Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.59 1.3e+04 -1.8 1.1 15 19 97 101 96 101 0.81

2 8 0.079 1.7e+03 0.9 0.8 4 10 132 138 131 138 0.95

3 8 7.4e-07 0.016 17.0 19.7 1 19 146 163 146 163 0.98

4 8 1.1e-09 2.3e-05 26.1 14.2 1 19 199 217 199 217 0.99

5 8 0.73 1.6e+04 -2.1 1.8 6 10 242 246 241 246 0.89

6 8 6.8e-10 1.4e-05 26.7 14.7 1 19 252 270 252 270 0.99

7 8 1.4 2.9e+04 -3.0 0.6 5 10 294 299 294 299 0.75

8 8 0.00058 12 7.8 12.9 1 17 305 321 305 321 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.59	1.3e+04	-1.8	1.1	15	19	97	101	96	101	0.81
2	8	0.079	1.7e+03	0.9	0.8	4	10	132	138	131	138	0.95
3	8	7.4e-07	0.016	17.0	19.7	1	19	146	163	146	163	0.98
4	8	1.1e-09	2.3e-05	26.1	14.2	1	19	199	217	199	217	0.99
5	8	0.73	1.6e+04	-2.1	1.8	6	10	242	246	241	246	0.89
6	8	6.8e-10	1.4e-05	26.7	14.7	1	19	252	270	252	270	0.99
7	8	1.4	2.9e+04	-3.0	0.6	5	10	294	299	294	299	0.75
8	8	0.00058	12	7.8	12.9	1	17	305	321	305	321	0.96

Coding Sequence: ATGGATTCTTTAGaaTCAGTATTGAAATCGTATTCTCAGTTGGATAATTCATCTGATCTTGGCCGTACTCAAAAATATTTAGAAGATGCATTCCAGTCAGGAGCTGCCATTTGCCTTATTTGTATTGCTACTATCAAAAGAGCTGATTCTATTTGGAGTTGTGTCGAATGCTTTTGCTTCTTTCATGTTCTTTGCATACAAAGATGGGCAAAAGATAGTATTGCTCATCAGAAACAAGGATTGGAAGATAGACAGCAAACAAAACACGCCATTGAATTCTCATGGGCatgTCCAAAATGTCGTAAAGATTATCTTTCGTCGAAGATACCAcagaaatattattgtttttgtggTAATACTGAAAATCCTGAATTTCAGCCTTGGTTGGTACCACATTCATGTGGTGAGACTTGTAACAAAGAATTGAAACCAAGTTGTGGACATCATTGCTTGCTGTTATGTCATCCAGgGCCTTGTCCACCATGTCCAAAAACAATCAAGTTAAAATGTTATTGCGGGAGATCTGAATCCAGATTACAGCGTTGTAGTAATAAATACTGGTCCTGTGGTAAACAATGTGGTCGCAAATTATTATGCGGGAAACATAGTTGCGCCAATGTTTGTCATGATGGTACTTGTCAACCATGTCCTGAACGCTCTGTGCAGTACTGTATGTGTGGTAATGAAAAGTCTGTTAGAGAATGTGCTGAACCACAGTGGCAGTGCAAAAAGGTCTGTAATAAATGGTTAGACTGTGGTAACCATCGGTGTTCAATTGTTTGCCACGAAGGTGAATGCGGTCCTTGTCCTTTGTCTTTGGAACGGAGTTGTCCATGTGGTAAATCTGCATTCCTGTTGCCTTGTGTTGAGGAAACGCCTACTTGTGGTGATACATGCGGTAAAATGTTAGAATGCGGACAGCATAAATGTTTCCAACGTTGCCATCATAACAAATGTGGACCGGTTAGGTCTGGAGTCTGTTAA
Protein Sequence: MDSLESVLKSYSQLDNSSDLGRTQKYLEDAFQSGAAICLICIATIKRADSIWSCVECFCFFHVLCIQRWAKDSIAHQKQGLEDRQQTKHAIEFSWACPKCRKDYLSSKIPQKYYCFCGNTENPEFQPWLVPHSCGETCNKELKPSCGHHCLLLCHPGPCPPCPKTIKLKCYCGRSESRLQRCSNKYWSCGKQCGRKLLCGKHSCANVCHDGTCQPCPERSVQYCMCGNEKSVRECAEPQWQCKKVCNKWLDCGNHRCSIVCHEGECGPCPLSLERSCPCGKSAFLLPCVEETPTCGDTCGKMLECGQHKCFQRCHHNKCGPVRSGVC

Sequence clustering based on sequence similarity using MMseqs2