Ccar032990.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000004.1:62169709-62182036[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.017 2.7 10.4 8.1 1 23 135 158 135 158 0.95 2 17 0.012 1.9 10.9 0.4 2 23 175 196 174 196 0.96 3 17 6.6e-05 0.01 18.0 0.7 1 23 202 224 202 224 0.97 4 17 6.1e-06 0.00097 21.2 2.9 1 23 230 252 230 252 0.99 5 17 0.00093 0.15 14.3 0.3 1 23 259 281 259 281 0.97 6 17 0.021 3.3 10.1 2.8 1 23 287 309 287 309 0.98 7 17 7.9e-05 0.012 17.7 0.2 3 23 317 337 315 337 0.96 8 17 3.9e-06 0.00062 21.8 0.4 1 23 343 365 343 365 0.98 9 17 3.9 6.2e+02 2.9 0.9 3 23 374 396 373 396 0.84 10 17 0.0029 0.47 12.8 3.6 1 20 497 516 497 519 0.94 11 17 0.0011 0.17 14.1 0.1 2 20 524 542 523 544 0.92 12 17 0.0002 0.033 16.4 2.3 1 23 598 620 598 620 0.98 13 17 0.09 14 8.1 0.8 3 23 628 648 626 648 0.97 14 17 8.2e-06 0.0013 20.8 0.2 1 23 654 676 654 676 0.99 15 17 0.26 41 6.6 3.6 1 19 682 700 682 705 0.92 16 17 0.029 4.6 9.6 0.2 2 23 712 734 711 734 0.95 17 17 0.49 79 5.8 0.1 2 23 742 764 741 764 0.92
Sequence Information
- Coding Sequence
- ATGGCTACCTTTGAACAatttggtaatgtttttaaagatgATTGTgtatttgttgattatttgccAATAAATCTTCATGAAGAAGAGGTAGTATGTGTAACTCAAGATGATCAAGTGATACAATCCTCCGAACGTATTGAAACAACAGTTATTTCAGTTAATGAAGTTAGTAGTTCAGATTCAACCGAAACAGTTGCCAATAATGATGGTAATGATGTTGAAAGTATTAAGGAGGAGGAAGATCCAATGGAAACTGCAATTGTAAATGATCGAGACAATTATGAAGATTCAGATTACGAAAATTCAGAAAACCAAAGAGGTGACAGTTATGATGTGTACAAAGAATTTCCACCACCAAAAATTATTTCAGATGGTAATGgtactgaaaaattattaaaaactcatGCTTGTTTTCATTGTACGAAAATGTTTACAACACATGATAAAATGCTAAGGCATGTAAGAATGTTCCATAAAGAAAATGTACAAGTTCGTATAGATCGAGATGGTAAACGATGTTGGGTGTGTGGTAGCTGTAACAAAACTTTCATCTCACGTAAAGGATCAATAATACATCAAAGAACACATACTGGTGAACGTCCGTATACTTGCACGATTTGTATGAAACGTTTTATAGACAGCAGTACTCTAATGAAACATCAGGTTATACATCAAGCGATACGACCATTCACCTGTCATGTATGCAAACGAGGTTTTAACCAGAAAGTTGCATTACAACGACACGAACGAACGCATTCACAAGCGCAGAccatttatatttgtaaatattgtCCGAAAACATTTCTCGTCATGAGTAGTTTACAAGCTCATGAGAAAATTCATTCTGGTATAAAACCATTCTCGTGTAATTATTGCCCGAGTACATTTCACACGTCAACTGCACAGCGACAACATGAACGTGTCCATACAAATGAAAGGCCTTACGGTTGCCTATATTGTCCTAAAGCATTCAAAGATAGTGGCACTTTATTTAAACATCAAGTTATCCATTCCGGTATTAAACCGTTTGTTTGTCCCTTATGTTCACAGGGTTTCACGCAAAAAGTTGcgttaaaaaaacatattaagtCACACATAACTAAGTCGAATATCAATTCATGCGATATTTGTCAAATTGATAGTTTTGAAACGAAAGATGATTTATGCGATCATTTCGAGAAGTATCATGTCGAAAGTCATCCGAAATTATTGGAGGTTCGTTCTGTCGCATCGTCTTCTATTAAAAATTCATCGTCATCGCCTGTTAAATACTCACCGCTATCTGAATCCGATTTAACAGATTTAACAACATTATGCGATGTAGCGATCTCAACGGctaaaaatttatcatttaatgGTAACAGTTTAATAAcgaacagtaataataataatgacaacaATGTACTTCGTAATCAGGAAGAAATAATGGAACCTGAAGACGAAAAAGTAAATATGAAACTATCCTATAAATATAACTACCATTATCAATACTCGTGTTCAGAATGTAGTATGAGTTTCAAACGACTGAAGTTGTTAAAATCGCATCTGTTAtgtcataatttaaaattgatgTGTAAATATTGTGGTAAAGCTTATACCGATAGAATCTTGTTAGAGGAACATGAAAAATTCTATTGTAACAATAGAAATTcatcaaattttaataatattgtgaacaacaataatactaataacaataataataaagtcACTAATaggaaaagaaataaattaaaaacatcatCGATTAAAGTAAAAACTTCTTCATCACCATCGTCCGGTAAACGACAATTTTATTGTGAACGTTGCGATAAATACTTCAGCTCACGTAATGGTTATATGATTCATCAACGATCTCATACCGGTGAAAGACCATATGGTTGTCGATGGTGTGAAAAAGCGTTTGGTGATTCGGCGACAAGACATAAACATGAACGTATACATACTGGCGAACGTCCATTCAAATGTCTACAATGCCCACGAGCATTCAATCAACGCGCTGCGTTAAGAGCACATCAAATAACACACAGTGTTGATCGCGCATTTATCTGCCTATATTGTCCATCGTCGTTTCCGTACGCGGCGACGTTAAAACGGCATTGCGATAGTTGTCATAAAGATGAAATCGCAATCGTGTGTCCTATTTGTGATAAATTGTTATTTGGTAACGATAATTTACATTTACATGTCAAATCTGATCATATCGTTAATAATAAACCTTGCGTTTGTCCGTTATGTGATTCGGGTATATTTACGAATAACGATGAATTCGCTGATCATATTTTATGGCATGCTAAACAAATACCTAGTAATAATTCTATTGAACAGTTTAAGAAAACGTACAGACTGGAGCTAGTACAAATAAATCTCGTATTTTCAGTTGATATCCTTGCTTAA
- Protein Sequence
- MATFEQFGNVFKDDCVFVDYLPINLHEEEVVCVTQDDQVIQSSERIETTVISVNEVSSSDSTETVANNDGNDVESIKEEEDPMETAIVNDRDNYEDSDYENSENQRGDSYDVYKEFPPPKIISDGNGTEKLLKTHACFHCTKMFTTHDKMLRHVRMFHKENVQVRIDRDGKRCWVCGSCNKTFISRKGSIIHQRTHTGERPYTCTICMKRFIDSSTLMKHQVIHQAIRPFTCHVCKRGFNQKVALQRHERTHSQAQTIYICKYCPKTFLVMSSLQAHEKIHSGIKPFSCNYCPSTFHTSTAQRQHERVHTNERPYGCLYCPKAFKDSGTLFKHQVIHSGIKPFVCPLCSQGFTQKVALKKHIKSHITKSNINSCDICQIDSFETKDDLCDHFEKYHVESHPKLLEVRSVASSSIKNSSSSPVKYSPLSESDLTDLTTLCDVAISTAKNLSFNGNSLITNSNNNNDNNVLRNQEEIMEPEDEKVNMKLSYKYNYHYQYSCSECSMSFKRLKLLKSHLLCHNLKLMCKYCGKAYTDRILLEEHEKFYCNNRNSSNFNNIVNNNNTNNNNNKVTNRKRNKLKTSSIKVKTSSSPSSGKRQFYCERCDKYFSSRNGYMIHQRSHTGERPYGCRWCEKAFGDSATRHKHERIHTGERPFKCLQCPRAFNQRAALRAHQITHSVDRAFICLYCPSSFPYAATLKRHCDSCHKDEIAIVCPICDKLLFGNDNLHLHVKSDHIVNNKPCVCPLCDSGIFTNNDEFADHILWHAKQIPSNNSIEQFKKTYRLELVQINLVFSVDILA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -