Ccar044395.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- NFXL1
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000008.1:104703228-104717976[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.45 9.6e+03 -1.5 0.5 1 5 17 21 17 27 0.70 2 14 5.5e-05 1.2 11.0 15.2 1 18 42 59 42 60 0.91 3 14 2.5e-11 5.3e-07 31.3 14.9 1 19 69 87 69 87 0.99 4 14 2.6 5.7e+04 -3.9 1.1 5 10 115 120 115 120 0.87 5 14 0.0011 24 6.9 7.0 10 19 136 145 134 145 0.94 6 14 0.0006 13 7.7 6.0 1 12 155 165 155 165 0.96 7 14 0.44 9.3e+03 -1.4 1.6 15 19 195 199 194 199 0.84 8 14 0.71 1.5e+04 -2.1 0.2 9 11 216 218 214 219 0.72 9 14 0.43 9.3e+03 -1.4 1.2 6 10 225 229 224 229 0.88 10 14 1.8e-05 0.39 12.6 6.4 1 11 235 245 235 246 0.96 11 14 0.48 1e+04 -1.6 1.5 14 18 259 263 259 264 0.84 12 14 0.0007 15 7.5 13.4 3 18 276 291 275 292 0.94 13 14 0.00012 2.7 9.9 12.9 1 17 337 352 337 357 0.87 14 14 0.96 2.1e+04 -2.5 0.3 5 10 386 391 386 391 0.86
Sequence Information
- Coding Sequence
- ATGTGGCTCGCGAGCCACTGTTTAGAAAGAATAACAAAACCATGCAGATGTGGTTTACATTCCAAAGAAGTTCCATGCCAAAAAGAATACTTAtgtgaaacaaaatgtaaaaGAATTAGAGACTGCAATTATCATCCATGCAATAGAAAGTGTTGTGATGGTTCTTGTCCACCTTGTGAAAAATCATGCAGTAAAACGTTGAAGTGTGGTAATCATAAGTGTCAGTCGGTGTGCCACAGAGGACCATGTTATCCTTGTCCAAGAACTGTTCAAGTGTCGTGCAAATGTGGAACTACTACTATTGTTGTACCCTGTGGCAGAGGTGTCCGTTCAAGACCTCCACGCTGTAATAAACGATGCATGATGCCACCAGATTGTCATCATCCATCCAGACAGCCGCATAATTGCCATTTTGGTTCTTGTCCACCATGTAAGCAAGTTTGTGGTATTAAACATGATCTTTGTGGACATGATTGTCCTTCACCTTGTCATTCCGCTGTTTTAGTTAATGTTAATGAAGATGCGAAACCAAAAGGAATGTGGGATAAGgtGGTGCCTCAGTATGAGTTAAAAGCACTTAGTTGTGATCCTTGCAAGGTACCAACTGAAGTAACATGCCTTGGTGGTCATGAAAAGTATGAATTGCCTTGTCATCGAGCATTTTCAACTAGTTGTGAGAAACCTTGCGGTCGGAAACTTGCATGTGGCAATCATTCTTGCCAATTGAAATGTCATGTTGTGTTAGGCGCTCCTAATGAAACTATTGCTGGAGAGAATTGTGAACCATGTGAAAAAGGCTGTGAACTGGAACGACCTCCGAATTGTAAGCACAGATGTCCACGCGCATGTCATTTACCACCATGTCCGTCTTGTATGATAAATCTTAAGTTACGCTGTCATTGTTCGCTCAACCAAGTGTTTGTCAGATGCGGTGAATATAATGCAGCGCTTGttgaaaaacaaattgaaatgcTCACTTGTAATAATCAGTGCCCTAAAATcTTGCCTTGTGGTCACCGATGTGCTAGTACTTGTCATCCTGATGAATGTCCAACTCCTGAACAATGCAGACAAAAAGTTAAGATGTCTTGTCGTTGCAATCGTATCAAAAAGGACTTCAGATGTTTTATGGTAAAATCTGGCGAAACCTTAATTAATTGTGATGATGTCTGTAAAGCaaaagctgaagaagaaaaacagAAAAAAGAATTATTGATAAAGAAACAACAAGAATTAGAAGAATTAAAGAATAAAGAAGAATTAGAAAAATTCCAAAAGAAGTTTCAAGGCCGTAAAAAACACCGAGAACGCCGTATTGTCGATGAGGaagataaaagaatatttttggTTAGAAATTGGCAATGGTTTGCAGCCAGTGGAAGTATTAGTTTGGCTATTATtgctttttattgttttaattcgtttcaTTGA
- Protein Sequence
- MWLASHCLERITKPCRCGLHSKEVPCQKEYLCETKCKRIRDCNYHPCNRKCCDGSCPPCEKSCSKTLKCGNHKCQSVCHRGPCYPCPRTVQVSCKCGTTTIVVPCGRGVRSRPPRCNKRCMMPPDCHHPSRQPHNCHFGSCPPCKQVCGIKHDLCGHDCPSPCHSAVLVNVNEDAKPKGMWDKVVPQYELKALSCDPCKVPTEVTCLGGHEKYELPCHRAFSTSCEKPCGRKLACGNHSCQLKCHVVLGAPNETIAGENCEPCEKGCELERPPNCKHRCPRACHLPPCPSCMINLKLRCHCSLNQVFVRCGEYNAALVEKQIEMLTCNNQCPKILPCGHRCASTCHPDECPTPEQCRQKVKMSCRCNRIKKDFRCFMVKSGETLINCDDVCKAKAEEEKQKKELLIKKQQELEELKNKEELEKFQKKFQGRKKHRERRIVDEEDKRIFLVRNWQWFAASGSISLAIIAFYCFNSFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -