Ccar028978.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000003.1:87566325-87594942[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 1 1.6e+02 4.8 3.6 1 23 150 172 150 172 0.98 2 20 0.00057 0.09 15.0 3.9 1 23 178 201 178 201 0.97 3 20 0.00013 0.02 17.1 7.5 1 23 207 229 207 229 0.98 4 20 0.0034 0.54 12.6 3.0 1 23 235 257 235 257 0.98 5 20 4.8e-05 0.0075 18.4 0.6 1 23 263 285 263 285 0.97 6 20 0.0049 0.78 12.1 1.0 3 23 293 313 291 313 0.95 7 20 0.00012 0.019 17.1 2.9 1 23 318 341 318 341 0.97 8 20 0.3 47 6.5 1.8 2 23 662 683 661 683 0.96 9 20 0.038 6.1 9.3 0.5 1 23 729 752 729 752 0.97 10 20 0.00018 0.029 16.6 3.6 1 21 756 776 756 777 0.94 11 20 0.0008 0.13 14.5 0.1 2 23 819 841 818 841 0.96 12 20 0.0045 0.72 12.2 3.4 2 23 882 905 881 905 0.94 13 20 2.3e-05 0.0036 19.4 3.9 1 23 911 934 911 934 0.97 14 20 4.1e-06 0.00065 21.8 4.0 1 23 943 965 943 965 0.98 15 20 0.12 20 7.7 2.2 1 22 971 992 971 995 0.91 16 20 0.0077 1.2 11.5 0.9 1 23 1017 1039 1017 1039 0.97 17 20 0.33 52 6.3 1.5 1 22 1080 1101 1080 1104 0.90 18 20 0.019 3 10.2 1.2 1 22 1130 1151 1130 1154 0.90 19 20 0.0039 0.61 12.4 3.3 2 23 1157 1179 1156 1180 0.95 20 20 0.0037 0.58 12.5 6.6 1 23 1199 1222 1199 1222 0.98
Sequence Information
- Coding Sequence
- ATGTGGGTATTCAGGAAAATTTTCAGAATTTCATGGGCCGTTCATGCTACAAATGTTGAGGTTTTGAGATACTTGGACATGGACTGTGAGTTAATGAGAATAATCAAAAGAAGGAAGACTGCCTACCTTGGTCATTTATGTGGGTGTGATGAGCGTGATGGGGTACGCAAAACTTCTAATAGGATTCAAGCGAAAAAGAATAGAAAtataaaatctaaattaattGGTAAAGGTACTAAAGTCAGTAAAATAAAATCTCAGCGTGTGTTAAAAGTACATAAAAAGTTAACATCAAAAACTAAAGTGCACTCTTCAAAAACACGTACTGCACACACCAAAGTGTCAGATACTGAACTACCAAAAGATGTTGAAAATGATAATGCCAAAGAAGCATGTGGTGAGAAAATCAAAGATACAGATGATGAAAACAGTGCTGAAGATCTCATGTACCGATGTAGAACTTGTGGATTTGTATCATCCGATAAACTTCTTCATAGACGACATTTAAGAAACCACTCATCAAGAAAAGAATACATTTGTCATTTGTGTGGACGTGCATATTATAATAGCAGCAGTTATTCGTACCACATGAGACATGTTCATGAAGgaataaaaaaccatgtttgtgATATATGTGGACATAAATTTTCCCAAAAACATTTCTTGAAATCTCATTTAAGGACTCATACTGATGAACGACCTTACATGTGTTCTCTATGTGGAAAGACTTTCAGATGTTCTGCTTCATTATATGCTCATAATAAAACCCATGTCGATAGTTTTCCATTTGCTTGTGAATTGTGTGATAAAATGTACAAAGCgaaatatttattagaaaatcATATGAAATCCCACAGcggtgttaaaaatattatttgtgaaACTTGTGGTAAAGATTTTTTCACGAGAAAAGCAATGTTGCGTCATCATGAGATACATAACAATAAAGAGTATTCTTGTACATATTGTCCAGAAAAATTTAATGTTAGGAGATATTTAAAGAGACATTTGAAATCAAAACATAAGGACAGGAAGgaaAAAATGGAAGTAATTATAGAGAAACAAATGGATTTCACAATAGATGAAAGTGTTAATGAAGAAATCAGAAATGAAGAATTTAATGCAGTCTGGTTTACCCACGTGGATGCTGATAATTGGCAACAAGTTTGTCGATTATGCGCCAAACAAAATGATAATTTAATACCAATTCATGAACAAGGACAAATGGAATGTGATATACcttcaattattaataaatatcttCCTTTTAAGgttTCAGAAAATGATGGATTCCCTACACATTGTTGTCACCAGTGTTTGTCACTTATTATATCGTGGAATGAATTCATTGACTCGACTTCAAAAGCAAATGAAAAACTCAATAGATTTTATGCACAAATGAATGCAGAGCATCAGGTactaaaagttgttgaaaatgaaaaactcgTTCCAGAAATTGTTATGGATGAGGTTTATTGTGGGGCTGATGAAGATAATATAAGTGAAGAAGCATGTGTTGTTGAGGAAGTAGAGACAAACACGATTGATAGCTCTGATGCACAGAAGGAGCCAAATATGGAGATAGATGATGATGTTATGAATGAAGAAGCTGGAGTATATTTTGAATTAAGAAATGATGACAATTTTACAGAAACCATTCTTGGGGTGTCTTCCGGTGATAACAATGTCAACCCCATTACCACAAGTGATGAAAAGAAAGTTAAAAGTAAAAGAGAACAGAAAAGTGCGGAACCTCCTCCAGAACTTCAAGAATACGTATTACATCAGCCCATGAAATACGTCAAAATAAATGGATGCCAGTATCTTAGAACTAAAGTTTTTGGATTCGAGCCACAATCTGCACCTAAAGGCAAAGAAAATGTGCCtgcgttattttttatttgtactatatGCAACGAGACtatgataaattttaaagttatagaTCATTCCAAATCACATTACCCGTTGAAAGTCAGTGATTCTTGCCGACTGTGTTATTTTGGATTTAATTCAGTCAACTCTTTTAGGAACCATTTAAAAAGGCATACTGTATACATAGATGAAGTATATAAGCCACAAGAACAGACTGGTATTGAAGATGTGTTCAGGCAATCTTCAAGTAAAGATAAAGATCAGAATAAGATTACTAACAAAGgtatttcaattaaaaacaatgagACATTTGTCTGTGAATTTTGTGGTGTGATGTACAATAACAGAAAGATTTTCCTTCAACACATACGACGAGTTCATGTAACGCCCTTTGTGTGTAAACTCTGTCGAAAGAGATTTTCAAATAAGGGATCGCTAAAAAAGCATAGGTGTGTTGAAATCGTTACCAAAGGACCAAACGATAAAGTAAGTTGGTTCAATTGCAAATGCAAAAAGATTTTTCTCTTTGAAGATCAGTATGTAAATCATATAAAGATTTGCGACAGAGCTAAGTTTGTTACATGTGAAGAATGCGGTCGTGAATTTCCAGATCAGCCGAAATTGGACAGCCATATTTTACGGCAGCATATCAGATTGCAGGATCTCGAACAAAGACCATCTGATATTTGGATCTGTGAAATTTGTGGTTGTCATTTAAGTTCACTTAGCGCTAGAAAACATTATTTGACCcataaatttgtagagaaaaaatgtaaGTGTATCGTATGTGGCATGAAATTCACAAATAAAACTGCACTCGATAAACATACCCAATCTCACAGCGATCTTAGACCTTTCACTTGTAATATTTGCAACGCTACTTTTAAAAGAAAGGATCACGTTAAACTCCATATGagaaataaacacaatatttatAAAGATGAGATGAAGTATGAGTGTAAAAAATGTAAACGTTATTTCACTACTCAATCTTATTTAATCAGGCATCAAAGGTTACATTCTCAGGGGGTTAGTTACGAGTGCGTAGTATGTAGGAGTAGATTTCCAACAGAGCACAGTCTGAAAATGCATCAGACTAGAACTAAACATGACACTGTAAAAGATGATTCCGAGACTAAAGTATCAATGAATACTGCTGATTGGGTCAATAGATTCAGATGTAATGTATGCAATCAAAGGTATGGATCgataaacagtttaaaaaaacattCGCTCGTTCATTTAAAGAAACCTTTAGTCGCTGATAAGGGGAAAGAAACTGATAATTGTAATGAAGATGATATTAAAGAGGTAGATTTAATTGTAGAACAGGAGAAACCGGATAGCAATCCGGAAAATATTTACGAGTgccaaaaatgtagtaaacggtACCTGTCGCCATTCGGTTTAAAACTCCATCTCAGTAGAACTAAACATGGACCTGTTGTTTTGAAAGGGAAACGTAAACAAAAAGGACCGATCATCTGTAATACGTCTGAGAAAAATCCTCGATTCAAATGCAGTGAATGTAATGAAATGTTTGGTACATTATTGAGTctaaaaatgcataaaattaaaCGAAAACATTTCTCACAGTGTCCCAGTTGTGATAAACGATTCGCGTTAGAACATAAATTAAGGAAACATTTAATCAAAGTCCACCACAGGAACGATATAGATGCAAAAATTAACGAATTTACCCCTGCTGAAATTAAACCTTATCAGTGCGGTGATTGTAAACAGAAGTTTTCAATGCATCATAATTTTGTGACTCATATGCAAAGAAAACACAACGTAACTGATCcacaaacattaaatttaatatatatagaCTCGGAAGTTTTCGAACAGAAAACAGCTGATGGTGAAACACCAGTTGTTTATCAGTGTACTGATTGCCTTGATAATTTCCTAACCGAAGAAGAATTTCAGAATCACACTCATGAAACGACTAGTTACATTGTACCTGAACAGTTTGCTTCTAATATTATAACGACTGAAATAGTGGAACATAATGCTTCATTGCCTTTAGTTACAGCAGATGTGATTTTACCTGTTGAAAATGGATAA
- Protein Sequence
- MWVFRKIFRISWAVHATNVEVLRYLDMDCELMRIIKRRKTAYLGHLCGCDERDGVRKTSNRIQAKKNRNIKSKLIGKGTKVSKIKSQRVLKVHKKLTSKTKVHSSKTRTAHTKVSDTELPKDVENDNAKEACGEKIKDTDDENSAEDLMYRCRTCGFVSSDKLLHRRHLRNHSSRKEYICHLCGRAYYNSSSYSYHMRHVHEGIKNHVCDICGHKFSQKHFLKSHLRTHTDERPYMCSLCGKTFRCSASLYAHNKTHVDSFPFACELCDKMYKAKYLLENHMKSHSGVKNIICETCGKDFFTRKAMLRHHEIHNNKEYSCTYCPEKFNVRRYLKRHLKSKHKDRKEKMEVIIEKQMDFTIDESVNEEIRNEEFNAVWFTHVDADNWQQVCRLCAKQNDNLIPIHEQGQMECDIPSIINKYLPFKVSENDGFPTHCCHQCLSLIISWNEFIDSTSKANEKLNRFYAQMNAEHQVLKVVENEKLVPEIVMDEVYCGADEDNISEEACVVEEVETNTIDSSDAQKEPNMEIDDDVMNEEAGVYFELRNDDNFTETILGVSSGDNNVNPITTSDEKKVKSKREQKSAEPPPELQEYVLHQPMKYVKINGCQYLRTKVFGFEPQSAPKGKENVPALFFICTICNETMINFKVIDHSKSHYPLKVSDSCRLCYFGFNSVNSFRNHLKRHTVYIDEVYKPQEQTGIEDVFRQSSSKDKDQNKITNKGISIKNNETFVCEFCGVMYNNRKIFLQHIRRVHVTPFVCKLCRKRFSNKGSLKKHRCVEIVTKGPNDKVSWFNCKCKKIFLFEDQYVNHIKICDRAKFVTCEECGREFPDQPKLDSHILRQHIRLQDLEQRPSDIWICEICGCHLSSLSARKHYLTHKFVEKKCKCIVCGMKFTNKTALDKHTQSHSDLRPFTCNICNATFKRKDHVKLHMRNKHNIYKDEMKYECKKCKRYFTTQSYLIRHQRLHSQGVSYECVVCRSRFPTEHSLKMHQTRTKHDTVKDDSETKVSMNTADWVNRFRCNVCNQRYGSINSLKKHSLVHLKKPLVADKGKETDNCNEDDIKEVDLIVEQEKPDSNPENIYECQKCSKRYLSPFGLKLHLSRTKHGPVVLKGKRKQKGPIICNTSEKNPRFKCSECNEMFGTLLSLKMHKIKRKHFSQCPSCDKRFALEHKLRKHLIKVHHRNDIDAKINEFTPAEIKPYQCGDCKQKFSMHHNFVTHMQRKHNVTDPQTLNLIYIDSEVFEQKTADGETPVVYQCTDCLDNFLTEEEFQNHTHETTSYIVPEQFASNIITTEIVEHNASLPLVTADVILPVENG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -