Ccar054699.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- RREB1
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000018.1:2392988-2413445[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00045 0.072 15.3 0.7 1 23 844 866 844 866 0.98 2 14 5.5e-05 0.0087 18.2 0.2 1 23 887 909 887 909 0.98 3 14 3.7e-07 5.9e-05 25.0 3.2 1 23 915 937 915 937 0.99 4 14 0.0069 1.1 11.6 0.1 1 21 1133 1153 1133 1154 0.96 5 14 0.18 29 7.1 0.1 1 23 1304 1326 1304 1326 0.97 6 14 1.4e-05 0.0022 20.1 2.2 1 23 1338 1360 1338 1360 0.99 7 14 0.0087 1.4 11.3 3.4 1 23 1366 1389 1366 1389 0.97 8 14 0.0017 0.26 13.5 2.8 1 23 1798 1821 1798 1821 0.96 9 14 0.002 0.31 13.3 0.5 2 23 2065 2086 2064 2086 0.97 10 14 1.2 1.9e+02 4.5 7.3 1 23 2092 2115 2092 2115 0.96 11 14 0.0082 1.3 11.4 1.4 1 20 2180 2200 2180 2201 0.96 12 14 0.063 10 8.6 1.5 1 23 2295 2318 2295 2318 0.96 13 14 0.0077 1.2 11.5 0.5 3 23 2368 2388 2366 2388 0.96 14 14 0.018 2.8 10.3 5.9 1 23 2394 2416 2394 2416 0.98
Sequence Information
- Coding Sequence
- ATGGGTGTCCATAGAGTGGTAATTCTGGGAGATTTTAATATACCAAATATCGACTGGAGAAGCAGATGTCTTTCTCATAATATTCACTGTGCGGCCAAGAAGAAGGCGAATATTATGTTCAGTTTCCTTGATGATATGAACCTGCATCAGTACAACCATGTCGTCCCAGTGCGTGGCAAATCGGTCCTCGATTTAGCTATGGCCAATTGTTCGATTGAAGTAGCTGCTGTGACTGACTGCCTGGTTCGCCCGGATGACCCGCATGACCCGCTTCTTATCACTGTGCCTGATGTTTTGAGCCTGGAACTGCGCAGGCCCAACATTTGTCGTGATTACCGGAGGGCTGATTTCCTGGGTCTGTACCATGCTGTCAAAAATACTGACTGGGGTCCGGTGTATGGCGCGTCTGATTCTTCTGAGGCGGCGGAGAGGCTGACAGGAGTGTTGAGCGGTGCGGTGGAGGCCTTCGTACCGTGCTCAACCCGTAGGAGTGGTGGGTTTCCCGCTTGGTTCTCAGGGGAATTGGTTGTTTGTCTCAAGACCAAGAAGAAATGGCACAAGAAATTTAAGAAGACATCCAAGGGGGAGCATTATCGTATATTTGCCGATCTCAGGAAGAGAGCAAAAGTACTGTTGGCTAGAGATCGGGTTGCTCGTGCCCATAGAGCCGAGGATGAACTACGTCATAAACCGTCTGGATTTTTCAAGTATGTTAAATCCTTCATGACTGATGCGAAGTATGTGAGACCAATCAAGATCGGGGACGAATTAATAACTGAGGCCGGACCCCTGGCCGAGCGATTTGGGGAGTACTTTCACTCTGTTTACCAGACGTCGACTGGGCGGATGAAGTTGGATAGTGATGTTGGAACGAAACATCATGATGGTGATGCAACTATAAATGTACCAATAGTATCCGTAGATGACGTTCAGCGTGCTATTGGGAAGTTGAATGCAAGAGCTGCAGTTGGTGCCGATGGCTTGTCTCCGATTGTGATAAAGGGTGTTAGTGAGCTTCTTTCGCCTGTAATTTGTTGGGTTCTTAACTACAGTCTTGAGACGGGTGTGTTCCCGCAGTCTTGGAAGATGGCTATTGTTACGCCCATACCAAAAAAGGGTGATCCGCACGATATAGGAAACTATCGTCCAATATCAGTTCTGGGGGTTCTGCCTAAAATTTTTGAGATAATAATGCACGACTATCTGTTCAAGTCCCTCAAGGCATCTATCATTCAACAGCAACATGGCTTTATGAGTGGTAGGTCGACTACCACCAATTTAGTTGATATGCTTAACTTCGTTGCGCCTATTGTACATAACCAAGGGCAGGTCGATACTATCTACTTCGATTTCCGCAAAGCTTTTGACAAGGTTCCTCATCAACTTATAGTTTCTAAACTTAGGGGATACGGGGTTACTGGGCAGCTGCTGAGATGGATAACTTCGTACTTGCGGGGGCGCTCATTTCGTGTGAAGATTTCTGGGGTGCTATCTAGAGAGTTTGATGTCACCTCTGGGGTGCCTCAGGGCTCCAACCTTGGACcgctcttttttattatttttgtaaacgatATACACAGGGGTATTACTTCGGAGTTTAAAATGTACGCAGATGACCTCAAGATTTACAGATCGATAAAAAATGAGAATGACAGGCAGATGCTGCAGGAAGATATTGACCGCGTTGTTCAATGGTCATCTGATAATGCTATGCCGTTAAATGTTGAGAAAACTGCAGTCATTACGTACTCCAGAAAAACATTAGTTAAAAAGTATGTATATTCTGCCCTTGGAAGTTCGCTTCAAAGGGTTGATACGATATCTGATCTAGGGGTAGTAATGGACTCAGGGTTGCACTTTAATAAGAACGTCGAGAAAGTTACGGCGAAGGCTCGAAGAAATCTTGGCTTGGTGAAATGGATCAGCCGAAATTTTAGAAACCCTGCAAGTATCGTAAAACTTTATCAAGTTAACGTCCGCCCCATTTTAGAATACTGTTCCGTGGTTTGGGGCAACGATAGGATTACCACTACCAACCCTATTGAAagtgttcaaaaaaatttcttgagGTACTTGGTGTACAGAAAGTTTTCTGACATATACACTTATGAGGGTTTATGTAAATCATGGAAATTGCACCCTCTGAAACCTTGCAATTTAGTGAACAAGGAACAACATAACCTaagtacaataaaaaatgaaaataagacTGTAGAGTATGATAATAATAACAGTCATTTGACCAAAGAAGACAATGATTTAAAAATTACCAAAGATCAAAATAGAaagaataaaagtaatttaataccAAAGAATAATGAAGAGAATATAGTAAAGAATTCATGCGACACAGGTGATTACAATAAAGATGCAGATAATtatgaaaataagattgaagtaACAAAAAAAGAAACTGCAGATGAAAGAACATCTCCTGCATCATCAATCGATaatACTACATTCGATGGAGCAAATCAGAGTAGATCTGAAGGAAATAGTACCAATGGTGAAGACGAATCAGAGATGAGATTCATCTGCCCAATTTGTGATATGATGTTAAACTCGCAACACGAGTTTACATTACATATTCGATCTCATAATAATGATATTAGTGCCTTAGAAGAATCACAAGCACAATTAGCTGCAATCTGTAAAGGATTTACTTGTAGAATCTGTGGAAAAGTATTGAGTTCATCAAGCTCATTAGATAGACACGTACTGGTCCACTCAGGTGAGCGACCATTTAAATGCAAAATTTGTGGTGTAAGTTTTACAACAAACGGCAACATGCATAGACACATGAGAACTCACCCGACAAATCAATCTGGAAAAAATCATGATGGTGGTTACAATTCTGAAAGTGATGGAAGCTCTGATAGTTACGGAAGTTCAAAAAAGAATCCTACATCTCCATTGGCATTAAAACGAAAGAAAACTTCCAGAACTACTgctgaatttaataataataatatagaactGTCACCTAGATCTTTATCTGATTTAACTGGAAAACGTAAAAGTGATTCGCAAGATGATAGTGGAAATATTTCTCGAAGAAAGATAAAGAACGAAGAAAAAAGCAATAGATTTAAATGTCCTGTCTGTGAACGAGAAGATTTTCTTTCGCTAAATCTGTTAGAAACTCACTTAGAAGAGAGCCATCCAGAGTACAAAGCTCGTTGTGAACCTTGTAATTTGATCTTTAAAAATCATAGAGTATTAAATCTTCATCGTTTCATGGTACACCCTGACCAAGAACAAATGATGACTAGTCCTGGTGGTACAGTGGGATTTAAAGACCTAACATTTGTTGACTTTTCTAGTGAAAAATTTCCATATATTGCTCGAATGGTTTGTGAACAAAGTCTTCATCGTGCCAGTAGTGTTTACCATAAATTTCAGTGTGATCGTTGTGAAAGAGCTTTCCCTCTTGCTTCTGCATTAAAGATACATCAGCAGAATTGTTGTTATGCTTCGTCTGGTGAAGCAACACATGAATTGTCATCTAGTGACAATGAGGGTCCTACAGATCTCAGTCGACCTCATAATTCTGTGTCAGAAAGTTCAGATGACGTAGAGGATGAAAAAAGACGCGAGACATTTTTTGCTAGATTAGATCTTCAGAATAAATCATCCCCTAGTTCACCAGAATATGATGATAGAAGAAGTAAAAATGGCAATTTCCAGAATGATGTTTACTTCAACGCTAGTACTGAAGGTAAAGATTTAGCTGACATTCAAAGTATTATTTCTGTAACATCAACAGGCGGGCTTATACCTGATTTATCGAAAAGTCCTCAGCCATCAAGCATTGAAGTTACTCCACCTGACTCTGGCTCCAGAGGTGAAGAGGAAGAGCAGCAAGATTGTTTTGCTGCTGAATTCAGAAAAATGAAGTTACGTGGAGAATTTCCTTGTAGACTGTGTACTGCAATTTTTCCAAATCTTCGTGCTTTGAAAGGTCATAATCGTGTACATCTGTCAGCAAGTCCAGGAGGAAATATGGGCCCTTATCGCTGCAACATGTGTCCACATTTTAGCTCAGATAAATCAGCTTTAATTCGCCATATGCGTACACACAATGGTGACAGACCATATGAGTGCAGTTTGTGTCGATACGCTTTTACAACGAAAGCTAACTGTGAACGACATCTTAGAAATCGCCATGCTAAAATGTCTCGCGAAGATGTTAAGAAATCTATTATTTATCATCCTTCAGAAGATCCAACAAATGATATAAATGCAGTTGCAACGACTCCAGTGCCAACAACTAGAGATGATGTTAAGCGATCACTCTTTTCTGATAACAGTAAAATTATAAGAGACAATGAAACCAGTATTACAAATCCTATTGCtcaaaaaattattgaacaaccagcaaaaataaTGAGAAGTGAACTAAAACAAGTTCCAAATCTTGTGCTTTCACAAGACAGTAATTTACGAAATATCCTTGTCCCGTCTGAAAAAACTACTTTCAGACGAAAAAGTTTAGATGTGGGTACGATGACATCAGATGAAGAGCTAGTTAATGTGGTTGACAAAAAACCAACAAATCAATTAGATGCACCATTAGATCTCAGTATGGATGCTCTGGATTTGAGTCGAAAACGAAACAAAGAGAAAACTGAGCCTAAAGAGGAACAGATAATAGTTGATGATTTAGAACCACAAGACCTTTCAAAGAAACCAAAGAAATTGACTGATAAAGTAGCAATAACCAATGACAAACCAAAGATATACAATCAGGATTTAAATTTGCTCACTCCTCCACCGGTTCAGAATTATGAAGTTCAATCAAAACCACAAATCACATTACCAAAATTAGATTTGTCACAGTTTTACTCAGGCAACACTAACATTAATCCATCATTTTTCCTAGGAAATAATCCTGCGTTTGGTGCATTTTCTCCCACTCCTGCAGCCTTTCCTCCTTACTTTTTGACTCCACCTCCTCATGTCTTATTCCAAAGAAATCCTACCCAAGAACTCGCTGAGATGAGGGAACATTTGCAAAAAGAATTTATTCGAGGACTGCAACTTACTTCTGGTGGATCACTTGTTTTAGATCAATTAGTCCATCAACAGCAATTAACAATGAGTGCTGCCGATAGAGTGAAATCTTTGCACAGTCAAGCATTCGCAGAATATAATAGAAGAATGGAAGCATCATCTGTTACGAGTGATATACCATCAAAACCagaaagtaaattaattacaCCTGTCCCATCAGATCAGCCAGACAAAATAAAACACACAGTTCAAAAACCAGTTGAGAAATTGGCATCTGCTCCTCGTCatgaatcatcatcatcatcagttaAAATGGTGATAAAAAATGGTGTTTTAATTCCAAAACAAAAGCAAAGACGTTATCGTACCGAACGACCATTTTCATGTGAACATTGTTCAGCTAGATTTACTTTGCGATCAAATATGGAAAGGCATATAAAACAGCAGCATCCACAGTATTGGACACAAAGACAGAGATCAGGTCATGTAAGTGGGCGACGAAGTCACAGTTCAAAATCATTTTCTTTACAACCTACTGGCAGTTTGAATAGTCAATTGTCCTATTTTCCTCATTTGGCTGTTCACTCAGATGAACATACAAGTACTGGAAGTAGGTGCTCAACACCTCAAGATGATATTTTCAAAAAGGATGGACCAAATATAAGTCAGGATCAAGTATCACCATCTAGCTCAGAAGCAAACAAGACACTCATATCTGATGAAGTGAAACATGCTATTGCACAACAATTAAAATCAAAACATATTGTTGGTGGTGAAAAGCATGATGATGCAATAAAGTCAGAGCCAGATGATGATATGGAGGATGAGGAGGGTGAAGAACAATTGGTTATCGATGAGGAAGCTAAGGAAGATGATGttaaagaaaattcaaataaaaagttAGCATCCCATAAAGAAGAAGGTGTAGATTTAGCAAGCGTGTCACGCCTACTGGACAATGCTTCAACACAgacatttaaagaatattttcacAGTGAAGAAGATCAAGGGGGTTGTGATAATagtgaagaagatgaagaaggacTTGTTGCTGGGAGTACAAGCGAAGGAAATAATTCAGGCAGTGATGAAAATAGATCTGAGTCTGACACGGCAGGTGGTAGTGGGCGTCAaggagaaaaaaagaaaagtgcCTATTCACTTGCCCCCAATCGAGTATCATGTCCGTATTGCTTCAGGAAATTTCCTTGGTCATCATCATTAAGGCGACATGTCCTCACACATACTGGACAAAAACCATTTAAATGTTCTCATTGCTCATTGTTATTTACTACAAAGTCAAACTGTGATCGACATTTATTAAGAAAACATGgtggaaataataataataataataataataataatggtagtagcagtactaataacaataataatagttttatcaATAGCAACGACAACAAACTCAGTAGTGATAATAGTAATGTTGAAAACTCAGAAACACAAGATTATATAAAAAagcaaaattcaaattatactaTGAGAAATGTACCAGAACGACCTTACAAATGTAAATATTGTCCTAGTTCAACATTTTCAacattaagtaatttaaaaaaacatttatcttgTAAACATTTAGGTCGTATGTCATCCGATGAAAGTAAAAAACATCAAGACGGTAATCAAAGTGGTTATGAAAGTCATGGAAGCGCATGTGATGATCCAATATCGGACATACATTCAagtgaaaatattaaaagtataaaTCCTATGGATTTGACATCAGTACAGTCAAATCAAATGAATGAGACTGTTAAAACATCAGGAATATCAACAATACCACATGATTCACAAGCATTTCCATCTTCTGTCATGATGCAGACAAGTATATCATCAGATCTTCCATTTAAATGTCATCTGTGTGACAGCAGCTTTTCCGAACGACAAGAAGCACTTGATCACATTCGAGATTTCCATTCATCAGAATATCAACTGCTTGTATCCAAAGGAGCATTAGATGTCAGTAATGCTGATGAAAATCCAGGACAAGATGATTGTACTGGAGAAGAAAATCTGGAACAATTGAGAGGGAAATTTCCAGATTATGCTAATAGAAAGGTCATGTGTGCATTCTGTCTTCGTCGGTTTTGGTCAGCTGAAGATCTGCGTCGTCACATGAGAACACATACAGGGGAGCGGCCATTTTCTTGTGATATCTGCCGTAGAAGGTTCACGTTAAAACATAGCATGCTCAGACATCGAAAGAAACATTCGTTGACATCGACTACTTCTCCGTTAGCAAGTGATGAAGAACCAATGAatattaataacaacaataacattgTTTCTTCTTCAAAAATGTGCAACGAAGAGTCAGATCTCATCAGTAATTTATTAGGCATTCATGATCGATCAATTGTAGATAAAATGCTTATTTCAAAGTCAGCAGAAGATGCTGCAAAGTTACTTGGAGTGCAAaagtag
- Protein Sequence
- MGVHRVVILGDFNIPNIDWRSRCLSHNIHCAAKKKANIMFSFLDDMNLHQYNHVVPVRGKSVLDLAMANCSIEVAAVTDCLVRPDDPHDPLLITVPDVLSLELRRPNICRDYRRADFLGLYHAVKNTDWGPVYGASDSSEAAERLTGVLSGAVEAFVPCSTRRSGGFPAWFSGELVVCLKTKKKWHKKFKKTSKGEHYRIFADLRKRAKVLLARDRVARAHRAEDELRHKPSGFFKYVKSFMTDAKYVRPIKIGDELITEAGPLAERFGEYFHSVYQTSTGRMKLDSDVGTKHHDGDATINVPIVSVDDVQRAIGKLNARAAVGADGLSPIVIKGVSELLSPVICWVLNYSLETGVFPQSWKMAIVTPIPKKGDPHDIGNYRPISVLGVLPKIFEIIMHDYLFKSLKASIIQQQHGFMSGRSTTTNLVDMLNFVAPIVHNQGQVDTIYFDFRKAFDKVPHQLIVSKLRGYGVTGQLLRWITSYLRGRSFRVKISGVLSREFDVTSGVPQGSNLGPLFFIIFVNDIHRGITSEFKMYADDLKIYRSIKNENDRQMLQEDIDRVVQWSSDNAMPLNVEKTAVITYSRKTLVKKYVYSALGSSLQRVDTISDLGVVMDSGLHFNKNVEKVTAKARRNLGLVKWISRNFRNPASIVKLYQVNVRPILEYCSVVWGNDRITTTNPIESVQKNFLRYLVYRKFSDIYTYEGLCKSWKLHPLKPCNLVNKEQHNLSTIKNENKTVEYDNNNSHLTKEDNDLKITKDQNRKNKSNLIPKNNEENIVKNSCDTGDYNKDADNYENKIEVTKKETADERTSPASSIDNTTFDGANQSRSEGNSTNGEDESEMRFICPICDMMLNSQHEFTLHIRSHNNDISALEESQAQLAAICKGFTCRICGKVLSSSSSLDRHVLVHSGERPFKCKICGVSFTTNGNMHRHMRTHPTNQSGKNHDGGYNSESDGSSDSYGSSKKNPTSPLALKRKKTSRTTAEFNNNNIELSPRSLSDLTGKRKSDSQDDSGNISRRKIKNEEKSNRFKCPVCEREDFLSLNLLETHLEESHPEYKARCEPCNLIFKNHRVLNLHRFMVHPDQEQMMTSPGGTVGFKDLTFVDFSSEKFPYIARMVCEQSLHRASSVYHKFQCDRCERAFPLASALKIHQQNCCYASSGEATHELSSSDNEGPTDLSRPHNSVSESSDDVEDEKRRETFFARLDLQNKSSPSSPEYDDRRSKNGNFQNDVYFNASTEGKDLADIQSIISVTSTGGLIPDLSKSPQPSSIEVTPPDSGSRGEEEEQQDCFAAEFRKMKLRGEFPCRLCTAIFPNLRALKGHNRVHLSASPGGNMGPYRCNMCPHFSSDKSALIRHMRTHNGDRPYECSLCRYAFTTKANCERHLRNRHAKMSREDVKKSIIYHPSEDPTNDINAVATTPVPTTRDDVKRSLFSDNSKIIRDNETSITNPIAQKIIEQPAKIMRSELKQVPNLVLSQDSNLRNILVPSEKTTFRRKSLDVGTMTSDEELVNVVDKKPTNQLDAPLDLSMDALDLSRKRNKEKTEPKEEQIIVDDLEPQDLSKKPKKLTDKVAITNDKPKIYNQDLNLLTPPPVQNYEVQSKPQITLPKLDLSQFYSGNTNINPSFFLGNNPAFGAFSPTPAAFPPYFLTPPPHVLFQRNPTQELAEMREHLQKEFIRGLQLTSGGSLVLDQLVHQQQLTMSAADRVKSLHSQAFAEYNRRMEASSVTSDIPSKPESKLITPVPSDQPDKIKHTVQKPVEKLASAPRHESSSSSVKMVIKNGVLIPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQYWTQRQRSGHVSGRRSHSSKSFSLQPTGSLNSQLSYFPHLAVHSDEHTSTGSRCSTPQDDIFKKDGPNISQDQVSPSSSEANKTLISDEVKHAIAQQLKSKHIVGGEKHDDAIKSEPDDDMEDEEGEEQLVIDEEAKEDDVKENSNKKLASHKEEGVDLASVSRLLDNASTQTFKEYFHSEEDQGGCDNSEEDEEGLVAGSTSEGNNSGSDENRSESDTAGGSGRQGEKKKSAYSLAPNRVSCPYCFRKFPWSSSLRRHVLTHTGQKPFKCSHCSLLFTTKSNCDRHLLRKHGGNNNNNNNNNNGSSSTNNNNNSFINSNDNKLSSDNSNVENSETQDYIKKQNSNYTMRNVPERPYKCKYCPSSTFSTLSNLKKHLSCKHLGRMSSDESKKHQDGNQSGYESHGSACDDPISDIHSSENIKSINPMDLTSVQSNQMNETVKTSGISTIPHDSQAFPSSVMMQTSISSDLPFKCHLCDSSFSERQEALDHIRDFHSSEYQLLVSKGALDVSNADENPGQDDCTGEENLEQLRGKFPDYANRKVMCAFCLRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHSLTSTTSPLASDEEPMNINNNNNIVSSSKMCNEESDLISNLLGIHDRSIVDKMLISKSAEDAAKLLGVQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -