Basic Information

Insect: Catonia carolina
Gene Symbol: -
Assembly: GCA_035578175.1
Location: JAQMRL010000025.1:1866185-1899513[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 1.6 2.6e+02 4.1 0.2 2 23 470 491 469 491 0.90

2 18 0.006 0.95 11.8 0.3 1 23 497 519 497 519 0.95

3 18 0.021 3.3 10.1 2.0 1 19 540 558 540 561 0.94

4 18 0.13 21 7.6 4.6 2 23 569 590 569 590 0.90

5 18 0.0062 0.99 11.7 0.3 2 23 597 619 597 619 0.89

6 18 1.3e-05 0.0021 20.2 4.6 1 23 625 647 625 647 0.96

7 18 6.9e-07 0.00011 24.2 2.4 1 23 656 679 656 679 0.95

8 18 0.027 4.2 9.8 0.3 1 23 689 711 689 712 0.95

9 18 0.00019 0.031 16.5 1.9 1 23 733 755 733 755 0.96

10 18 0.0019 0.3 13.4 0.8 1 20 761 780 761 783 0.93

11 18 0.061 9.7 8.6 2.4 1 23 803 825 803 825 0.97

12 18 0.014 2.2 10.7 0.8 1 23 831 853 831 853 0.98

13 18 1.8e-05 0.0028 19.8 0.5 1 23 869 891 869 891 0.99

14 18 2.2e-06 0.00035 22.6 0.5 1 23 897 919 897 919 0.98

15 18 0.012 2 10.8 1.0 1 23 925 947 925 947 0.98

16 18 0.00026 0.041 16.1 3.8 1 23 953 975 953 975 0.98

17 18 1.3e-05 0.0021 20.2 0.9 1 23 981 1003 981 1003 0.99

18 18 3.4e-05 0.0054 18.9 0.6 3 23 1011 1032 1010 1032 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	1.6	2.6e+02	4.1	0.2	2	23	470	491	469	491	0.90
2	18	0.006	0.95	11.8	0.3	1	23	497	519	497	519	0.95
3	18	0.021	3.3	10.1	2.0	1	19	540	558	540	561	0.94
4	18	0.13	21	7.6	4.6	2	23	569	590	569	590	0.90
5	18	0.0062	0.99	11.7	0.3	2	23	597	619	597	619	0.89
6	18	1.3e-05	0.0021	20.2	4.6	1	23	625	647	625	647	0.96
7	18	6.9e-07	0.00011	24.2	2.4	1	23	656	679	656	679	0.95
8	18	0.027	4.2	9.8	0.3	1	23	689	711	689	712	0.95
9	18	0.00019	0.031	16.5	1.9	1	23	733	755	733	755	0.96
10	18	0.0019	0.3	13.4	0.8	1	20	761	780	761	783	0.93
11	18	0.061	9.7	8.6	2.4	1	23	803	825	803	825	0.97
12	18	0.014	2.2	10.7	0.8	1	23	831	853	831	853	0.98
13	18	1.8e-05	0.0028	19.8	0.5	1	23	869	891	869	891	0.99
14	18	2.2e-06	0.00035	22.6	0.5	1	23	897	919	897	919	0.98
15	18	0.012	2	10.8	1.0	1	23	925	947	925	947	0.98
16	18	0.00026	0.041	16.1	3.8	1	23	953	975	953	975	0.98
17	18	1.3e-05	0.0021	20.2	0.9	1	23	981	1003	981	1003	0.99
18	18	3.4e-05	0.0054	18.9	0.6	3	23	1011	1032	1010	1032	0.97

Sequence Information

Coding Sequence: ATGCGACTAGTCTTGAAAAATCCGTCGGGGGAGACAGTCACACTTACGATTGATAACGAAGAAACATTCCTTGAGCTTAAGGGCCGTGTAAAAGAAGAAGTCGGAATTGCGTTAGATCTCCAGGATTTAACGAtcaagggtaaaactattacagacGATCAGAAAGTTGTTGACTACTTCAGTAATCAAGATACAGTGGAAGAAACAAATAAGGTTGCTGAAGATGTAAAATGTGCCGTCCCCGGCTGTTATAATTCAAAGGTGAATTGCCCTGACAAAGCATTTTTTAGCTTTCCACTCGAAGAAGTCAgATGCCATCAGTGGGCACTATACTGCCAACGCCTTAGCGATCAATCTGGTAAACATAGAGTAACGTTGAATGTCAATTCGACGATATGCGCCGATCATTTCCGTAAAGACCAGTTCGTTAAAAACACGACGACGTTATTAAAACGAACGGCCGTTCCTTGTATTAAACCTGAATTGCCAGTCAGCAACGACGGCCTCAGCGGGAGAAGGAAGTCGTTGTCGACGTGTCTGTCGTCTCCGAGCATATCGATCAAAAATGACGGTCGCATATTCGACGATAACTATTTCACCAGCTTAACTAACGTGCCAACAGGTGTTTTGTGTCGTCTGTGCGCATCCACTTCCTCCGATATGCTGTTCATATTCGATGACGTCGGTAGCAAACTTTCCATATCTGAGAAAATCAATTTGTGTCTACCTGTCACGGTTCGTAACACGGATCCTTTGCCGAAACAGGTGTGTCGACCTTGCTACGATAAACTGACTGTGATTCATGATATGGTCGAAATGTGCGTGAAAGCTGAAAATAAACTGAAGGAATTAGCCAAAGAAAAACATTTCAGGACTCATGAATTGCCGCCTTCGACCCCGCGACCGAACGTTTTGGATGAAACGTCCGAGTCGGTGTCCGGTGAAAATAATTCGGAGCCAAATGTCGACGGAGAAGCCGAAGTTGAAAGCACCAGCAGTAACGCGCCGCTTATACACGAAATAACCAACAGTAATTCGTCACGCTATTGTTGTCCTTTATGTACGACCGGTAAAATGATAACGAAAAGTGGCATATACAAAACGTGTAACGTGACTTCTTCTTCGTGTGGCGGTGGTACCAAAAGTCAGTCGCATGATAACGACGAAGATAACGAAGATCCCGAACATTCGGACGACGAAATATTTTCCGCCGATGAGGAAGTGAGCGAAGGTAAAAATCTTTGGAACGGTCAGGAATTCGGTTTGAAAATACCGGATATGGATATCATGGATAATTTATATCCGGATTGTATAGTCGGAATGGATTTGGATACGATACAGGAAGAATCGTGGGAAAACGATGTGAAAATTAAATCGGAAGATAGTGCGAATAATAAAACGGATATATCGTGTAGGTTATGTGGTATGGATTTTACTAATATCGCCGCGGTTTTGGAACATTCACATAGTCACGCGGATGCCGAATGTTTCCCGTGTAGTTTTTGCGATCGTTATTATCCGACCAGAGCCGATTTAGAAATTCATTTTCAAGatcataaaataatgaaaaagaaatttgTGTCGACGACGAACAGTGGTGATACGTCGCTGCAATATTTTCAGTGCGAAACATGCGGTGCCGCATTTAAATCGGCATTTAAATTTCAAAGCCATAACTGCAGTAATAATGTGAATTCATCAAATCGTTGTTCGCATTGCAATAAATCGTTCAGATCGGAAGCGAGGTTGAAATTCCACGAACGTTTCCATCAAGGCGCGAAACCCGGTTATTGCGACGTCTGTCAAAAAACGTTCCCGGACGAAGTGAAATTATATAAACATACGGTTTATTTACATTCGCAAAGTAAAGGTCATTGTTGCGAAGAATGCGGAAAAGTTTTCAGGTCGGTCAGTTCGTTGCGATACCATCAACGTTCTCATCAGGGTGAAGACGTCATGAAACCGTACAGTTGCGATCAGTGCGGAAAGTGTTTTATCAGGAAAAGTATGCTCAGAAATCATATGTTGGCCACCCATAAGAATCTAAGTCAGGAAGGCACGTGTTTCACGTGTAAAATTTGTTTAGAAGCATTCCCTTCGACCGATTACGCCGTCTCACATATGGATATACATCATATGACCCAATGCACCGGTGAAAATACGTACAGTTTCGATATGCATCAAGTGTCGCGTTTATATATCTGCGAATATTGCGAAAGGTGTTTCACCGATCCGATGCAGTTAAGTACGCATCGTGATCAGCACGCTGCCGATCAACCGTATCAGTGTAAATTATGCAGCATGTCGTTCACGAATTATTCCCAGTTAGATGAACATAAACCGATACATAATTCAGATGATAATATGATTCAAGATTACGCTCAAGATTTCACGATTCCAGCCGTTTATATGTGCGAGTATTGTGAAAGGTGTTTCCTGAACTTTGTCAAATTAACGGAACATTTGACGGTGCATTACGGAGAAAGTCCTTACCAATGTAGATTTTGTGATTTGCGGTTCAAAACTTTCGGCGAAGTCGCCGAACATCGAGTGACTCACGACCAGTATATAGCGCCGATCGATGATTTTGATTATTATCGACCTTACGAATGTCATTACTGTCGTAAAGCGTTTGCAATCGAAGATGCTCTAGTCAAACATATCAGGATGCATACCGGTGAAAAACCGTTTATCTGCGATCAGTGCGGTAAAGGTTTCAGCCAAAGTTCCGGTTTGTATACGCATCAAAAAGTACATTCGGATGAACGGCCGTATTCGTGCTCGTTTTGTCCGCGTACGTTCAAAATCAAAGGCGATAGAGATGTCCACGTCCGTAAACATTCCGGCGATCGTCCGTACACTTGCGATTACTGCGGTAAATCGTTTATGACGCAACATGTCTACAGTCAGCATCGTAAAATACATACCGGCGAACGTCCTTACAAGTGTGATGTCTGCGGTATCGCATTTAGGCGATCTCATGTTCTCACCGTTCATAAACGTATTCACACCGGAGAGAAGCCGAACATTTGTGATATCTGTGGAAAGAGGTATAGACAGAAAGGTGATATGTTAAAACATAGGAGGATTCAACACGGTATTGTCAAGgtaaaagttcaaaaagttgaatTCTAA
Protein Sequence: MRLVLKNPSGETVTLTIDNEETFLELKGRVKEEVGIALDLQDLTIKGKTITDDQKVVDYFSNQDTVEETNKVAEDVKCAVPGCYNSKVNCPDKAFFSFPLEEVRCHQWALYCQRLSDQSGKHRVTLNVNSTICADHFRKDQFVKNTTTLLKRTAVPCIKPELPVSNDGLSGRRKSLSTCLSSPSISIKNDGRIFDDNYFTSLTNVPTGVLCRLCASTSSDMLFIFDDVGSKLSISEKINLCLPVTVRNTDPLPKQVCRPCYDKLTVIHDMVEMCVKAENKLKELAKEKHFRTHELPPSTPRPNVLDETSESVSGENNSEPNVDGEAEVESTSSNAPLIHEITNSNSSRYCCPLCTTGKMITKSGIYKTCNVTSSSCGGGTKSQSHDNDEDNEDPEHSDDEIFSADEEVSEGKNLWNGQEFGLKIPDMDIMDNLYPDCIVGMDLDTIQEESWENDVKIKSEDSANNKTDISCRLCGMDFTNIAAVLEHSHSHADAECFPCSFCDRYYPTRADLEIHFQDHKIMKKKFVSTTNSGDTSLQYFQCETCGAAFKSAFKFQSHNCSNNVNSSNRCSHCNKSFRSEARLKFHERFHQGAKPGYCDVCQKTFPDEVKLYKHTVYLHSQSKGHCCEECGKVFRSVSSLRYHQRSHQGEDVMKPYSCDQCGKCFIRKSMLRNHMLATHKNLSQEGTCFTCKICLEAFPSTDYAVSHMDIHHMTQCTGENTYSFDMHQVSRLYICEYCERCFTDPMQLSTHRDQHAADQPYQCKLCSMSFTNYSQLDEHKPIHNSDDNMIQDYAQDFTIPAVYMCEYCERCFLNFVKLTEHLTVHYGESPYQCRFCDLRFKTFGEVAEHRVTHDQYIAPIDDFDYYRPYECHYCRKAFAIEDALVKHIRMHTGEKPFICDQCGKGFSQSSGLYTHQKVHSDERPYSCSFCPRTFKIKGDRDVHVRKHSGDRPYTCDYCGKSFMTQHVYSQHRKIHTGERPYKCDVCGIAFRRSHVLTVHKRIHTGEKPNICDICGKRYRQKGDMLKHRRIQHGIVKVKVQKVEF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -