Ccar028970.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000003.1:87475647-87477182[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.75 1.2e+02 5.2 2.0 3 23 56 77 54 77 0.91 2 14 0.013 2.1 10.7 0.0 2 21 85 104 84 105 0.94 3 14 0.088 14 8.1 3.1 1 23 119 142 119 142 0.92 4 14 3.5 5.5e+02 3.1 7.4 1 23 147 170 147 170 0.83 5 14 0.00028 0.045 16.0 0.7 1 19 177 195 177 195 0.98 6 14 0.00017 0.027 16.7 2.3 1 23 208 231 208 231 0.95 7 14 6.5e-06 0.001 21.1 1.7 2 23 254 276 253 276 0.96 8 14 0.00049 0.078 15.2 1.0 1 23 310 332 310 332 0.98 9 14 1.5e-05 0.0024 20.0 4.3 1 21 338 358 338 361 0.96 10 14 3.8e-06 0.0006 21.9 2.7 1 23 367 389 367 389 0.98 11 14 1.1e-05 0.0017 20.5 0.1 1 23 395 417 395 417 0.98 12 14 2.6e-05 0.0041 19.2 6.2 1 23 423 445 423 445 0.98 13 14 1.4e-06 0.00023 23.2 1.1 1 23 451 473 451 473 0.98 14 14 2e-05 0.0032 19.6 5.6 1 23 479 501 479 502 0.96
Sequence Information
- Coding Sequence
- ATGAAGACAAGAACAACCAAGGGAAGTGTAACGCTGGATCATTTATTTTACAGGTCATCGCCTCTGACGAAAACAGGTTGTGAGAAGATATATGTTAGTGAAAAGTGGTGTGATTCAACAGATACAGACGCTCAGacagatttaaataatgaaaatgctTTGTTTTGCATACATTGTGGTCGTTTATTCCGTTTGAAATGCGAGTTGGTAGAACATTTAGAATCTGATCACAGTGAACTCAGAAAGATAATAGAATGTGAAGATTGTGAGGCTTATTTCTCTTCAGTAAATGAATTACAAGCTCATCTGAAAAACAATTTTCTtgaaagtatttataatttttccgcCAATAAACATTTTTGTTCTGTGTGCCTTAAATCGTACGTTAAAAAATGTGAGTTAGAATTACACGTCAAAGATGAACATTTAACTTCAGGATTTTATTGTAGGAaatgcaacaaaaactttaccaGGTATGTTTGTTTCgaatttcacaagttaaaacggCATAAAGAACATGAACAGGATTTTGAATGTACTAAGTGTTCTAAAACGTTTAATTCTTTGGTAGATTTAGAAAGACATTGTGGTGAAAATAATTGTGAAGatgaaaaacaaatgttttcatGTACTTTATGTGATCGTAAATTTACACGCAAAATTGATATGATGAAACATCGCTACCGAGCACATACGGAGGATGAATTGGCTAATGATCCTTTTGAAATGGCAATTAAAAAGACTAATTCACGTAAGCTTCAGTGTAACGACTGTGGGAAATTTTATGCTCGTAAAAGAGATCTATTAAAACATTATCAAAGAAAACATCTTGGTGAAGTGTTTGCAGGAACTAAAGTAAAAACAATTGATCATATGAGCGTTGAATTATTGAAAAAAGCAGAAATGGAAGTAAATGGCAGCATAATTTATCATTGTAGTGTTTGTGGTAAGAATATTATTACTAAAAGAGGTTATATTCGACATGTTAGAATCCATACTGGAGAGCGACCTTTTACTTGTCATATTTGTGGTAAACAATATCGTTCATCAACTGATCTGACGCGACATTTAAGATGTGTACATGATGGAATTAAAAACTACAGCTGTGATATCTGTGGGAAATGTTTTGCTAATAAAAGCACTCGAAACGATCACAGAAGAATTCACACTGGAGAGCGGCCATATATCTGTGATGTTTGTGGTAAAGCTTTTTCCACTCCGAACTCTATTTATGTCCACCGAAGAATCCACACTGATTATTTTCCTCATGAGTGTACTTCGTGTGATAAACGTTTTCGAAGGCGTCAACAGCTCATACATCATGTTAGAACTCATACCGGCGAAAAACCTCATACCTGTGAGATTTGTGGCAAGAGTTTCGGTGTAAAGGATGAACTCTCAAGACATAGATTGACGCATTCCACTGAAAAACCTTATGTATGTAATGAGTGTGGTCTTTGTTTTGGACAGAAACGTTACTTAAAAAATCATACTAAAACGCACCATAATGTTATATACTTAGAtattcagaattaa
- Protein Sequence
- MKTRTTKGSVTLDHLFYRSSPLTKTGCEKIYVSEKWCDSTDTDAQTDLNNENALFCIHCGRLFRLKCELVEHLESDHSELRKIIECEDCEAYFSSVNELQAHLKNNFLESIYNFSANKHFCSVCLKSYVKKCELELHVKDEHLTSGFYCRKCNKNFTRYVCFEFHKLKRHKEHEQDFECTKCSKTFNSLVDLERHCGENNCEDEKQMFSCTLCDRKFTRKIDMMKHRYRAHTEDELANDPFEMAIKKTNSRKLQCNDCGKFYARKRDLLKHYQRKHLGEVFAGTKVKTIDHMSVELLKKAEMEVNGSIIYHCSVCGKNIITKRGYIRHVRIHTGERPFTCHICGKQYRSSTDLTRHLRCVHDGIKNYSCDICGKCFANKSTRNDHRRIHTGERPYICDVCGKAFSTPNSIYVHRRIHTDYFPHECTSCDKRFRRRQQLIHHVRTHTGEKPHTCEICGKSFGVKDELSRHRLTHSTEKPYVCNECGLCFGQKRYLKNHTKTHHNVIYLDIQN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -