTTAACAAACACATTTACATGGAACATTCTGATTTCAGTTTTGCGCAAAGTAGTGAACCAGACATGTCTCTTGTGAAAGAAGAGGCCGAAGAGTATCATTATTCGTGTACAGAATGTAACGCTATTTTTGAAACTGTTGACGCATGGACTGATCACCAAGTTGCAGAACATAATCAAACCGCTCATCACTGCGACCAATGTGAGAAGAAATTCTTACGACCATCTGAGCTCGCTGAGCATAAGAACACCCATCTGCGTGTCAAATTTTATCCTTGCAGCGTTTGTTCAAACTCATACAGTACGCCGCAAAAGTTGTCCGAACACGTTCAAAATGCCCATCCCGGTGTAGGACAATTCGCATCTATGGAGTCGGAATTTTACTGCCACATTTGCATAAGATCGTTCAAAAGTCGCCAAGCTTACTCCAATCACATGCGTATACATGCTAAAGTACCAACTACTAACCGAAAGCCGGGAGAACCGAAAGGAGGTTTTGCGCCACAAATAATTGGCAAGCCTATCAAACAATTTACGGCGGCGGTCCAACAAGCCGCATCCAACATAGTCTTTAAACCAAACTGCAATGTTCCTAATGCTCCATATTCGTGTGATATTTGCGGTAAAGGTTTTAtgcataagaaaaatatttggaaGCATAAAAAAGTACTTCACGCTGACCTCGTCAATGATAGGAACGATAGTGAAGAAAATACTATGCATGCTTCTACCGAAGAAGACgagtataataattttgatgaaaatggaGCTTTACTGTCTACACCGCAATTCAATAGTTTCAACTTTGCCAATTTTAATAACGCACAACAGCAACCATCCCAAGACCCGATGCCTTTTTCGTGCGAACTTTGTTTCAAACGATTTCCACTTAGAAGTAGTTTGTGGAAACATAAACGAGCAAAACACGGcatcataaatattaatgcgAGTGGTACTGACACTCAAGTTCAAGTGACTCCTAATGAAGCCGGTAATAGATCCAGTTGTACGATATGCAGGATTACCTTTTCTGACAAGAAGTCTTACTATCGCCATAGAAAGAACGTTCATAAATCGACTACACAAATGTGTAAAATATGCGGTAAGCCACTTAACTCGACTTTGGAGTTGTACGAACATCTAAAAGCTGCACACGCAAGAGAATTACTAGGATACGATGCCAGCCAAGGTTCCAGCAAAATGACAGATATGAAAGAAGAATTGGTTGAGGATTACGAGAACGATCAGGATTCAGCAGACCCTGGCGTCGAGTATCAAGCGAAGTACCCATGCGACACGTGTGGCAAACAGTTTGTTGGATTACTAGCACTACAGAATCATCAGTGTATAAATCAAATACCATCGCAACCTCAGACGTTCGACTGTGAAATATGTCACAAGAGTTACACGTCTATAGCGGCGCTTAAAAGCCACCGCGGCTGGCATCTACGATCGCCGGATGGCAAAGCGGCTGCGAATAATACCGGGCTCTGGATGCCTCAACATAAAGTGACCAGTAAAGTGAGTAAATACGAAGTAGTGGACCCCGTACAGTTGGCGCGCCCCGTACACCAGCCGCCCGCCGCCACCGTGACCGCCAAAAGGAGACTTCCACCAGAAGTGGAAGTCACCGTCGTAAATCCAAATAAAAAGTTACGATCGGACGATTCCGTCGAAATGGAACAGGCCGGTTCCGTAGAGGATAAATACTGCACAATTTGCGATAAAGAGTTTACGAAACGCGCCGCTTACCAGCGTCACATGGACGAGGTGCATCAGCCGAATTCCGTGTTCTGTCCCGTTTGCGACAAGAGCTTCACTCGGAAGTCGACTCTACTCGTCCACATGAAGAAGCATTACGAAGGCGGCGAGGGCAGCTCGACCGGGGCGGCCCAAGCGGAGGAGGAAGGGTACGCGTGCGACGTGTGTGGAGCGCAGTACGACAGCGAGAAGGCGTTGATGAACCACCGAGCTCGGCAGCACGCGGAGGACGAGGGCGAGTCGGATGACGAGGGaggcgtggcggcggcggcgcagcCGGGCGAGTTCACGTGCGCGCAATGCGGCGACGGCGTGGCCACCCCGCGCGACCTCATCGCGCACCGCTCCATGCACGCGACCCCCACCAAGTTCTTCTGCAACATCTGTAAAGTTTACTTTGCGAGAGCTCTCGATCTGTCCTCGCACACGCGGGCGAGGCACTCCGACAACGAAAAGGTGTTCTTTCCATGTGCCATGTGTGACCGTTTTTACATGAACAAGAAGAGTTTGCAGCGACATATCGAAATGGCGCATTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDLEPPLLASKIKDCVSVQISENDDLPTNVCRKCVDNVNNWHIFKAVCERTQNKLELLIKKDGSQLEEIKIKLEPLSDGAYDDGVVIDGSYPENDGAAGSAKVQPEGPPILASLGLTPRSDKRFIDPRMDWHRVHAILDLVQDDDVIDSLQSIEECDVVRQSDHDSESESELQGEIDDTFIDFKNGYICKNKKLLSKTPKVSSKDVKNAKTKQASVLRKRKFEEPKNCLLPKQAWQMLFTDDLIELIVVSTNHRILKMGHNIASSTNVGEIKTLIGILYLQGIMRPTHQVSRDLWNKEYGTPCVRNTMKYDRFKFLLQNICFENEEEDSIIKFDIMKRMRKLFEIFAMNCRASFEISSMAVIDEIIVPVYGPCPFRYQNQNKPLKCGLKMVLLVDPVNFYVNNLDVITDSYFGPEEVVKKVVQHLSGSGKTIIMDSWFTSLNLIEVLKKEYELYSIAAVHADDDLVPPVFLSTYRKKESYLTGFLDESIQLTSYINEDSKCLNVVTNDLKFYKRGYSSAKHMSVVASYKKNHSAVEVVDVLMNYYTTLQHTNDWTLSLFFTLLNIASVNAQGVESEKEDDEEEDEEEAREPVPKYAKVPRMPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTSHSFDRYTNKITHKKQPSYMQPKLRPNPFNPKARLMPNPISHKIKLMSKPMPNKMVPHKVLTQTPPKPTLIKSKKGAHNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPELLVAEPEIPHSGPESPETLISEPEIASFQVEAVLSEPDAYDKQPDDSYDQQQDGYDQQADGYDQQGGDEEGEEDETNNQNQHYDTVDMESDNEIEIAREKDNEEEDQNMEADNSQNGEEHNEDGAQSDTERNAEDNDENEENNGADDNAEAVENDVEGDENEDGENEEHNDNHDENVDEDDEELPPMEIAPVVEINEDMQTNSCNSEQNEEEEEELEETADLNVTADGVEGIKEIDPDKLYVTKTQRDFIQKYRNVIEQINTKRCLCCDREHPRRKSVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNSCTNLWKIIYNETGITDDMVLEDPKDVKVQYKDIFNARSYACKLCPAKFQLKQNIMKHVLDVHEDGQSRVPLVCVHCGVRFKDKGLIKRHIRNGGCTVYIACDLCSEKFVNMQDFNDHALGVHAGSFDQSDNQSKCVDGRPTDCPICGKKTSNYPNLTKHLKAFHNEEKPHYCQHCDVKYEQLADLNKHIYMEHSDFSFAQSSEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQTAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQNAHPGVGQFASMESEFYCHICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGGFAPQIIGKPIKQFTAAVQQAASNIVFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVNDRNDSEENTMHASTEEDEYNNFDENGALLSTPQFNSFNFANFNNAQQQPSQDPMPFSCELCFKRFPLRSSLWKHKRAKHGIININASGTDTQVQVTPNEAGNRSSCTICRITFSDKKSYYRHRKNVHKSTTQMCKICGKPLNSTLELYEHLKAAHARELLGYDASQGSSKMTDMKEELVEDYENDQDSADPGVEYQAKYPCDTCGKQFVGLLALQNHQCINQIPSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQHKVTSKVSKYEVVDPVQLARPVHQPPAATVTAKRRLPPEVEVTVVNPNKKLRSDDSVEMEQAGSVEDKYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSTGAAQAEEEGYACDVCGAQYDSEKALMNHRARQHAEDEGESDDEGGVAAAAQPGEFTCAQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -