Ccar029869.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Catonia carolina
Gene Symbol
Prdm9
Assembly
GCA_035578175.1
Location
JAQMRL010000003.1:111444755-111472183[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.27 43 6.6 2.8 1 23 585 608 585 608 0.89
2 8 4.3e-06 0.00069 21.7 2.4 1 23 656 678 656 678 0.98
3 8 5.3e-06 0.00085 21.4 1.1 1 23 684 706 684 706 0.99
4 8 0.00039 0.063 15.5 1.6 1 23 712 734 712 734 0.99
5 8 3.5e-06 0.00055 22.0 3.2 1 23 740 762 740 762 0.99
6 8 6.9e-06 0.0011 21.0 2.4 1 23 768 790 768 790 0.99
7 8 6.1e-06 0.00096 21.2 0.8 1 23 796 818 796 818 0.99
8 8 3.1e-06 0.00049 22.1 0.8 1 23 824 846 824 846 0.99

Sequence Information

Coding Sequence
ATGTCTGGACCAAAGTTTTGCTTGGATGTAGAAAGATATTTTTACGAAAGCGAGTGGAAATCTATGCCGGAATATGAACAAAACAGATGTAGAAATGTTCTTAGTAATTATAGCGCAATGCTCACTTTTGGCCTCAACCCAGATAAACCAGATTTCGTTAAACGATTTGAGGTGAGAAAAGAGAGTGAGAAGAAACGCAACGCCAAACAGATAAAAGCTTTAAAACGCCACAACTTATTTCTTCCACCTTTTAGTAgcactaaacaaaaacaacaatccCAAAAGAAAGAGCAAAGAGAAAATAAGACATCTGAAGCAGGGAGAGGTAGACAAATTAAGAAAGTGACAAACAATGACAGTCGAACTGCAAGTGCGATTCATAGCTCTGCAGAAACTAAACTGCCTAAACGGAAGGGAAGACAAAAACAGACCCAAGTGAAAAAAAAAGAACCAAAGGATGAGAATAAAAATGTGGAAAGTGATGAGAAATGTGGTAAAGTTGAAGAAGGTACGAAAGATGGAACTGGTGTGGTCATTGATGCCAGTAACAATGGAAACGGTGTGCAAGAGGAGGAAAACACCAAACTGGGTTATTCTGTGAAACGAGTAAATGCCATTGAAGAGTTTCTACTTGCTTCTTCTACTTGTTCTACTTTTCCTACTGTCGAATCTGAATTGACCTCTCTGTTGGATTCCCTTTCAATTGGAAATTGGGATGATGCAAGTAATGAGAGTGACTGCAGTACCAGTGCTGGCTGTGAAAAAGCAACCGAAGGTGATCATTTGCAATTTAGTGATGACACCGTCAAAGATGCCGTCTCACTGTACATGATAGTGGATGGGTTGTGTGATGCGATTGAGGAAGGTGGAGGAAAAGGGAAGAAAAAAGACaaggagaaagagaaagaggaAGAAAGGATGATGGGTCGTTGTGAAGTACAGCCAGAAGAGGTTGAAAAGAGAAGAGAAGTGGATTGTAGCTCATCATCTGCACTAGACCAACAAACAGGCAATGACGATCACCAAGAAGAAGCAGGGCACgtggaagagaaggaggaggagaaggagaaggagaaggaggaagaggaagagaagAGTGGTGATGTTTCAGTGAGAGTGTCAAGGGGGAGGTACCCTAAGAGGAAGAGCATTCCAGTGGTAGATTATAGAGAGCCAGATGATTTGAATGCAGACCACTTTATTTATTGTGATGACTGTGAGAGAGAGTGGATCAGCCACTGCGATGTCCATGGACCTCTCAACAACATTGAAGACTCTCAGgTTCCAATAGGACCGTTAGATGACAACATGGAACGGGCAATTGAGACACTACCAGATGCGCTGAAAGTAGCCCAGAGTAAAATACCACATGCATATTACGGAGTGTGGACTACAAAGGTTATACCGAAGAGGATAAGATTCGGTCCGTATGAAGGGAAAATAGTCTTCACTGAACCAAGGGACACCAGATATTGTTGGCAGATAGCGAAAGAAGGCAAATGTGGTCACCTGGTGGATGGAAACGATAAGAACACGAGCAACTGGATGAGATATGTGAACTGCGCACGTTTCAAAGAAGAACTCAATCTGTTTGCGTACCAGTACCACggtaaaatttattacagaactTTCAAGGACATCGCACCGCATCAAGAACTGCTTGTGTGGTATGGCAAAGAATACGCACAGAAACTGGGCATCACTGCCAAACTCTTCAATAATCCTGATATGAGCATTATTCAGAATGTTGCGTTTTATTGTGTAAAGTGCAACAGAGTGTTTACATCTCCAATATATCGTGACGAACATTATGAGAGGTGTCATCTAAATTCTTGTAAAAGAGTGTACAGCATTACTGAATCAACTGAGAATGGTAActgtaacaacaacaacaacaataagtaCAGTGATACTCTGAAGAGGAGGGGTAATGGGGAGGATAAGGTGAAGTGTAATATCAAGTTACACAAGTGTAATCTGTGTGATTATGCTAGTACTAACAAAGGTAATTTATCAAGACATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTAGTACTGAGAAAAGTAATTTATCAACCCATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCCAGTACTTATAGCAATCGTTTATCAACCCATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTTGTACTCAGAGCAGTAGTTTATCAACCCATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTTGTATTCAGAGCAGTAGTTTATCAACCCATATGAGAATGCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTAGTACTGAGAAAAGTAATTTATCAACCCATATGAGAATCCATACAGGTGAAAAACCGTATAAATGTAATCTGTGTGATTATGCTAGTACTCAGAACGGTAGTTTATCAAGACATATGAGAATGCATACAGGTGAAAAACTGGATAAAAgtaatttatga
Protein Sequence
MSGPKFCLDVERYFYESEWKSMPEYEQNRCRNVLSNYSAMLTFGLNPDKPDFVKRFEVRKESEKKRNAKQIKALKRHNLFLPPFSSTKQKQQSQKKEQRENKTSEAGRGRQIKKVTNNDSRTASAIHSSAETKLPKRKGRQKQTQVKKKEPKDENKNVESDEKCGKVEEGTKDGTGVVIDASNNGNGVQEEENTKLGYSVKRVNAIEEFLLASSTCSTFPTVESELTSLLDSLSIGNWDDASNESDCSTSAGCEKATEGDHLQFSDDTVKDAVSLYMIVDGLCDAIEEGGGKGKKKDKEKEKEEERMMGRCEVQPEEVEKRREVDCSSSSALDQQTGNDDHQEEAGHVEEKEEEKEKEKEEEEEKSGDVSVRVSRGRYPKRKSIPVVDYREPDDLNADHFIYCDDCEREWISHCDVHGPLNNIEDSQVPIGPLDDNMERAIETLPDALKVAQSKIPHAYYGVWTTKVIPKRIRFGPYEGKIVFTEPRDTRYCWQIAKEGKCGHLVDGNDKNTSNWMRYVNCARFKEELNLFAYQYHGKIYYRTFKDIAPHQELLVWYGKEYAQKLGITAKLFNNPDMSIIQNVAFYCVKCNRVFTSPIYRDEHYERCHLNSCKRVYSITESTENGNCNNNNNNKYSDTLKRRGNGEDKVKCNIKLHKCNLCDYASTNKGNLSRHMRMHTGEKPYKCNLCDYASTEKSNLSTHMRMHTGEKPYKCNLCDYASTYSNRLSTHMRMHTGEKPYKCNLCDYACTQSSSLSTHMRMHTGEKPYKCNLCDYACIQSSSLSTHMRMHTGEKPYKCNLCDYASTEKSNLSTHMRIHTGEKPYKCNLCDYASTQNGSLSRHMRMHTGEKLDKSNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00283951;
90% Identity
iTF_00283951;
80% Identity
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