Ccar058469.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000042.1:182452-198491[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.1e-05 0.0018 20.4 5.0 1 23 147 169 147 169 0.98 2 14 0.002 0.32 13.3 1.1 1 23 175 197 175 197 0.98 3 14 0.00013 0.021 17.0 0.5 1 23 203 225 203 225 0.98 4 14 0.16 26 7.3 2.7 1 23 231 253 231 253 0.92 5 14 0.003 0.48 12.7 1.4 5 23 264 282 262 282 0.94 6 14 8.1e-06 0.0013 20.8 1.9 1 23 286 308 286 308 0.98 7 14 1.5e-05 0.0023 20.0 2.1 1 23 712 734 712 734 0.93 8 14 5e-05 0.0079 18.3 2.2 1 23 740 762 740 762 0.97 9 14 0.00018 0.028 16.6 0.4 1 23 768 790 768 790 0.94 10 14 8.6e-07 0.00014 23.9 1.3 1 23 796 818 796 818 0.98 11 14 0.0009 0.14 14.4 0.4 1 23 824 846 824 846 0.96 12 14 0.0012 0.2 13.9 2.2 1 23 852 874 852 874 0.94 13 14 7.2e-06 0.0011 21.0 0.5 1 23 880 902 880 902 0.99 14 14 0.27 43 6.6 3.4 1 20 908 927 908 929 0.93
Sequence Information
- Coding Sequence
- ATGGAAGTTCAACAGTTGGAATCAAAGATAAAAACTGAAGTTATGGATACAGAAATTGAATTGAGGGTTGAACATGAAGACTCAAACGATAAAGAAATTTTTGAGCCAGATCCGATTGTATTCGATTTCCTTTCTGTGACAATGAAACAGgaaacTGCACAGGAAGATGATGTGAGTTCAATGGAAGATAACAGCTGGTCGTCTGATACCCTGGCAAATAAGAGCATTAAAACTGAAAAGGATTCAGTCCGTTCCGAAATGGTTGATTCTAATTTAGACAGTCGTAGCGGGCAGCTGTTGTGCATTAATAAAGACGTTAGCGATCATGAAGACAGTGAATACGAAACAACCGATGTTACCATAAGTAGTGATTCAAAGTCCAGTAGCCGCCCGACCGGTCGCACGGTATCACCCGGTACCGATAGTACCACCGAACGGTTCAAGTGTAATGTGTGCCGAAAGAGATTCAATCACCGATTCAATTTGACCAATCACATGTTAATACATACCGATACTAAGCCGTATAAATGCGATGTTTGTCGGAAAGAATTCAGGTGGCAGTGGCAACTGACGTCTCACACGTCAATGCATACGAGCGTGCGGCCCTTCAAATGCAATTCGTGCGGCGACGAATTCCGACAGAAAGTGCAGCTAGCTAATCACATGTTATCGCACGCGGACGTTAAACGGTTTAAATGCGATTTATGCGATAAGGAATTCGGTTGTAAAGCGCATCTGTTGAGTCATTCGGTCGTACATAGCGATGATAAACCGGTTTTCGGATGCATTTTGTGTCCGAAGAAATACACGCGGAAACATTTGCTGAACGCTCATATGGTTTCGCATTTGATTCGATTTGAATGCGATACGTGTCGAAAAGAATTTAGATTGAAATCCGATTTGACGAGGCATATGTCATCGCATACtggtactaataataataataataatactaaatctGGTGCTAATACTGGTTCCGGTATTAGTACTGATCGTGTTTCGTGTCAAAACGAATCGTTAAATAATACAGGAAGTGTAACAACCGACTCTGTGTTATCACGTTGCGGTTCTAATACTAATACCAATTCTGGTGCTAATATTGGTTCCAGCATTAGTACCGATCGTGTTTCGTGTCAAAACGAATCGGTAAATAATACAGGAAGTGTTACAACCGACTCTGTGTTATCACGTTGCAGTTCTAATACTGATAACAATTCTGGTGCTAATATTGGTTCCAGCATTAGTACCGATCGTGTTTCGTGTCAAAACGAATCGGTAAATAATACAGGAAGTGTTACAACCGACTCTGTGTTATCACGTTGCAGTTCTAATACTGATACTAATACTAATTCTGGTGCTAATACTGGTTCCAGCATTAGTTCCGATCGTGTTTCGTGTCAAAACGAATCGGTAAATAATACAAGAAGTGTAACAACCGACTCTGTGTTATCACGTTGCGGTTCTAATACTGATACTAATACTAATTCTGGTGCTAATACTGGTTCCAGCATTAGTTCCGATCGTGTTTCGTGTCAAAACGAATCGGTAAATAATACAGGAAGTGTTACAACCGACTCTGTGTTATCACGTTGCGGTTCTAATACCGATACTAATACTAATTCTGGTGCTAATACTGGTTCCAGCATTAGTTCCGATCGTGTTTCGTGTCAAAACGAATCGGTAAATAATACAGTAAGTGTAACAACCGACTCTGTGTTATCACGTTGCGGTTCTAATACTGATACTAATACTAATTCTGGTGCTAATACTGGTTCCAGCATTAGTTCCGATCGTGTTTCGTGTCAAAACGAATCGGTAAATAATACAGTAAGTGTAACAACCGACTCTGTGTTATCACGTTGCGGTTATAATACTGATACTAATACTAATTCTGGTGCTAATACTGGTTCCAGCATTAGTTCCGATCGTGTTTCGTGTCAAAACGAATCGGTAAATAATACAGGAATTGTAACAACTGACTCTGTGTTATCACGTTGCGGTTCTAATACTAATTCTGGTGCTAATACTGATTCCGGCATTAGTACCGATCGTGTTTCGTGTCAAAATGAATCGGTAAATAATAGAGAAAGTGTAACAACCGACTCTGTTTTATCACGTTGCGGtcctaaaatatttaattgtgaCGTCTGCCGTAAGAGATTCACCACCCGGTCGAATTTGAAAAAACATTCGGTAATACATTGCGACGTTATGCCGTTCAATTGTAATATATGCTGTAAGGGATTTAACGACAGTTCGAATTTGAACCGACATTTGATGGTACATTGCGGCGTTAAACGATTCAAATGTGACGAGTGCGATAAGGTGTTCAGCTCCAAGAACATTCTGAAAAACCATGCGGTCGTACATCGCGGCGTTATGCCGTACAATTGTAACGTCTGCCGTAAAGGTTTCACGTACAGTTCGAATCTGACTCGACATTTAATGGTACATACCGGCGTTAAACGATTTAAATGTGATATGTGCGATATGGAGTTTATTAACAAGACGACTCTCGATAATCATACGGTTATACACAGCGGTGTTATGCCGTTCAAGTGTGATGTTTGCGATAAAGAATTCAGTTGCCAAGAATATCTGAGGAGGCACGTCGTTTTGCATAACAAAGCGAAGCTATTCAAATGTAACGTCTGCGATAAGGAATTCGTTCTCAAGGTGTATTTAAATAGTCATATGATGGTACATAGCGATGCTAAGAGATTTAATTGCGATTCGTGTCAAAAGGAATTCAAATGGAAAACTCAGCTGACCAGGCACAAGTGTTTGCCACAAAGTGGTGCCAAAATGTAA
- Protein Sequence
- MEVQQLESKIKTEVMDTEIELRVEHEDSNDKEIFEPDPIVFDFLSVTMKQETAQEDDVSSMEDNSWSSDTLANKSIKTEKDSVRSEMVDSNLDSRSGQLLCINKDVSDHEDSEYETTDVTISSDSKSSSRPTGRTVSPGTDSTTERFKCNVCRKRFNHRFNLTNHMLIHTDTKPYKCDVCRKEFRWQWQLTSHTSMHTSVRPFKCNSCGDEFRQKVQLANHMLSHADVKRFKCDLCDKEFGCKAHLLSHSVVHSDDKPVFGCILCPKKYTRKHLLNAHMVSHLIRFECDTCRKEFRLKSDLTRHMSSHTGTNNNNNNTKSGANTGSGISTDRVSCQNESLNNTGSVTTDSVLSRCGSNTNTNSGANIGSSISTDRVSCQNESVNNTGSVTTDSVLSRCSSNTDNNSGANIGSSISTDRVSCQNESVNNTGSVTTDSVLSRCSSNTDTNTNSGANTGSSISSDRVSCQNESVNNTRSVTTDSVLSRCGSNTDTNTNSGANTGSSISSDRVSCQNESVNNTGSVTTDSVLSRCGSNTDTNTNSGANTGSSISSDRVSCQNESVNNTVSVTTDSVLSRCGSNTDTNTNSGANTGSSISSDRVSCQNESVNNTVSVTTDSVLSRCGYNTDTNTNSGANTGSSISSDRVSCQNESVNNTGIVTTDSVLSRCGSNTNSGANTDSGISTDRVSCQNESVNNRESVTTDSVLSRCGPKIFNCDVCRKRFTTRSNLKKHSVIHCDVMPFNCNICCKGFNDSSNLNRHLMVHCGVKRFKCDECDKVFSSKNILKNHAVVHRGVMPYNCNVCRKGFTYSSNLTRHLMVHTGVKRFKCDMCDMEFINKTTLDNHTVIHSGVMPFKCDVCDKEFSCQEYLRRHVVLHNKAKLFKCNVCDKEFVLKVYLNSHMMVHSDAKRFNCDSCQKEFKWKTQLTRHKCLPQSGAKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -