Ccar053236.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000015.1:13718182-13732591[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00013 0.02 17.1 3.1 1 23 154 176 154 176 0.97 2 11 2.2e-05 0.0035 19.5 1.8 1 23 181 204 181 204 0.97 3 11 0.001 0.16 14.2 2.2 1 23 210 232 210 232 0.97 4 11 0.6 95 5.5 3.4 1 23 237 259 237 262 0.67 5 11 0.00019 0.03 16.5 2.1 1 23 265 288 265 288 0.95 6 11 1.3e-06 0.00021 23.3 2.0 1 23 293 315 293 315 0.98 7 11 1.2e-05 0.0019 20.3 1.4 1 23 321 343 321 343 0.98 8 11 1.7e-05 0.0027 19.8 3.0 1 20 349 368 349 371 0.92 9 11 0.37 58 6.2 1.8 2 20 381 400 377 402 0.73 10 11 3.3e-06 0.00053 22.0 1.4 1 23 405 427 405 427 0.99 11 11 1.9e-05 0.0031 19.6 1.4 1 23 433 455 433 455 0.98
Sequence Information
- Coding Sequence
- ATGGAATTATTTAAACTTCAACAGTTTGGTGAACGGTTTGAATCAAAGATGAAAACTGATATTACGCATACAGAAATTGACCTGAAAGATGAGCATCTAGACTTGGACACTGGTGACATATCTCAGACTGATCCAAATGCACTGAATTTTGAGTTTGTCAACATGAAACAGGAAATTGGAGAGGAAGATGAAATTAGCCCGATTGAAGACAAGAGCTGGTCAGCTGATCCTTGGGCTAATAACTGCATCAAAAAAGAAAAGGATGAAGGTGGTTCCGAAGAAGTCGATACTAATATGGACAAATCTAGCAAAGAACTTTTGTCCGTGGATAGAGATTGCAGTTATTTTAGTGGTGATAAAGAAGGTGGATGTGTTGAAACAGATTGCACCACCAGAAATGGTGATAGTGATAAAAGTATCACTACGAGTCACGTAGTATCACGTAGCGGTACAAAGCTATTTATATGTAATGTCTGTCATAGAGAATTCAAATTAAAAAGCCGTCTAACTAAGCACATGGTATCACATTTTCGTGTCACGTTTAAATGTAGTCTGTGTAAATTGAAATTTAGAGAAAAATCTTCTCTAAATATTCACATGCTATCATCACATAACGACGTTAAGATATTTCATTGTAAAGTCTGTCAAATGCAGTTTAGAGAGAAGTCCGATCTAATCGAACACTTTAACATACACGGTGCTAAGCCATTTAAATGTCACGTGTGTCAATCTGGATTCCCGACCGAATGCCGTCGAAACGACCACCTGGCAACACATTTCCGTGAAATGCCGTTTGAATGTAATCTGTGTCAACTTAAATTCAGAAAAGAATCGAAACTAAAAAAACACTTGTTGTTAACGCATGACTTTAGGTCGCATGAGTGTAATGTCTGCCAAAAGAGATTTAAAAGAGAAGCCAGTCTAAAGGAGCACATGATAACACATAGTGGAATTAAGCCACATAAATGTGATATATGTCAACTTCAATTTACACAAACGTCTAGTCTGAACATACATATGTTAATACATAAAGGCATTAAGCCATTTAAATGTAATCTGTGCGAAAAGAGATTTAGAACAAATGTCCATCTGAGAAGGCACGTGCCAACGCATAAAGTCGGTAAGTCGTTTAAGTGTAGCGTGTGTCCGTATGAATGCTGGAAGAAATATATTCTACATGAGCACTTGTTAACACATACTGATATTAAGCCGTTTAAGTGTGACGTGTGTCAAAAAGAATTCAGAAaagaaacattattaaaaaaacatataataaCACATAATGATGTTAAACCGCATGAGTGTGATGTATGCCAAAAGGGATTCAGAACAAGGCCGAAATTGAGAATACACTTGTTAACACATAAAAATGGTAAGTCATTGAAATGtgattaa
- Protein Sequence
- MELFKLQQFGERFESKMKTDITHTEIDLKDEHLDLDTGDISQTDPNALNFEFVNMKQEIGEEDEISPIEDKSWSADPWANNCIKKEKDEGGSEEVDTNMDKSSKELLSVDRDCSYFSGDKEGGCVETDCTTRNGDSDKSITTSHVVSRSGTKLFICNVCHREFKLKSRLTKHMVSHFRVTFKCSLCKLKFREKSSLNIHMLSSHNDVKIFHCKVCQMQFREKSDLIEHFNIHGAKPFKCHVCQSGFPTECRRNDHLATHFREMPFECNLCQLKFRKESKLKKHLLLTHDFRSHECNVCQKRFKREASLKEHMITHSGIKPHKCDICQLQFTQTSSLNIHMLIHKGIKPFKCNLCEKRFRTNVHLRRHVPTHKVGKSFKCSVCPYECWKKYILHEHLLTHTDIKPFKCDVCQKEFRKETLLKKHIITHNDVKPHECDVCQKGFRTRPKLRIHLLTHKNGKSLKCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00283896;
- 90% Identity
- -
- 80% Identity
- -