Ccar009906.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- Thap1
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000001.1:161598695-161619482[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.4 2.3e+02 4.3 2.5 1 23 472 495 472 495 0.94 2 11 0.0011 0.18 14.1 0.3 2 23 499 521 499 521 0.97 3 11 0.00058 0.092 15.0 0.5 2 23 529 551 529 551 0.95 4 11 0.63 1e+02 5.4 8.1 1 23 557 580 557 580 0.92 5 11 0.0069 1.1 11.6 0.6 3 23 587 608 586 608 0.97 6 11 0.00033 0.053 15.7 0.7 1 23 619 642 619 642 0.93 7 11 0.033 5.2 9.5 0.2 1 23 663 685 663 685 0.97 8 11 0.76 1.2e+02 5.2 1.0 2 22 703 723 702 725 0.88 9 11 0.38 61 6.1 1.6 1 23 760 783 760 783 0.93 10 11 2.9e-06 0.00047 22.2 1.4 1 23 792 814 792 814 0.97 11 11 0.044 7 9.1 6.3 1 23 820 842 820 842 0.95
Sequence Information
- Coding Sequence
- ATGCCTGGTTGTTCTGTTATTGGTTGTAAAAATAGATCTGAACATGGCTATAGAATGTTTTTGTTGCCTCAGGGCGAAAGAAATGAAGATAGAAGAAAACTATGGGTAACGAATATTGGAAGACCCGATTTACCAAATAAGTCAGTAGTTTGTGAGgCTCATTTCACTTCAgatcaatttgaaaataaaagaCTAGATAATAAACGCTTATTAAAGTGGAATGCTGTACCAACCATATTTCCTGCTTTTGCACCTGATTCTAATAAAAGAACAAGAAAAGTTTCTAAAAAGTTACCAGCAAAATCTAACATTAACAATGAAACTACAAGTAATGAATGTAATACTAATTCAGTTTTAATGCCAGATAGTGACAGCGGTAACGCCGAAATTAGCACCAGTGCTAATAATAATGATTCGAGCCCTTGTGTTAAAAGGTCAACAaggaagagaaaaataaaatttactgtgaaTGATATTTATTCATCAAATATTGATAAAACTCTTTTAGAAGAATGTCATGAATCTACCAAAAAAAGTGTAAAGAGTCCATCAAATTTCAGAAAGAAAAAACCAGTTGGTAATAAAACATGTTCTTCAAGATTAGAAAATTTTGCTGAAGTAATTTCTACTAAAACAACACCTAAAAGGGTTAAATTTGCAGTCTCAAGTGACAAAGGCCCTCCATTCTCTACAAAGGTAGTACGTGTCAGTACTGAAAATATTTGCAGAATTTGTGGAAAATTAAGTGATGCCTTAGTACCAGTGTTTTACAGTGGTAATGATACAGAAGAGGAAGATATTCCTTCTTTGATAAATACACTTTTACCAATAAAGTGTCCAACATATATGACACATCCAGCACGAGATAAAAACGATGCCAGTGGTACAAGTTCAGAAGAAGAAAATTTGTATGTTACAAACGAGGAAGATacagataaattattaatgagtgTTGATGTTGGTGAAGGAGAGGGAGATGATGTTGATGATTATGATAAAGAAAATGAGTCGTTGCAACATAGCAAAGCAAAACCTATCGAAAAGTCAAATTCAggtAAACAATACAAGATTGGTATAACGTTAGTAAAAAATAAAGACTGTAATGAAGATGctgcattaaatttaaattcattaaaatctatATTAGTCACAAAAGTCAATCAGTTATTTCAGAGTATATGTAATGACGAAACTATTGGAAAGTCATTAGTAAATAAAAGTGAAGATCATGACGATGATAATACCAGTGATGCAGAATGGAATAATGTAACCAATAGGTATTCTGGGAATAATTTAGGCGTtattaaatctaatgttttaaaacaagCTAGTCATAGAAAACGAAATTTAGTCATTTCACGGGTATCATCCATTTCAAAAAGAATGGaatctttcaataaaaatgatGGACCATATTTATGTAGCAAGTGTGGTCATGTGTCGTTAAGACGTAGAGCATATTTGAAACACCTGAGACTTTTTCATGTTGAAAGAAAATGTAACTATTGTGATGCAATATTACCATCCAGTTCTGATTACAAGAAACATTTAAGATTGATGCACTATGAGAAGATCAGCATAAATCGTTGTGAAATATGTGATACAACATTCATTAAAAAAGAACGATTGGAACGtcataaattaattattcataatatTGGTGAATATCACCACTGTGACATATGCAACAGAAAATGTGCTTCTAAGCAGCAATTGCACAGTCATAAAAATGATGTACACAGAAAGCAAGAAAATCTTTGTCAAGACTGTGGACGAATGTTTGCATCGTATCGGAAAATGTTAACTCACTGGAAAATATTTCATTCACCCCAGTCGAATGTAGCCcagaaaattttttattgcaGTATATGCAATAGGCAGTTTAAGAGATCAGGTGCTTTAGCAATTCACAATTTCACTATGCATAACATTGAATATGATCGAAGTACCATTACTAGACTGTCAAAAAGTGTTGCCAACACTACATTCTCTTGCCTTATTTGTAATGTTAGAATTACAGACATGGAGTTGTTGAAGCAACATATGGATTACCATATGAATGATGAAGAGgttAAAAAGTTGTCTGGCAATGATGTAGGAAAGATTAAATGTTTATTATgcaacaaatattttgaaaaggaAAAAGATCTTGGATTGCACAGATATTTTTATCACAAGGAAATGCCATTTGTCTGCAGTACTGATGGTTGTCTTAGTTCATTCTGGAAAAAAACTGCACTAGTTGTTCATCAGTTGTCTGAACACAAAACACGGAGTTATTCATGTACCATGTGCTCAGAAACATTTGAAGATTTTAGAATTAAACGGCGTCATATGATAAAAAACCACCCAGGCAGTTCCAACACCAAAACATTTAGCtgtaatgtttgtaataaacaatttaatactaAATATTCATTGAATGTTCATATGGTAATGCATTCAGATGAGAGGGAACATAAGTGCATATATTGTGGTAAAGagtttaaactaaaatttacattGTCAAGGCATCTACAGCATCATCAGAAACATGATTATTTAGCCGATGATAATGTAAAGGTGAAGAAGAGAAATTCAATAAGTATTAGAACATTTGATGTCGTTAGAAATCAAACTAATATACCAACTGCTGTAAATGAAACTAGTGAATTGGTAATTGAAAATAATGGTACAATTGTTCAAAATCTGCCTGTCTTGTCAGGAATACCaacaaaaccaataaaaattgtagtcgtcaaaaaatag
- Protein Sequence
- MPGCSVIGCKNRSEHGYRMFLLPQGERNEDRRKLWVTNIGRPDLPNKSVVCEAHFTSDQFENKRLDNKRLLKWNAVPTIFPAFAPDSNKRTRKVSKKLPAKSNINNETTSNECNTNSVLMPDSDSGNAEISTSANNNDSSPCVKRSTRKRKIKFTVNDIYSSNIDKTLLEECHESTKKSVKSPSNFRKKKPVGNKTCSSRLENFAEVISTKTTPKRVKFAVSSDKGPPFSTKVVRVSTENICRICGKLSDALVPVFYSGNDTEEEDIPSLINTLLPIKCPTYMTHPARDKNDASGTSSEEENLYVTNEEDTDKLLMSVDVGEGEGDDVDDYDKENESLQHSKAKPIEKSNSGKQYKIGITLVKNKDCNEDAALNLNSLKSILVTKVNQLFQSICNDETIGKSLVNKSEDHDDDNTSDAEWNNVTNRYSGNNLGVIKSNVLKQASHRKRNLVISRVSSISKRMESFNKNDGPYLCSKCGHVSLRRRAYLKHLRLFHVERKCNYCDAILPSSSDYKKHLRLMHYEKISINRCEICDTTFIKKERLERHKLIIHNIGEYHHCDICNRKCASKQQLHSHKNDVHRKQENLCQDCGRMFASYRKMLTHWKIFHSPQSNVAQKIFYCSICNRQFKRSGALAIHNFTMHNIEYDRSTITRLSKSVANTTFSCLICNVRITDMELLKQHMDYHMNDEEVKKLSGNDVGKIKCLLCNKYFEKEKDLGLHRYFYHKEMPFVCSTDGCLSSFWKKTALVVHQLSEHKTRSYSCTMCSETFEDFRIKRRHMIKNHPGSSNTKTFSCNVCNKQFNTKYSLNVHMVMHSDEREHKCIYCGKEFKLKFTLSRHLQHHQKHDYLADDNVKVKKRNSISIRTFDVVRNQTNIPTAVNETSELVIENNGTIVQNLPVLSGIPTKPIKIVVVKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283615;
- 90% Identity
- iTF_00283615;
- 80% Identity
- iTF_00283615;