Basic Information

Insect: Catonia carolina
Gene Symbol: zfh1
Assembly: GCA_035578175.1
Location: JAQMRL010000004.1:20971122-20988827[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.1e-05 0.0049 19.0 1.7 1 23 190 212 190 212 0.97

2 15 0.00039 0.063 15.5 1.5 3 23 220 240 219 240 0.99

3 15 9.2e-05 0.015 17.5 0.1 1 23 359 381 359 381 0.98

4 15 0.054 8.6 8.8 0.0 1 23 387 410 387 410 0.94

5 15 1.8e-05 0.0028 19.8 3.2 1 23 432 454 432 454 0.97

6 15 0.001 0.16 14.2 0.2 2 23 469 490 468 490 0.96

7 15 3.6 5.7e+02 3.0 2.3 1 23 512 535 512 535 0.95

8 15 0.018 2.9 10.3 4.7 3 19 544 560 543 564 0.95

9 15 0.0005 0.08 15.2 4.1 1 23 570 592 570 592 0.98

10 15 0.0074 1.2 11.5 0.3 3 23 599 619 597 619 0.96

11 15 8.2e-06 0.0013 20.8 1.1 1 23 631 653 631 653 0.98

12 15 0.006 0.95 11.8 0.2 3 23 661 681 659 681 0.97

13 15 1.3e-05 0.002 20.2 0.2 1 23 687 709 687 710 0.96

14 15 0.00094 0.15 14.3 0.8 1 23 721 743 721 743 0.95

15 15 5.3e-05 0.0084 18.3 0.1 3 23 1051 1071 1049 1071 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.1e-05	0.0049	19.0	1.7	1	23	190	212	190	212	0.97
2	15	0.00039	0.063	15.5	1.5	3	23	220	240	219	240	0.99
3	15	9.2e-05	0.015	17.5	0.1	1	23	359	381	359	381	0.98
4	15	0.054	8.6	8.8	0.0	1	23	387	410	387	410	0.94
5	15	1.8e-05	0.0028	19.8	3.2	1	23	432	454	432	454	0.97
6	15	0.001	0.16	14.2	0.2	2	23	469	490	468	490	0.96
7	15	3.6	5.7e+02	3.0	2.3	1	23	512	535	512	535	0.95
8	15	0.018	2.9	10.3	4.7	3	19	544	560	543	564	0.95
9	15	0.0005	0.08	15.2	4.1	1	23	570	592	570	592	0.98
10	15	0.0074	1.2	11.5	0.3	3	23	599	619	597	619	0.96
11	15	8.2e-06	0.0013	20.8	1.1	1	23	631	653	631	653	0.98
12	15	0.006	0.95	11.8	0.2	3	23	661	681	659	681	0.97
13	15	1.3e-05	0.002	20.2	0.2	1	23	687	709	687	710	0.96
14	15	0.00094	0.15	14.3	0.8	1	23	721	743	721	743	0.95
15	15	5.3e-05	0.0084	18.3	0.1	3	23	1051	1071	1049	1071	0.96

Sequence Information

Coding Sequence: ATGGCTGATGTCTCAACTGGTCAAATGTCAAGTATCAAGTTGGAATGGGTACCGACAGAACCATCCGGCGGTACCCCTCCTCCACATCCTGTTCAAGACAGTAATCTATTAATAAACCAGGAACCGTCGGCACAACATTTAAACCCACAGTCATCTCCGCAACAGACTATCACATTACCgcaacaacagcagcagcagcgTGATGTTATTTGCGGCGATGCAACTTGGTTAGAAAATACAGCTGCCGTTACTACTATTGATGTGAATAATATTGAATCAGTTAAAGAAGAAATTGTTAAATCGCATGTCATGAATAATGGTGATATGGATCACGAGAACCCAAACAATCCGGTCTATGAGGAGGTTATATATCCACAAGACACAAGTTCAACAGTTGTTCAAGATTTTGTCGAAATACAAGTTACAGAAGAAGAAGTTGTTAGCGAATGGGACGGAATCCAGTCGTCTTCAACAGTGGTGATTGGAGATACCAAGGAGCCGAAACAGGAAGATGACATTGAAATACCTTTACCAGAAAATCAAGATTTGTACTCACAACAACACCCTTACCCATGTGATTTCTGTAGCAGAAGATTTAGTAAAAAATCGACGCTAATGAATCACATGGTATCTCACCAATCAGAAAGACCTCATGGTTGTAACCTGTGTGGTGCACGTTATCGCCGCAAATGTGATCTTGTCAACCATATGAAAATACACGCGTATGCACCTGTAAGAAGTACTGTTGATGACGACGATGACGAGGAATTACCTAGAATCAATCAAGTTGCTGTCGATAATTCTAAAGGCAGAAGAAAAAAGGCGCAGTCATTAGTACCGAAGAAAATGAATAATCTGAGTCCAGATGACCAACAAAATAATGATCTTCGTGGCgattataaaaatgataaaaaattgggCAAGAATCGACTTATGGGCAAAAAAGGAAAATCTTCGCTGAATAAATCATCCAGTTATGTCGATGAAGATATGCGATTGTTAACGGAAATGTCGCAGAATGTCGATATCGTCAACATGGTACCACGTTGGCCTATCGTCGATCAAAGTCGACCTTATGTTTGTCAACATTGCGGGGTCGGTTTCGCGAGAGAAAAAGCATTAGCATCGCATGCGAGAATGCACGCCGGTGATTCACCTTTTGAATGCGATGTATGTGGTGAAATGTTTTGGGATATCACTATGCTGCGTGAACACGCTCGTGCTAAACATCCTCATCTTAGCGATAACGCTCCAACTGGAACTATTTATACCGGCGATGATAGATTTGGAAATTTCTGTTGTGAAACTTGTGGAACTGCTTTCAACAGGCTTGATCTGCTGAAACGACATCGCAGGAGCCACGTAAAAGCTGAACCTCAAGAGGATTCGGGCAGCGTAGGGTTAGTGTGCACAACATGCGGTCTGTTTTTTGAGAATCAAATGGAACTCCAAGCACACAATGAAACGCATAGCAGTCAACAATCGCTTAATAATTCAGCATCACAACATTCAACCCAGTCCAGTTCCGAATCGCATCGATGTGTCGTTTGCGGACACATCAGCGAGTCTATATCTGAAATGAGCGAACATGTACGCCATTATCATGGCGATAATAATCAGGAAAATTGTTGTAATATTTGTGGAAAGACATGCAAAGATAGAAGATCGTTATTAAAACATTCGTGGGTGCATTCTGAAAACAGATCGTTCCCTTGTCAATCTTGTAATAAACGTTTCCATAGTCGAGCTCGGCTTAGAAGACATATGATGTCCCATAGAGACAAAGCTGTAAATTGTTCCGACTGCGGTGAAGAGTTTCCTGATGGCCGCGCACTAATGAGCCATCGTCACAGCCATAATACGTCAAACAGCAACCAACCAATACGGTCGTTTCCGTGCCATGACTGTGGCAAAACGTTTGGATCTCGTTCATCTCAACAGATCCACGTTCGTATCCATACTGGTGAACGACCATACGGTTGCCGTTTCTGTTGGAAAGCATTTGCCGACGGTGGGACCCTTCGTAAACATGAGCGTATACATACTGGTGAAAAACCTTACGTATGTCCTGTTTGTCCAAAAGCATTTAATCAACGGGTTGTGCTGCGGGAACATATACGTGCTCATCATTCAGGGTCAGATTCGAAGGTGAACTCATGTTACGAGTGTAAAGTGTGCGGTTACCTATTTGGATCTTCGAGTGAACTGTGTTTACATTTAGTACAGCATAGCGATGAAAATACAGCCAAACATAGGCTACCCACTGTTGGACCACGTAAATACAAACGAAGACGTAAATTACCACCTCACGATACGACCAACTTGCTTTTACAAGATGAACAGGATCCAGACCAAGAAGGAGATTATTTTTCTGATACGAGCGATTCACAAGtggaaaagaagaaaatttataaaaggaaaataaagtaCGAGTCAAGTAGAGACGATTatgataatgttttaaaattatctgAGTCGGCTGTTGAAAATATTAATTCTATCGTCAATGAAGAAGAACAGAAAAAGTTGAGATTAGAAAAAGTCGCTAGGAAAAGTAAATTGAGAGCGGCAAATCAAAAATTAGCTCGTAATGAAAAACGCGCTAAAGCCGCGAAATTAATGAACAGTACAAGTTATGCATCAAAGTACGTAGTATCGAGACCAGATGACGATAAATTATCTATGTCGCCACCGAGCAATTGTGATACATCACCTGTGAGACCAAGATTTAAAAACGTTTACCAATCAGATGAAATCGAAATGGCAGTCGATGCAATAGTTAACGGTGCCGATTCGCGTAACCGCCCGCGAACGAAAAACGTTAATTATCACAATTTAAAAACAGGTACCAAATTAGAACCAGCGATGTTTCCGAATAAAACGAAATCGTCTAAAAAACCACGCAGTCGTAAAAATTCATCAAGGAAAGAATCGACGAAATCAAAAATCCGTAACGCAAATGACGACGACGATTCGTTGGTGACGAAAATGGAACCGAACGTAGAACAAGAAAATATTCCAGTCAATGTTAACTGTTTAGAAGAAAAAGTCGAATGTTCTGTCGTACCCAGTTTAGGTGTTAATGTTAAATTGGAACCAGTCGCCGATTGTATGGTTAAGACGGAAATAATCACAACGGATTTATTAGCTTGTGAAATGTGTAGTGAAATGTTCTCTGACCGTACTGATCTTTTGAATCACATCAGAGTGCATATATAG
Protein Sequence: MADVSTGQMSSIKLEWVPTEPSGGTPPPHPVQDSNLLINQEPSAQHLNPQSSPQQTITLPQQQQQQRDVICGDATWLENTAAVTTIDVNNIESVKEEIVKSHVMNNGDMDHENPNNPVYEEVIYPQDTSSTVVQDFVEIQVTEEEVVSEWDGIQSSSTVVIGDTKEPKQEDDIEIPLPENQDLYSQQHPYPCDFCSRRFSKKSTLMNHMVSHQSERPHGCNLCGARYRRKCDLVNHMKIHAYAPVRSTVDDDDDEELPRINQVAVDNSKGRRKKAQSLVPKKMNNLSPDDQQNNDLRGDYKNDKKLGKNRLMGKKGKSSLNKSSSYVDEDMRLLTEMSQNVDIVNMVPRWPIVDQSRPYVCQHCGVGFAREKALASHARMHAGDSPFECDVCGEMFWDITMLREHARAKHPHLSDNAPTGTIYTGDDRFGNFCCETCGTAFNRLDLLKRHRRSHVKAEPQEDSGSVGLVCTTCGLFFENQMELQAHNETHSSQQSLNNSASQHSTQSSSESHRCVVCGHISESISEMSEHVRHYHGDNNQENCCNICGKTCKDRRSLLKHSWVHSENRSFPCQSCNKRFHSRARLRRHMMSHRDKAVNCSDCGEEFPDGRALMSHRHSHNTSNSNQPIRSFPCHDCGKTFGSRSSQQIHVRIHTGERPYGCRFCWKAFADGGTLRKHERIHTGEKPYVCPVCPKAFNQRVVLREHIRAHHSGSDSKVNSCYECKVCGYLFGSSSELCLHLVQHSDENTAKHRLPTVGPRKYKRRRKLPPHDTTNLLLQDEQDPDQEGDYFSDTSDSQVEKKKIYKRKIKYESSRDDYDNVLKLSESAVENINSIVNEEEQKKLRLEKVARKSKLRAANQKLARNEKRAKAAKLMNSTSYASKYVVSRPDDDKLSMSPPSNCDTSPVRPRFKNVYQSDEIEMAVDAIVNGADSRNRPRTKNVNYHNLKTGTKLEPAMFPNKTKSSKKPRSRKNSSRKESTKSKIRNANDDDDSLVTKMEPNVEQENIPVNVNCLEEKVECSVVPSLGVNVKLEPVADCMVKTEIITTDLLACEMCSEMFSDRTDLLNHIRVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -