Basic Information

Insect: Catonia carolina
Gene Symbol: -
Assembly: GCA_035578175.1
Location: JAQMRL010000001.1:77851814-77884690[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.1e-06 0.00034 22.7 0.9 1 23 1008 1030 1008 1030 0.98

2 8 0.94 1.5e+02 4.9 6.4 1 23 1036 1058 1036 1058 0.98

3 8 3.1e-05 0.0049 19.0 3.2 1 23 1064 1086 1064 1086 0.99

4 8 5e-05 0.0079 18.3 2.2 1 20 1092 1111 1092 1114 0.93

5 8 2.2e-05 0.0036 19.4 6.0 1 23 1120 1142 1120 1142 0.98

6 8 0.00015 0.023 16.9 0.6 1 23 1148 1170 1148 1170 0.98

7 8 1.6e-05 0.0025 19.9 4.4 1 23 1176 1198 1176 1198 0.99

8 8 2.9e-06 0.00046 22.2 1.2 1 23 1204 1227 1204 1227 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.1e-06	0.00034	22.7	0.9	1	23	1008	1030	1008	1030	0.98
2	8	0.94	1.5e+02	4.9	6.4	1	23	1036	1058	1036	1058	0.98
3	8	3.1e-05	0.0049	19.0	3.2	1	23	1064	1086	1064	1086	0.99
4	8	5e-05	0.0079	18.3	2.2	1	20	1092	1111	1092	1114	0.93
5	8	2.2e-05	0.0036	19.4	6.0	1	23	1120	1142	1120	1142	0.98
6	8	0.00015	0.023	16.9	0.6	1	23	1148	1170	1148	1170	0.98
7	8	1.6e-05	0.0025	19.9	4.4	1	23	1176	1198	1176	1198	0.99
8	8	2.9e-06	0.00046	22.2	1.2	1	23	1204	1227	1204	1227	0.98

Sequence Information

Coding Sequence: ATGGAAATTAACACAGAGATTTCGGAGCGAAATCACTTAGAGAAAACTGTGAGGAAAATCTCTCTTCTGGGGCTTGAAACCTCAGTCGTACAAACGGAGGAAGGCGCAAGCCGGAACCCACCAAACCAGAACTATCTCTCTATAGTTCACCCAATCATGATGCACAAACGAACGGAAGTTAGTACCCCAGGTGGCAGCCTCAGCAAGAGGAAATCCACCCGTTTCGAGAGAACGGTCAGCAGGCCAGCGGAGTCTGGGGAGCCTGCAACATCATGTGAAGGAGAATCGGAGCTCCtaagcactaaattaaagccaaaATTAAGACACAAGGACATCCAGTACTTTGCCACTCTAAACGTAAACTCTCTGCTGAAGACTGGCAAACTGAAGACTCTAACAGATGTGTTGATACAACACAGAATCCAGATCATAGCCCTTCAGGAAACTAGATTCACCGATTCAAACGCCTTTGAGTCACAGGGCTACAGAATCTACAAGTCCAAACCAGGCAAGCGAGTGATACCTACCGTCCCACTGCTAGGCGTAGCTTTCGCCATAAATTTAAGAGTGATTGACTCAGTCGTGGAGTTCAGGAACATCTCGAGTAGACTCGCCACGTTAACCATCAAGTGCGCAAACAGGTGCTATACTCTGGTCAACGCGCACGCTCCCACCAATAAGGATAACAGAACTAATCCAGAAAAAGTAGAAGAATTCTGGGGTCTGCTAGAACATACTCTCAACGAGATCCCAGAGAAAGACACCACGATCTTACTTGGGGACTTCAACGCCCAAGTcggaagagaaaaatgcttcaagtcCACGGTGGGTAACTACCCGGCGCACTTGAGAACAAACACAAACGGAAAAAGGCTGATAGAGACATGCTTGCAGAACAAGCTCAAGCTAAAATCAACGTATTTCATGCATCTACCGAGAAAGCAGAAGACGTGGACATCACCCAACCCCACTCTGGGTGAATTTCAGATCGATCATGTTGCAATAGCAGCAAAGGCGGCAAAGGAAATCCTTAACGTCAAAGTGCTGAGAGGGGCAAACATTGACTCGGATCACTACCTCAGCAAAATCAAGATTAAGATGCGCCCGCTGGGAAAGAGAAAATTTGGTCAAAATCTAAAACCTAGAATGAACCCCATACTCCTgcagaaacatcaggaaaggttCAGGAATGGACTCCCCCGAGCAATTCCTCTTAAGGAATTAGAAGCTGCAATGACGACCAAGGCTCTAGAGATCGCACCACAGGAACGAAGGCCGAAACATGCTTGGTGGAATCCCGAATGCGATGAAGCCTTGAATAACAGAAAGAAGGCATGGAGAGACTGGAAAGCCCACCCGAAACCCTCTAAATTTGAGACCttcaaagaagaaagaaggaagacgGCCAAAACATTCAGGAACAGCCAAAGGAAATATCTCATGGAAAACTTGGCGTCATTGGAAGAATCcttcaagaaaaacaacaccaGAAACTTCTACCAAACATTCAAAAGATCTTTGACCAGATACTCTCCACCATCCCTAAATATCAGAAATCCCACAAGCGGCAAACTCGGGCATGGTGATGCAGAAAACGCTCAGAGCCTAGCGGAGTATTTTGAAACACTCCTCAACTGCCCGAAACCGTTAAAGAAATGGCCGACAAACGAGAGCAGACCCAACAGAGACTCCAGCCCACCTGACCTTCAAGAAATAAAGAGAATCATTCAGACGCTGAAGAACAACAAAGCTCCAGGAGAGGATGGCATTGTCGCAGAGCACTGGAAGATACTGGAAGACGAACAACTACAACCTCTCGTAGAAGAACTCAACACGGTATGGCGGACGTGCAAAATCCCACAGGAATGGAAGTCAGCTATTATCCATCCATTGCACAAGAAAGGTGACAGAACGGATGCGAACAACTACCGAGGAATTTCTCTCTTGCCAGTTACGTACAAGATTCTATCCAAGGCTCTCCTCAGCAGAGCAGAACCCCAACTCGATCCGCATCTAGGAGAATACCAGGCAGGCTTCAGGAAGGGAAGATCCTGTGCAGAACAGATCATCAACCTCAAGTTGATCATCGAAGGAAGGAAGCTGGCGAATAAGTCGTTGACGGTAGTTTTCGTCGACTTCATGAAAGCGTACGACTGCATCGATAGGGACACACTGATCGAGGTTCTACAGGAATTCGGCCTGgataacaaaaccagaaacatcTACCAACAAACCATCACAGACACGGAATCGAGGGTAAAATTCAGATCTGAACTCTCCAAACCATTCTGCATCAGAACAGGCGTTAGACAAGGCGACGGCATCTCTCCATTAATGTTCAACTGCGCACTGGAGAAAGTCATGCGCGAATGGAATAAGAAAGCTCCGAGAGGAGTTAAAGTTGGAACAGCGATAAAAGTCAACGCGTTAGCATTCGCAGACGACATCGCACTGATAGCAGACACGGTCCAAGACGCTGCAGAACAAgAAACAACTGAAGACTATGAAGATTCCATGATATCGAAGGAAGAGAAggctgaaaaagaagaagatagtcCTCCACAATGTGAAACACTGTTTATTGAGATGAAGAAAgAACCAATAAATGAGGAGTATTTAAAGGAATCTTACCGGGAGGAGGAAAAGAATGGAGAGAAAAAGGAagcaaaaaaagaagaagaagagggggAAGAGGCTCCATTGAATCTAAGTAGTGTAATGATTAAAGAAgaGAGACCAGGTGCTGTGAGGCGAAACAAAGAAGAGAATGTTGGGTTTGAGCCTTCAGAAACTGGTGCAAAGAGTACACAGCATAATCAGTGTGTAGATAATCCAGGAGTATTAAATACGCCAAGCGGATCTGTTACACCAAGTGGAATAAATTATCCAGGAATGTTCAGTACGCCTAGTGGATCATGTACACAGCAGAATATGTCCCATTATGCTATTCCTGATCTCAGTCTTGCCGATATGTATGCAGAGTTTAGAAATTTGAGTGATGACAATTCGAGTGATAAGCGGTATCAGTGCGATATTTGTAAAAAAGAATTCAAACAGAAATATGGTTTACAAAGACATGCTTTAATCCATTCGCAGGTAAAACCATACAAGTGTAATTTATGTATGCGAGAATTTAATCATAAAGGCAATTTTAATTGCCACATGTTAAACCATTCAGATATTAAACCGTACAAGTGCGAAACGTGTGCGAAGTTCTTTTGCCGGAAAGGGGACTTAAGTAAACATATGTTAATCCATGAAGGTATTAAGCCATTTAAGTGCAATGTGTGCCTGAAGGAATTTTCTCGTAGAAGTCATTTAAATGATCATATGCCAAGCCATTTAGGTTTGAAACCATTTAAATGTTCCATATGTCAAAAAGACTTTTCTCATAAGTGTAATTTAAATACACATATGTTGATCCATTCGGGTTCAAGACCTTATAAATGTGATGTctgtaaaaaagaattttttcaaaaagtcAATTTAGATTCTCATGTATTAATTCACACTGGTTTAAAACCGTTCAAATGCAATGTCTGTAATCGTGATTTTGCTCATAAATATAATCTAAGGACTCACTATTTAACTCACACTGGGGTAAAACCTTTTAAATGTGAAAATTGCCCTAAACAGTTTTCTCGTAGACCGGATCTGAAATCTCATCTTCGTGTCCGCCATAACATTACATCATAA
Protein Sequence: MEINTEISERNHLEKTVRKISLLGLETSVVQTEEGASRNPPNQNYLSIVHPIMMHKRTEVSTPGGSLSKRKSTRFERTVSRPAESGEPATSCEGESELLSTKLKPKLRHKDIQYFATLNVNSLLKTGKLKTLTDVLIQHRIQIIALQETRFTDSNAFESQGYRIYKSKPGKRVIPTVPLLGVAFAINLRVIDSVVEFRNISSRLATLTIKCANRCYTLVNAHAPTNKDNRTNPEKVEEFWGLLEHTLNEIPEKDTTILLGDFNAQVGREKCFKSTVGNYPAHLRTNTNGKRLIETCLQNKLKLKSTYFMHLPRKQKTWTSPNPTLGEFQIDHVAIAAKAAKEILNVKVLRGANIDSDHYLSKIKIKMRPLGKRKFGQNLKPRMNPILLQKHQERFRNGLPRAIPLKELEAAMTTKALEIAPQERRPKHAWWNPECDEALNNRKKAWRDWKAHPKPSKFETFKEERRKTAKTFRNSQRKYLMENLASLEESFKKNNTRNFYQTFKRSLTRYSPPSLNIRNPTSGKLGHGDAENAQSLAEYFETLLNCPKPLKKWPTNESRPNRDSSPPDLQEIKRIIQTLKNNKAPGEDGIVAEHWKILEDEQLQPLVEELNTVWRTCKIPQEWKSAIIHPLHKKGDRTDANNYRGISLLPVTYKILSKALLSRAEPQLDPHLGEYQAGFRKGRSCAEQIINLKLIIEGRKLANKSLTVVFVDFMKAYDCIDRDTLIEVLQEFGLDNKTRNIYQQTITDTESRVKFRSELSKPFCIRTGVRQGDGISPLMFNCALEKVMREWNKKAPRGVKVGTAIKVNALAFADDIALIADTVQDAAEQETTEDYEDSMISKEEKAEKEEDSPPQCETLFIEMKKEPINEEYLKESYREEEKNGEKKEAKKEEEEGEEAPLNLSSVMIKEERPGAVRRNKEENVGFEPSETGAKSTQHNQCVDNPGVLNTPSGSVTPSGINYPGMFSTPSGSCTQQNMSHYAIPDLSLADMYAEFRNLSDDNSSDKRYQCDICKKEFKQKYGLQRHALIHSQVKPYKCNLCMREFNHKGNFNCHMLNHSDIKPYKCETCAKFFCRKGDLSKHMLIHEGIKPFKCNVCLKEFSRRSHLNDHMPSHLGLKPFKCSICQKDFSHKCNLNTHMLIHSGSRPYKCDVCKKEFFQKVNLDSHVLIHTGLKPFKCNVCNRDFAHKYNLRTHYLTHTGVKPFKCENCPKQFSRRPDLKSHLRVRHNITS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -