Basic Information

Insect: Catonia carolina
Gene Symbol: -
Assembly: GCA_035578175.1
Location: JAQMRL010000001.1:205086616-205090154[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00067 0.11 14.8 1.4 2 23 25 46 24 46 0.97

2 18 6.2e-05 0.0098 18.1 0.4 2 19 49 66 49 68 0.96

3 18 2.6e-05 0.0041 19.2 0.3 3 23 80 101 79 101 0.97

4 18 0.013 2.1 10.7 0.2 2 23 110 132 109 132 0.92

5 18 0.0051 0.82 12.0 0.3 2 23 136 158 135 158 0.93

6 18 2.8 4.5e+02 3.4 1.9 1 23 164 184 164 184 0.73

7 18 0.0032 0.51 12.6 1.2 2 23 190 212 190 212 0.97

8 18 0.00037 0.058 15.6 0.7 1 23 217 239 217 239 0.97

9 18 1.7e-05 0.0027 19.8 1.7 1 23 245 268 245 268 0.98

10 18 0.027 4.3 9.7 3.1 2 23 271 292 271 292 0.97

11 18 8e-05 0.013 17.7 0.7 2 23 296 318 295 318 0.95

12 18 0.76 1.2e+02 5.2 9.5 3 23 327 348 324 348 0.90

13 18 0.025 4 9.8 0.1 1 23 355 378 355 378 0.84

14 18 0.00025 0.04 16.1 1.9 1 23 385 408 385 408 0.97

15 18 4.2e-05 0.0067 18.6 0.2 2 23 441 463 440 463 0.94

16 18 5.2e-05 0.0082 18.3 0.2 1 23 470 492 470 492 0.98

17 18 0.00081 0.13 14.5 1.0 1 23 498 520 498 520 0.98

18 18 0.2 32 7.0 1.6 1 11 526 536 526 547 0.79

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00067	0.11	14.8	1.4	2	23	25	46	24	46	0.97
2	18	6.2e-05	0.0098	18.1	0.4	2	19	49	66	49	68	0.96
3	18	2.6e-05	0.0041	19.2	0.3	3	23	80	101	79	101	0.97
4	18	0.013	2.1	10.7	0.2	2	23	110	132	109	132	0.92
5	18	0.0051	0.82	12.0	0.3	2	23	136	158	135	158	0.93
6	18	2.8	4.5e+02	3.4	1.9	1	23	164	184	164	184	0.73
7	18	0.0032	0.51	12.6	1.2	2	23	190	212	190	212	0.97
8	18	0.00037	0.058	15.6	0.7	1	23	217	239	217	239	0.97
9	18	1.7e-05	0.0027	19.8	1.7	1	23	245	268	245	268	0.98
10	18	0.027	4.3	9.7	3.1	2	23	271	292	271	292	0.97
11	18	8e-05	0.013	17.7	0.7	2	23	296	318	295	318	0.95
12	18	0.76	1.2e+02	5.2	9.5	3	23	327	348	324	348	0.90
13	18	0.025	4	9.8	0.1	1	23	355	378	355	378	0.84
14	18	0.00025	0.04	16.1	1.9	1	23	385	408	385	408	0.97
15	18	4.2e-05	0.0067	18.6	0.2	2	23	441	463	440	463	0.94
16	18	5.2e-05	0.0082	18.3	0.2	1	23	470	492	470	492	0.98
17	18	0.00081	0.13	14.5	1.0	1	23	498	520	498	520	0.98
18	18	0.2	32	7.0	1.6	1	11	526	536	526	547	0.79

Sequence Information

Coding Sequence: ATGTTTAAGGTGGATAAGAAACGGAGCTGCAGAAGTCAAGAGAAAGCGAttgataataaaaagaaaattctgaAATGTCATATCTGTGGATTAATGTTGAAAACGAATCTATTATTCAAAAGACATATTTCAGTTCATGAAAGAACTTGTAATATATGTTCGAAAACATTTCCGAGTAAAAGAAATCTTATCCGCCATAACGAATGCATTCATCCAAAAAATCTGGATTACAATCTTTGTACTATTTGTGGGAAATCTATTAAACACGCCGATGGTTTAGAAAAACACATGCAAATTGTTCACAACAGAAGTTCAAATGGGAAAATAAGTTGCGATATTTGCGGTGTAATTGTCGAAGGTAGATATAATTTGAAAAAGCATAGACATGCCGAACATTTATCAATATCTTGTCCCTTATGCGATCAAGTTATCAAGAAAAGATCTCTTTTAAAATCTCATTTCAAAGAGATTCATAATACGGAAACACCGTTTGTTTGTGAACTTTGTGGAAAGAACGTTTTTTCGATTAAATCTCATATGAGAGTCAGCCATAGGGAAGAATCTGCGACATGCGAAATTTGCGATAAAGAATTTCTGAACAAAACGCGTCTGTTTCTTCATATACGTAGACAACATAAAACACGGGATCATGAATGTAAAATTTGCGGTCTATCGTTTTCATTTGAATACATTTTAAAGAATCACATTCTTGTTCACGATAACGAGAAACATTACGAGTGCAATTTTTGCGATCAGAAATTTAAACAACCTCGCCGGTTAAGAGTTCATATTCAAACTTATCACGaaaGGAAATGTGATAAATGTGGATTGATATTTGAAGATCATAAAGTGTTTAGAAGACATAAATCAAGTCATGTTGACAAAAGTTGTGATGTATGTGGAAAGACATTTCCCAAGAGATTCGCTCTTGTGAGACATAAAAAATATGTTCACACTGTTAATCCAGAACATAAATGCTGTGAAATCtgtcataaattatataaaagtgAACAACACCTTAAAATTCATAACAAACGTATGCATAGTTCTAAGGAGGAAATGTTTCCTTGTGACATCTGTGATAAAGTGTTTATGATTAAGAGAAATGCTGATATTCATAGATCTAATGTTCATGCTGTCGATCATAGTTTATTTCCTTGCGATAGATGTGATAAAGCATTTAAAAGTCGACTTTCATTTTATAATCATACGAGAAAAGTTCATAAAAATTTTGGTTGTATTCTTTGTGCATTATGcggtaaaaatgttaaaaactatgATGGCCATATGAAAAGTTCCCATGCGGAACTCACAAATGTAACTTGCGATATATGTGGAAAATCGTATGCTAATGAAACATCATTAAAGTCTCACAAAATATCAGTTCATACAAATatggtaaaaaaatttgtttgcaaTATATGCGGGGCATCTTTTAAATTGTCTAGTATTCTTAATAGACATTTGAAAGTGcatgaaaatgaaagaaattttaaatgtgattTATGTGGAAGTGCTTTCAAAACGAAAAATGTTTTGTACACGCATAGCAGAGTCCATACCGGTTTGGAACCATATAAGTGTTTGAAATGCGGGGAATCATTTCGATGGAAAGGAACTTGTGAGAAACATGTATCAACTTGTTCCGGTTCGCGATTGGAatctttttaa
Protein Sequence: MFKVDKKRSCRSQEKAIDNKKKILKCHICGLMLKTNLLFKRHISVHERTCNICSKTFPSKRNLIRHNECIHPKNLDYNLCTICGKSIKHADGLEKHMQIVHNRSSNGKISCDICGVIVEGRYNLKKHRHAEHLSISCPLCDQVIKKRSLLKSHFKEIHNTETPFVCELCGKNVFSIKSHMRVSHREESATCEICDKEFLNKTRLFLHIRRQHKTRDHECKICGLSFSFEYILKNHILVHDNEKHYECNFCDQKFKQPRRLRVHIQTYHERKCDKCGLIFEDHKVFRRHKSSHVDKSCDVCGKTFPKRFALVRHKKYVHTVNPEHKCCEICHKLYKSEQHLKIHNKRMHSSKEEMFPCDICDKVFMIKRNADIHRSNVHAVDHSLFPCDRCDKAFKSRLSFYNHTRKVHKNFGCILCALCGKNVKNYDGHMKSSHAELTNVTCDICGKSYANETSLKSHKISVHTNMVKKFVCNICGASFKLSSILNRHLKVHENERNFKCDLCGSAFKTKNVLYTHSRVHTGLEPYKCLKCGESFRWKGTCEKHVSTCSGSRLESF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -