Ccar005195.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000001.1:95666511-95671482[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.5 2.4e+02 4.2 0.4 3 23 6 26 4 26 0.95 2 14 0.0017 0.27 13.5 3.1 1 23 348 370 348 371 0.95 3 14 0.00064 0.1 14.8 0.7 2 23 439 461 439 461 0.97 4 14 7.1e-05 0.011 17.8 1.4 2 23 464 485 463 485 0.97 5 14 2.3e-05 0.0036 19.4 0.9 1 23 491 513 491 513 0.97 6 14 1e-05 0.0017 20.5 1.4 2 23 520 542 519 542 0.94 7 14 0.027 4.3 9.7 1.3 6 23 556 573 554 573 0.97 8 14 0.00093 0.15 14.3 4.3 2 23 579 601 578 601 0.96 9 14 0.05 7.9 8.9 0.2 2 23 618 638 617 638 0.96 10 14 0.00033 0.052 15.8 1.9 1 22 644 665 644 666 0.92 11 14 5.1e-05 0.0082 18.3 0.9 1 23 674 696 674 696 0.99 12 14 0.00093 0.15 14.3 9.9 1 23 702 724 702 724 0.98 13 14 8e-07 0.00013 24.0 2.9 1 23 730 752 730 752 0.99 14 14 0.023 3.6 10.0 9.8 1 23 758 780 758 781 0.96
Sequence Information
- Coding Sequence
- ATGGAACAGATTGCATGTCCAGTATGTACTCTCTTTTTAAGAGAGGGAATGACTCTGCAAAGTCATTTGCACACGCACCCTAAAGCTCAAGTTATTGAAGCACTGGTGCGATTGTCTGGAGGTCCAGCAGGTGACAAGGCAGTAGAGAAATCGTGTCTTCTTTCATCTCCAACACTTCCAGCTCAAGTTACATCTATTACTTACCAACAGTTTCTCAGCAGCACAACAAGCTTTGTTAATCCAAGTGCACTCCCTCCTCCGCCtccactctctccttatctccccAGGCTTACAACTCCAACTAATCATTATCAGCAGTATCCTATTCAAGAGCAAACTGAAGTTAATTACTCAAATGCGTACTCTCCAACTAGGCCATCTTCTGCTATTCAATACACACAGTTAGATGATTATAACCCGACTAATCAACAACCTGGAGCCATTTTAGGTGTaaatgaaccaaattcagataccACGCATGCCAGCGATTTGTTATACAATCGACATAATTCAGAAGAATGTCACCAAGAGTTTGATGATCAAAACAGGTCATTCACCACAGATCTTGGTACAGTTATTAGTGATAGCCACCGTGTGATATCAAACAGCCCAACTGGTATTTATAACAGTTATTCAGATGATCATAATAAAGTGGGTTGGGAAGAATCACCTTCACAGTGTGAAGAAGCACATTCTCCTACAGCTTCTCGTTCAAGTAATTGTTCCGTTAGAGTTAGGAAAGATCTTGGTGAAACACCAGCTGAAGAAAACACATTGAACCATCTCACACCTCCGCGAGAAGAATTCATTTTACCGTGTTTTGATTATGATGAAGAAAATAATGCAGAACCAGATGACCAAATGGATGACACATCACCTCAGAGTATCCCACTGAACATACATACTGATGAGTCAATGCCCCCTCGTGGCGAGCTTTCAGGTCAAGGCACCAATAGTTCTGTTTGGCAGGTGAATCAggaaaatttaagtaattttggtGTTGTCCTTGATGATCAAGGTAGAAATGAAGAACTTGAACAACATAAATGTTCAGACTGTAGTAAGGAATTCTCCTCTGTCCAAGAGTGGAGGATGCACATTAATCTGCATCATCAGCAGCATCCTGTGATTACAGAGTCTGCACCTCCAACTGAGGCAATAACTCCTTTGCACCAGGATACATTTAGCAGTGTCTTTGTGAAAGCCGAGAAGGTACGTGTAATTGAAGAAGTGAAGGCTTTGAAAAATGAACCAAGTGGAAAAGACACCAAGGATAATATTCTCGTTACAAAAAGTCATCGTAGACTTCCAAGAACTTGCTCAACTTGTGGCATGTATTTTAATTcgactgaagaatttaaaattcatatCAGAAAAGTTCATCCGTTAGAGTGCACAATTTGCGGTAAGTGCTTTTTGCGTAGTTCTGGTTTAGCTTTGCATCAGAAACGTCATCTGAAAATAAAGCCGTACAAATGTGATCTTTGTGATAAAACATTTGTAACTAATCAAAAACTGCTTGAACATAGAAACGGTCATACTGGTGAAAAACCATTGAAATGTCCATATTGCCCACAGACATTTATCAGACATTCAAATTTGATTCAGCATAAGCAGTATATCCatttgaaaatgaaaaagaaagtgaaggacttttattgttcatgTGGTGAAGTATTTCATTCAAAAAAGAAGTTGGCATGGCATCAAGAAACACATGATCCTAAGCCTAAACAGTGTCTCTATTGTAATGAAAGGTTTATACATACCGCGAGTTTAACTCGTCACATTCGGCACAGTCACGATCGTAGTTATTTACCAAAATGTAAGAGTGACCCTAAAGAAAATGTTGAGTGTCCAATATGTCATAGAATAGTTTTAAAAGGATCTCTTCGTAATCATATTTTGATTCACAGCGGAATGAAACCATATTCTTGTAATACATGTGGAaagaaatttcaaacaaaatggAATATGAAGTTACATCAGTGGACTCATGCTGCTCGTGCTTCGAAACCTTACAAATGCAAAATGTGCAAGGCTGCGTTTGTTCGTTTAAATGAATTTCAGGTCCATTTACGTTCTCATAAAAATTTACGTCCCTTTTCTTGTAACCACTGCGGTCGACAATTTACGCACAAGTACAATTGTATGAGACATATGCGGGAACATGAAGTAACAAAAATGTTTAGATGTGATGTCTGCGGGAAAGAATTTCATCGCAGTTACTATTTAAAAGATCACATGCGGGTCCATACAGGGGTTAAGCCTTATTCCTGTCACATATGCTCAAAGACTACATCCACCAAAACAAACCACAATAAACATTTAAAGACACATCATGCACGAGAACCTGTCAATAGCGAAAATTAA
- Protein Sequence
- MEQIACPVCTLFLREGMTLQSHLHTHPKAQVIEALVRLSGGPAGDKAVEKSCLLSSPTLPAQVTSITYQQFLSSTTSFVNPSALPPPPPLSPYLPRLTTPTNHYQQYPIQEQTEVNYSNAYSPTRPSSAIQYTQLDDYNPTNQQPGAILGVNEPNSDTTHASDLLYNRHNSEECHQEFDDQNRSFTTDLGTVISDSHRVISNSPTGIYNSYSDDHNKVGWEESPSQCEEAHSPTASRSSNCSVRVRKDLGETPAEENTLNHLTPPREEFILPCFDYDEENNAEPDDQMDDTSPQSIPLNIHTDESMPPRGELSGQGTNSSVWQVNQENLSNFGVVLDDQGRNEELEQHKCSDCSKEFSSVQEWRMHINLHHQQHPVITESAPPTEAITPLHQDTFSSVFVKAEKVRVIEEVKALKNEPSGKDTKDNILVTKSHRRLPRTCSTCGMYFNSTEEFKIHIRKVHPLECTICGKCFLRSSGLALHQKRHLKIKPYKCDLCDKTFVTNQKLLEHRNGHTGEKPLKCPYCPQTFIRHSNLIQHKQYIHLKMKKKVKDFYCSCGEVFHSKKKLAWHQETHDPKPKQCLYCNERFIHTASLTRHIRHSHDRSYLPKCKSDPKENVECPICHRIVLKGSLRNHILIHSGMKPYSCNTCGKKFQTKWNMKLHQWTHAARASKPYKCKMCKAAFVRLNEFQVHLRSHKNLRPFSCNHCGRQFTHKYNCMRHMREHEVTKMFRCDVCGKEFHRSYYLKDHMRVHTGVKPYSCHICSKTTSTKTNHNKHLKTHHAREPVNSEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -