Cpin018069.1
Basic Information
- Insect
- Catoptria pinella
- Gene Symbol
- -
- Assembly
- GCA_963556745.1
- Location
- OY750780.1:1356461-1358053[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-09 1.6e-06 28.2 0.0 1 38 3 39 3 41 0.93
Sequence Information
- Coding Sequence
- ATGTACACAAATGAAAATCTACTAAAAGCCTTGGATGCAGTTAAAAAAGGTATGTCCAAAAAACTGGCCTCGAAAACTTACAATGTGCCGAGAGGAACTATCCAGTCGCGATTAAAAAAGCCGTGCAAGGAATTACCAGGTCCTAGGCCAATATTGTCGACAGAAGAAGAAGGAGTTTTGGTACAGTGGGTTGTAGATTGCTGTCGGAAAGGATTTCCAAAAAGAAAATCTGATTTACAATTAAGTGTAGCAAACTTCTTAAAGAAGTCAGGAAGAGAAAACCCCTTTAAAGATGACATACCTGGAAAAAAATGGTATGATCTTTTTATGCGCCGTCATCCAGAACTCAGCGAACGCACTGTCGAAGCTGTCACATCAGCCAGTGCTAATGTGTCAGAAAAAGACATCAAAGGGTGGTTCCACAAAATTGAGCTTTATCTTAAGGAAAACAACTATTTTGACATCTTACAGGACCCAGCTCGTGTTTTTAATGGGGACGAATCTAACTTTCAGTTATGTCCCAAAAATGGCAAAGTTATTTCGTTAAGAGGAGAAAGAGACGTGTATGAAGTAGATCACGCTACAGCTAAAACAGCCCTTACTGTACTGTTTACATTTTGCGCCAACAGAGATGTAACACCTCCATTAGTTGTGTTTCCCAACAAGAGGCTTCCCAAGGATATAACATCATCAGTTCCAGATGAGTGGGGCATTGGTCTAAGTGATACTGGCTGGATGAAGTCTGAACTTTTCtatgattatataaaaaatgtgtttcatccttACCTCTACAAAAGAAAGGTAACATTCCCCGTCATACTATTTGTAGATGGACACAAAACACATCTCAGTCTTGAAGTAAGTGAATTGTGCAGCAAATTGCAGATTGTTTTGATAGCACTTTATCCCAACGCCACACGGATTCTACAGCCAGCTGACGTGTCAGCATTTAGACCTCTCAAAACTGCATGGAAGGAAAGTGTCCTAAAAAGGAGGAGAGATCATCCTTCGGAGACTCTCACAAAGAACAATTTCGTACCTGTTCTCAAAGAGGCTTTAGAGGTTggtgtcaaagatacgacaattATAAATGGATTCAGGACTACTGGCTTATGTCCTTGGAACTCTGATGCCATTAACTACAATAAATGTTTGGGTAAAGGAAGTAAACACAATGAAAAACCAAAAGAAGACAATTTAAAACTACAAGACAattcaaataaagaaaaaattatgACACGCGAAACTTTAGAAAACATTGTAGGTCAAGAAAAGGTTACATTTCTGCAAAGAACGCCGCTTGAAAATCTTACAGAAACAGAAAGGATTTTGAAgaaaatttgttgtttttttgatACGTCCACAACCAAAGAAACTCACATCGAAATTGAATATTCCGAAGCAGTTGGATTTCAAGACATTGATCAATTACCAGTAATATTAGCAGAAGATTTTGTAGATGATATGCAAGCTATGTCTATAACGAATGAACAATGTTATAACAATACTGAAGATTGTCTTGGTAGTGCGCAATTGGTATGTCTTGATAGTCAACAATATTTACTAACACCAGTAAATTACAGGACGTTTTAA
- Protein Sequence
- MYTNENLLKALDAVKKGMSKKLASKTYNVPRGTIQSRLKKPCKELPGPRPILSTEEEGVLVQWVVDCCRKGFPKRKSDLQLSVANFLKKSGRENPFKDDIPGKKWYDLFMRRHPELSERTVEAVTSASANVSEKDIKGWFHKIELYLKENNYFDILQDPARVFNGDESNFQLCPKNGKVISLRGERDVYEVDHATAKTALTVLFTFCANRDVTPPLVVFPNKRLPKDITSSVPDEWGIGLSDTGWMKSELFYDYIKNVFHPYLYKRKVTFPVILFVDGHKTHLSLEVSELCSKLQIVLIALYPNATRILQPADVSAFRPLKTAWKESVLKRRRDHPSETLTKNNFVPVLKEALEVGVKDTTIINGFRTTGLCPWNSDAINYNKCLGKGSKHNEKPKEDNLKLQDNSNKEKIMTRETLENIVGQEKVTFLQRTPLENLTETERILKKICCFFDTSTTKETHIEIEYSEAVGFQDIDQLPVILAEDFVDDMQAMSITNEQCYNNTEDCLGSAQLVCLDSQQYLLTPVNYRTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00850617;
- 90% Identity
- iTF_00786706; iTF_00850617;
- 80% Identity
- -