Ccar011729.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000001.1:205273892-205305258[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.3e-07 6.9e-05 24.8 3.0 2 23 110 132 109 132 0.97 2 12 0.1 16 7.9 0.9 3 22 140 156 138 158 0.75 3 12 0.24 38 6.7 0.6 3 23 486 507 484 507 0.94 4 12 1.3e-05 0.0021 20.1 0.9 1 23 513 536 513 536 0.94 5 12 0.01 1.6 11.1 1.6 1 23 543 566 543 566 0.95 6 12 0.00021 0.033 16.4 1.3 2 23 574 595 573 595 0.95 7 12 9.1e-05 0.014 17.5 5.7 2 23 603 625 602 625 0.97 8 12 0.16 26 7.3 0.5 2 23 631 650 630 650 0.77 9 12 0.015 2.4 10.5 2.6 3 23 657 678 656 678 0.97 10 12 9.6e-06 0.0015 20.6 0.4 1 23 684 706 684 706 0.99 11 12 1.9e-05 0.003 19.6 0.9 1 23 712 734 712 734 0.99 12 12 0.22 35 6.9 0.6 1 20 740 759 740 761 0.78
Sequence Information
- Coding Sequence
- ATGGTGGATATGTTTAAGGTGTTGGAGATGCCAAATACATGCTCAGCTGTGATAGTGAGTAAACATAACgttagtaagaagaagaaaaactcaaAACCGGCTTTAGACGTTTCTGGTCGGGAATTGGAACCAGAGGTGAACCAGTTTGTCAATCCATTGATTGGTAGTTATGATGCATTATCTAATAAAGAACATACTGTGGGTATGTGGAGATTAAATGTATCAGCAGAAGAAGAACCAAATGTTATCACGGGTGATTTGCGTGaaatttttgttagaaaaaatGAAGAATCTGAAGTTGTTCATGCTGATAGTAGTGATTACGTTAAATGTCCTCAGTGCAATAAAGTATTTAAACACAACTCTTTGCTACGGAAACATATTAAACGATTACATACAATCAACATAATAGTTAATTGTCACATATGTGGTAAAAGTGTTAAAAACTTATCAAAACATATGTATTTGGTTCATGAAGAAAGAGCAGTTAAGTGTGAtGTGAACCAGTTTTTCAATCCAGTAATTGATAATTATCATGCATTGTCTAATAAAGGACATACTCTTGATATATGGACCTCAAATGTATCGGGAGAAGAAGAGACAGAAATAATCACGAGTGATTTGTGTGAAGTAAAtttagaagaaaaagaagatccTTTAAAAGATGAAAGCGATCCTCATAAAACTTTGAGCAAACCTGAAACATGTGATGTGAACCAGTTTTCCCATCCGGTGATTGGTAGTTCTCATGCATTGTCTAATAAAGGACATACTCTGGGTATATGGGCATCAAATGTATCAGAAGAAGAAGAGAATAAAGATGTTATCACAGGTGATTTGCATGAAGTAAATTACGGAGAGACAGAAGATCATTTAAAACAAGAAAGGAATCCTCGTAAAATTTTGCGTAAACCTGAAACGTGCGACGTGAACCGGTTTTTCAATCCAGTGATTGGTAGTTATCATGCATTGTCTAAAAATGGACATACTCTGAGTATATGGACATCAAATGTATCAGCTGAAGAAGAGAATAAAGTTATCACGGGTGATTTGCATCAAGTAAATTATGAAGCGAATGAAGATCAATTAAAACATGAAAACGATCCTCAAAAAATTTTGCATAAACCTGAAACATGCGATGTGAACCAGTTTTTCAATCCAGTGATTGATAGTTATCAAACATTGTCTAATAAAGGACATACTCTGGGTATACGGACATCAAACGTATCAGCAGAAGAAACGACAAACATTATCACAGGTGATTTGTGTGAAGTAATTTGTGAAGAGAACAAAGATCAATTAAAACATGAAAGTGATCCTCAAAATATTTTGCGTAAACCTGAAACGTGCGATGTGAACCAGTTTAGCCGAATCAAAATTCCTGAGTGCATTGTAAATACTTTTGCAATCGATGACGAAATAGTTGTAGGCGAAGAAAAGATAAATATAATAAACTGTAAATCATGTGCGAGTGCGTTTAAAACTATGGAAGAATTAAAAAGTCATAAAACAACTGTTCATCCTAGATCAATAAAACATGTTTGCAATATTTGTCAGAAATCATTTGGAATATCTTCTAATTTAAAACGCCATATAACATTAGTACATTCAGATGATGCTGAATATTTTCCTTGTGAATTTTGTAGTAAGTTATTCAGAAGTAAATATTCAATGGGTAGGCATGTTATTAAATTCCATTCAAATACACCAAAATCGATTGAATGTGATcagtgtaataaaaaatttactactaCGACAGAATTGAATCAACACAAATATGTACATTCTAAAAGCAGTGACCAGAAGAAATGTTCTCAATGTAATAAAGTATTTAAACATCTCGTATCATTGCAGCATCATTTACGTAAAGTACATTCAATGGCATCTAGTGTATGCCACATATGTGGtaaatctgttaaatatttaaatgaacatATGGCTGTGAATCATGAAAACGTGGAATCTGCTTGTGATATCTGTTCGAAaacatttaaatgtataaaacttttacaaaatcaTACGAGGACCGTTCATGCTGAAATAAGACGATATCAATGCGATATATGTGGCAGTGGTTTCAAATCAAATTATGTGCTTGTAAATCATATGAAAACACATAGTGACGAAAGAAATTATAAGTGTGACATTTGTGAACTAACATTTAAATATGAAGCGGTTTTAAAAACACATCAACGAACGCATAACAGTGATTTACCGTATGAATGCGATACATGTGGAGAAAAATTTAAATGGAAACAAACACGTGATAAAcatattaataaatgtttttataaaatcgaATAA
- Protein Sequence
- MVDMFKVLEMPNTCSAVIVSKHNVSKKKKNSKPALDVSGRELEPEVNQFVNPLIGSYDALSNKEHTVGMWRLNVSAEEEPNVITGDLREIFVRKNEESEVVHADSSDYVKCPQCNKVFKHNSLLRKHIKRLHTINIIVNCHICGKSVKNLSKHMYLVHEERAVKCDVNQFFNPVIDNYHALSNKGHTLDIWTSNVSGEEETEIITSDLCEVNLEEKEDPLKDESDPHKTLSKPETCDVNQFSHPVIGSSHALSNKGHTLGIWASNVSEEEENKDVITGDLHEVNYGETEDHLKQERNPRKILRKPETCDVNRFFNPVIGSYHALSKNGHTLSIWTSNVSAEEENKVITGDLHQVNYEANEDQLKHENDPQKILHKPETCDVNQFFNPVIDSYQTLSNKGHTLGIRTSNVSAEETTNIITGDLCEVICEENKDQLKHESDPQNILRKPETCDVNQFSRIKIPECIVNTFAIDDEIVVGEEKINIINCKSCASAFKTMEELKSHKTTVHPRSIKHVCNICQKSFGISSNLKRHITLVHSDDAEYFPCEFCSKLFRSKYSMGRHVIKFHSNTPKSIECDQCNKKFTTTTELNQHKYVHSKSSDQKKCSQCNKVFKHLVSLQHHLRKVHSMASSVCHICGKSVKYLNEHMAVNHENVESACDICSKTFKCIKLLQNHTRTVHAEIRRYQCDICGSGFKSNYVLVNHMKTHSDERNYKCDICELTFKYEAVLKTHQRTHNSDLPYECDTCGEKFKWKQTRDKHINKCFYKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -