Ccar042899.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000008.1:57406841-57438313[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.00016 0.026 16.7 1.5 1 23 154 176 154 176 0.97 2 28 1.2e-05 0.002 20.3 3.3 1 23 186 208 186 208 0.98 3 28 0.0039 0.62 12.4 0.7 1 23 862 885 862 885 0.95 4 28 0.019 2.9 10.3 1.2 2 23 892 914 891 914 0.95 5 28 0.005 0.8 12.0 0.5 1 23 1007 1030 1007 1030 0.93 6 28 0.00026 0.041 16.1 0.8 1 23 1070 1093 1070 1093 0.95 7 28 0.15 23 7.4 2.2 3 23 1101 1122 1099 1122 0.95 8 28 0.0029 0.46 12.8 0.7 1 23 1134 1156 1134 1156 0.98 9 28 0.0034 0.55 12.6 0.3 2 23 1209 1231 1208 1231 0.94 10 28 0.046 7.2 9.0 0.5 3 23 1281 1303 1280 1304 0.89 11 28 0.04 6.4 9.2 0.1 2 23 1313 1335 1313 1335 0.96 12 28 0.037 5.8 9.3 0.5 1 23 1341 1364 1341 1364 0.94 13 28 0.0002 0.031 16.5 3.2 1 23 1372 1394 1372 1394 0.97 14 28 0.78 1.2e+02 5.1 0.1 2 23 1429 1452 1428 1452 0.95 15 28 0.00087 0.14 14.4 0.9 2 23 1456 1478 1455 1478 0.95 16 28 0.0053 0.85 12.0 3.1 2 23 1485 1506 1484 1507 0.95 17 28 0.034 5.4 9.4 5.7 1 20 1527 1546 1527 1548 0.93 18 28 0.0015 0.24 13.7 0.4 2 23 1561 1583 1560 1583 0.96 19 28 8 1.3e+03 2.0 1.5 3 23 1618 1640 1616 1640 0.93 20 28 0.1 16 7.9 0.8 2 23 1648 1670 1648 1670 0.97 21 28 0.036 5.7 9.4 0.2 1 23 1676 1699 1676 1699 0.94 22 28 0.001 0.16 14.2 0.2 2 23 1708 1729 1708 1729 0.97 23 28 0.0074 1.2 11.5 1.8 1 23 1734 1756 1734 1756 0.96 24 28 0.0016 0.25 13.6 0.6 1 23 1840 1863 1840 1863 0.95 25 28 0.0084 1.3 11.3 5.5 2 23 1970 1992 1969 1992 0.95 26 28 3.4 5.3e+02 3.1 0.2 2 23 1999 2021 1998 2021 0.90 27 28 1.1 1.8e+02 4.6 2.1 1 23 2032 2054 2032 2054 0.96 28 28 0.031 5 9.5 0.1 1 23 2066 2089 2066 2089 0.95
Sequence Information
- Coding Sequence
- ATGGGGGACATAGAAGAAGATAAGTTTGAAGCGCTTTGCCGTTTGTGTGCATCGTACGATGCTGTTCAGATGGATATATTTGGAGAAAAAGGACGAGAGAGGAACATCATTGAGAAGATTCATACTTGCTTACCTTTCcagGTTAAGGAAAGAGATTTATTGCCTAAGTCAATTTGTTACCGATGTATGTATAATTTGGAAAACTTTTATGATTTTCGAAAAGgatgtgttgatgctgtaaataAACTGGAAAAGTTTATTGCATTGTCTGGTCGTTTGAAAATTAAGGATGAATATGGCGAATATGAAGAATCAGCCTCTGCTTCCATGGCAACTGATGATGAAGATATACCTAATCCAGCAGACTTTTTGGAAGCATGTTTGGTGGGTGAACCATCTGGTAATCAATTAGATACAAAGGATGGTATATTGCAAGAATATGAATGTCCAGTTGACGACTTTACTTGTACAACCTGTGGTAGAACTTTCAATTCAAGGGGTGCCCTTACGCTTCATTCAAAgtaTCATACTGGTGAATCTGATCAAAGCCAGTTATTTACATGTCATGTTTGCGATAAAGTATTTTCAAGTAAAGGTCATTTAGCATCGCACAGTAAAGTACATATCGGAGATTTGACAGAAAGGCATCCTCCTCCGGATCCAAACGCACCAATTCTACCAAGCTTGATTGGAACTAGAGGTGGTAAAAGAACTTCAGATGGTCAACTAAAGACCGAACCAGTTACTGAAGCTGAAACTTATATAGAGTCTTCAGAAACCCATGCATTGTCACCATCACTTCCGCCAGAATTATTCCAGCCTGGGCCATCAAAAGTGAAATCCAaaacagatacagaaaaaacagaatattgttCTAGTAATCCATCTAATCTCTTTAAACACCCGCCAGAGATGTTGTCAACGGTTTACTCTGCATCAGAACCAATAGAATTTCTGGAAGAAAGTGAGGAGGAAATGCTTCAGTCTTCAGATGATTTTTCTGGAGAAAGTGAGATGGAAAACAGTTCTGGAGAGAAAGATGAAGACAAACTTCTGAACACATTCAGTAACATACAGCAACAGAACACATTGACTGTTAATAATAGAAACTGGACAGCAGACAGACCAGCCAAAGAtccaataatatttaataaagaaaCTGGACTATCACAGCAGTTTGATGGAGATCGgccaattgatatttttaaagttgTGTTCGCACAAACTGTTATTGACTTGACAGTGACTGAGACAAATAAGTTTGGTAATATGCTCAAAGAAAAATTGATAACACCACAGGCTAGAATAAAATATTGGAAACCAGTTACGGCAGAAGAGTTTCTAACTTGGTTAGGGCTCCTTTACCACATGGGAACAATTCCTCTTCAGAGACTGAGTGATTACTGGAATACAAATTTTCTGTTTGGTATCCCTGTATTTAGAGCATGCATGAGCCGCGACAGATTTTGCAGCATATTGCAATGTTTACACTTTAACGACGCCCCTCCGACAGCGACTGATAAACTTATACCAATTCGACCACTACTTGACACTTTTAATCAGACTATGGATACAATTTACAAACCTACGAAACAATTATGCATTGACAAATCAATGTTACTTTGGAAGGATAGACTTGTATTTCCCGTGTACCTAAAAGAGAAGAAACGTAATAATGGGACAAAATTATACATGTTGACACAACCGAATGGGTTAGTACTTCGTGTTATTGTATACGCTGGGGCCTCTGATTCAGAAGGTGGACACGAACATGCTGACAAAGTTGTCCATAAGTTGATGGAAGGCAAGCTTGATTCTGGGTATTCCTTGTTTATTGATAACTACTACAACAGTGTGAACCTTGTGCACCAACTTTTGAAACGGAAGACTTATGTCACAGGAACAGTAAGACCTAATTGCAAAGGAAATCCACCACCTATCACCCAGGCTAAATTAAAACCCCATAAAGTTTCATCACTCTTTTCAGAGGATGGTGTGTGCATTTTCAAGTGGCATGACCAGAGAGATGTACTGATGATCAGCTCTGAATTCGGAGCAGATATGGTCAAAACCACAAATCGCAAGGGAACACCAGTCTCCAAGCCAGAAGCTGTTGTGGAATACAACCAGGCGATGGGTGGAATTGACCGTATTGATCAAATGATGGCATATTATCCCATCGAAAGAAAAACGTTGGAATGGGTTAAAAAGTTGGCTATTCACATATTTCACCTAAGCCTTATCAACAGTTTTTTCCTGCACCAAAAACATTTTCCttccttaaaaataaaactgcatGAATTTCGTTTATCCATTATAACAGCTCTCGTTTCTCCATCGTACAGACCAAAAATGATTAAAAACCCCATCGAACGTAAAAACATACTGGACGAACATATACCTAAACAGTATGAAGTGAAAGAGGGAGAGAATCGTAAAACGAGAAGACGGTGCCGGCAGTGTTACAAGATAAAAATTCGCAAGGACACAactttcttctgtccattttGTCCTGGTTTTCCAGCGCTTTGTGCAAAACCTTGTTTTCAAGAATACCATGAGGAAATGTTTGAAAAagtACCTTTCAAGTGTGATTTATGTGAAAAGTCATATTCCATGGCAAAGCACCTTTGGGGTCATGTCAGTGTCAGTCATAAAGGTGATCCAAAAGTTTCATGCCAGTTTTGTTCTAGAACATTTTCCACTATCGCTAATCTGGATGATCATAAAAAATCAAAACATGCTTCTGAAATAAGTGCACTTGCTGCTGAAAAtGTGGATACAACAGAAATCAAGACTGACTTTAGATCTGATGATGAAGATGATTGTGATGAGGACGATGAAGATGAGGAAAATAAACAATCGAATGAAGAAACAAGTAACCAGGAATTCCTGAGTCGAAGAAGAAAAAGTTCtgcttcaaaaaaattaaaaagaaatcataGTGCGATTGAAGATGACAAATCCAGTGATATTACTAAAGATGGCAGCAATAGCAATGGCACTGAGAAATCGACGTTTTCGTGCCTACTTTGTGataaaagttttaatgaaaaGAACTTATTACTTGATCATCTGTCAGAAAGTCATGGTATTGAACCAGGAGATATTACACTTAGTCAGTACATGGATGaatcaaattgtgaaaatttgGAGAACGAAGATGATTATGTCATGGCTGAAAGTATGGTGGAAACTGAAACAGTATTTTGTTGTGAAGTCTGTGGAAGAGATTTTAACGATCGTGCTAGTTTGTGGTTGCATATGCTTTACTCGCACAGGGAAGAAGCAGCTACAGCATGTGGTCTGTGTTTGAGAGTTTGTTCTGATTACAGTAGTCTGACAGAACACATTCAAAATTGTCATCCAAAAGATCGTTTGAAATCTGATCAAAGACGTTACAGCTGCCAAATTTGTGGGCGACAGCTAGATTCTAAGAAAAAATTACTGACGCATGTTAAGATTCACAATCTTTATGATAATACTGGGCAAGTTGTTGATCCTGAATCTGTTATCATTATGAATTCAAAACTTAATCAACAGAATTTACAGTCTATTCTGAAAGAAAGTAGTgaatatgaaaattccatttttgaaagtttaaaagaTGATGGCCATGTAATGAGTTGTGAAATATGCTTCAAAGTGTTTCCTAATGAAGAGAAATTGGTTAAACATAAACAAAATGCTCATAGAAATTCACAGGGTCCTAATAGTGTAAATAGTTCTACcacatattatttatatttttcttgtgaGCTGTGCGGATTAGCTCATTCAACACGTACTGAAAGATGGCGACATGTGTTTTCATGCCATGCCAATGAACCATCACTTTTATGTGAAGAAGAAAAATGTGGAAAAGTTTTTCCAACAAGATCTTTAAAGACTGAACATGCTGCAAGTCATCATTCTCTTCAAGGGGAAATTCCTAATACTTGTGAAGTTTGTGGTAAGCTTTGGGCAACAAGAGTTAACTTTTGGAAACATATGATGAGTGTTCATGCAGATTGCCTACCATTTATCTGCGGTGTTTGCCTAAAAGTTTTCTGTTCGGTCGCTGatctttcaactcatgttaaagATCGGCATGCACCTTTAACCGAAGGAGACTTTTGCTGTGATATTTGTGGTCGTCCGTATTCAAACAAATCTAAAATGTCTCGTCATAGAAAGATACATGTATTACCAGAATCTGAAGGTGGTTTACCTCCTGGTCACGAACTAGAAGTTTTAACACCCATTTCAGATAAACCGTCTTCTATAGATTTTGGTGATCAGTTAAAATGTAGTTTGTGTCCAGAAGAAGAATTTACAGTCTTAGAAGAATTGTCACAACACAGGAGGTCCGTACATAATCTTGTGCCATGTGATCTATGTACAAAATTCTACGGACGATCATCTCATCTTTGGAAACATGTTAATAAAATCCATAAAAATCATCCAGACATCACATGTAACATATGTTTTCGTACGTCTGCTTCTAGAGGTCATCTTGCAAATCACATGTCAAAACATCACAGAGAGGAATCTCAAAACTATGTGGACATTAGCGAACTATCGAATGAAGAAACTATACATACatgtgaaaaatgtaaaaaagtttttagaaaGCATGTGCTATTAAGAAAACATTCAAAACACTGTGTCGGCCCAAAAGTGACAGGCCCTGTTCCTTCTCCATGTGATCGAtgctcaaaaatatttgattcTCCAGTTCTACTTAGGAAACATAAACGTATATCTCATTTGCTGTTTAAATGTGAGATTTGTGAAGATGTCGCACACGATTCTCGTATAGAATTAATGGATCATATCAAAGAGGTTCATGCTGGTCATCCAGATTTGGCATGTAATTTTGAAggttgtaataaaatgttaaggTGCAAAGCTGATCTTGATAAACATAAACGAGAGCATCGGTTTAGTCGGATGCCTCCAACTTGTGGTTTTTGCGGCGAGTTGACAcccaataaaataaaacttagaaaTCATCTGAAAACAAAACATCCCCtattaactaaatatttatgCGCTGTATGCTTGATAGAGTTCAAAGATTTTGATGAGTTAAGAAAACATGTAAATTCGAATCATAAAGCGATCCTCACTAAACCGAACGTTTGTTCCATCTGTGCTCGTACATATGCTAATAAAAGTAAGGTACTTGCACACATCCGTACTCATGGTGATCAGTTTTTCCCTTGTAATAAGTGTTTGAAAATATGTACCAAAGAAGAACAGTTAAAACGACATTTAGAAGCACATATGGAAGAAAATTCAGAAGATGAAATAGAAGAGGAGGAAGAGGATGATGAGAGTCAGACTATCGAGACTGAAACAAACAACGATGATAATGAAAATACCGGCAAAACAGTTGTAgtcgatgatgatgatgaatcaaaaaatgaTATTATCGAAATAAAGTCGGAAAATTTAGCTAATGATGTACCTGATGATATAATAGATAATGATCTTGAAGAGATACCTTCAAAAAGACCTAGAAGATCATACACTCATGCGTGTTCGGCATGTTCAAAAACATTTTCAAGTGCGGGTGAATTATTAGATCATACCAAAACTGAACATAATGAGCTGTTATGTGCTTGTGGTAAAATAAGCGACAATATCGACAGTCATAATACTCACGCGAAAAAATGCGTGTCGGCTAATAAAGcagaaacgtttaaaaaattagGTCTAGTTAACAATAAGACTGATTCTACAAAGAATAGTTTAAGTCctgataaaaaaatgaagtttatgGGTAGTAATGATCAGAAAAGTAACTCTGTTTATTTGAATGTCATCGATAATAACATTCCTGCTAACGATAAAAGTATGGACAAAAGTACGCCACGGCAGCGTGAAGTGCGTAGAGTTTATAAAGTTGATGACGGTCTATGTTTTTGTGAATTGTGTAATAAATCGTTTGATGCTAAAAGACATTTATGGCAGCATTTAAGAAGATTTCATTTAAAAGAAGCCGCTACATCATGCGGGGTTTGTCTGAAAGTTTGTAAAGATTATCTGTCGCTAGATGCCCATTTGGCGgctgaacataaaaataattttgaaggaGAAGGAAAGAATTTCACTTGCCGTGTTTGTGGACGTTATCATAATTCACGCTCCAAATTGGAACAACATTCAATTATCCATCCAGGACAGCAAGCAAGGACACAAGCAGCTTTATTTAACTGTGGTTATTGTTCATTGGCGTTCAATTCAGAAATTATGTTGGAAAAACATGAATTATCGGAACATAAGGAACAAAATGATACTGGTGAGATCACAGATGCAAATGAATTGGTACAAGATGAAGATAGTAGAAGTAGCACAAGTAGTAGCAGTAGTGCAAACAGTAGCTCTAGTAGCAGTAGTGAAAATAGTTCTAGTAGTAATAGTAGCAGCAGTAGTAGCAGTTCAAgcagtagtaatagtagtagttcAAGTAATAATAGCAGCAGTTCAAGCAGTAGTTGTTCATCAGATGATGAAAATGGTAAAAGAAATAATGATAACGATAAACACGATGACAGTAGTTGTGAAATAATCGATAGGCCAGAAGAACAACCTAACACATCTTCAAAACGAAATAGGTCGTCTAGTTCAAAAATTAAAGAATCGACagtatttaatgtaaataaaaatttctctGCCGTAGGCTCTAACTCTTCAGTTTCAAATCGTACTAATACCAGATCCAGTACTTTAAATAGGTTAGCTGAAAATTCTtgtgatttaaataaaacaaaagttaatgAATCTCTTAATTTTAAAGTAAGAAATGAAAACGATAACGCCGTGTTATCCATTGACGATGAAGATGACGAAAACAGtagcaataataaaaaagtatgtaGTAACGAAAATAATgttttaactaataatttaaaacaaaaagcaaaaaattttcaagaaaaacgATCACAAAGAGTATTAAATTCGAAAGGTAATGATAGTAGTAGTGGCAGTAGTAATAATCGCAAAAAAGATAGTTTACTAAATGTGTCATCAAGTTTTATTAAAGATAGTGTTTCATGTAATTTATCAGAAGACAGTTCTGTTTCGTCGAACGATGTAGAATTCCAAGAAATGAAACCATCTACCACTGcaaatgtttaa
- Protein Sequence
- MGDIEEDKFEALCRLCASYDAVQMDIFGEKGRERNIIEKIHTCLPFQVKERDLLPKSICYRCMYNLENFYDFRKGCVDAVNKLEKFIALSGRLKIKDEYGEYEESASASMATDDEDIPNPADFLEACLVGEPSGNQLDTKDGILQEYECPVDDFTCTTCGRTFNSRGALTLHSKYHTGESDQSQLFTCHVCDKVFSSKGHLASHSKVHIGDLTERHPPPDPNAPILPSLIGTRGGKRTSDGQLKTEPVTEAETYIESSETHALSPSLPPELFQPGPSKVKSKTDTEKTEYCSSNPSNLFKHPPEMLSTVYSASEPIEFLEESEEEMLQSSDDFSGESEMENSSGEKDEDKLLNTFSNIQQQNTLTVNNRNWTADRPAKDPIIFNKETGLSQQFDGDRPIDIFKVVFAQTVIDLTVTETNKFGNMLKEKLITPQARIKYWKPVTAEEFLTWLGLLYHMGTIPLQRLSDYWNTNFLFGIPVFRACMSRDRFCSILQCLHFNDAPPTATDKLIPIRPLLDTFNQTMDTIYKPTKQLCIDKSMLLWKDRLVFPVYLKEKKRNNGTKLYMLTQPNGLVLRVIVYAGASDSEGGHEHADKVVHKLMEGKLDSGYSLFIDNYYNSVNLVHQLLKRKTYVTGTVRPNCKGNPPPITQAKLKPHKVSSLFSEDGVCIFKWHDQRDVLMISSEFGADMVKTTNRKGTPVSKPEAVVEYNQAMGGIDRIDQMMAYYPIERKTLEWVKKLAIHIFHLSLINSFFLHQKHFPSLKIKLHEFRLSIITALVSPSYRPKMIKNPIERKNILDEHIPKQYEVKEGENRKTRRRCRQCYKIKIRKDTTFFCPFCPGFPALCAKPCFQEYHEEMFEKVPFKCDLCEKSYSMAKHLWGHVSVSHKGDPKVSCQFCSRTFSTIANLDDHKKSKHASEISALAAENVDTTEIKTDFRSDDEDDCDEDDEDEENKQSNEETSNQEFLSRRRKSSASKKLKRNHSAIEDDKSSDITKDGSNSNGTEKSTFSCLLCDKSFNEKNLLLDHLSESHGIEPGDITLSQYMDESNCENLENEDDYVMAESMVETETVFCCEVCGRDFNDRASLWLHMLYSHREEAATACGLCLRVCSDYSSLTEHIQNCHPKDRLKSDQRRYSCQICGRQLDSKKKLLTHVKIHNLYDNTGQVVDPESVIIMNSKLNQQNLQSILKESSEYENSIFESLKDDGHVMSCEICFKVFPNEEKLVKHKQNAHRNSQGPNSVNSSTTYYLYFSCELCGLAHSTRTERWRHVFSCHANEPSLLCEEEKCGKVFPTRSLKTEHAASHHSLQGEIPNTCEVCGKLWATRVNFWKHMMSVHADCLPFICGVCLKVFCSVADLSTHVKDRHAPLTEGDFCCDICGRPYSNKSKMSRHRKIHVLPESEGGLPPGHELEVLTPISDKPSSIDFGDQLKCSLCPEEEFTVLEELSQHRRSVHNLVPCDLCTKFYGRSSHLWKHVNKIHKNHPDITCNICFRTSASRGHLANHMSKHHREESQNYVDISELSNEETIHTCEKCKKVFRKHVLLRKHSKHCVGPKVTGPVPSPCDRCSKIFDSPVLLRKHKRISHLLFKCEICEDVAHDSRIELMDHIKEVHAGHPDLACNFEGCNKMLRCKADLDKHKREHRFSRMPPTCGFCGELTPNKIKLRNHLKTKHPLLTKYLCAVCLIEFKDFDELRKHVNSNHKAILTKPNVCSICARTYANKSKVLAHIRTHGDQFFPCNKCLKICTKEEQLKRHLEAHMEENSEDEIEEEEEDDESQTIETETNNDDNENTGKTVVVDDDDESKNDIIEIKSENLANDVPDDIIDNDLEEIPSKRPRRSYTHACSACSKTFSSAGELLDHTKTEHNELLCACGKISDNIDSHNTHAKKCVSANKAETFKKLGLVNNKTDSTKNSLSPDKKMKFMGSNDQKSNSVYLNVIDNNIPANDKSMDKSTPRQREVRRVYKVDDGLCFCELCNKSFDAKRHLWQHLRRFHLKEAATSCGVCLKVCKDYLSLDAHLAAEHKNNFEGEGKNFTCRVCGRYHNSRSKLEQHSIIHPGQQARTQAALFNCGYCSLAFNSEIMLEKHELSEHKEQNDTGEITDANELVQDEDSRSSTSSSSSANSSSSSSSENSSSSNSSSSSSSSSSSNSSSSSNNSSSSSSSCSSDDENGKRNNDNDKHDDSSCEIIDRPEEQPNTSSKRNRSSSSKIKESTVFNVNKNFSAVGSNSSVSNRTNTRSSTLNRLAENSCDLNKTKVNESLNFKVRNENDNAVLSIDDEDDENSSNNKKVCSNENNVLTNNLKQKAKNFQEKRSQRVLNSKGNDSSSGSSNNRKKDSLLNVSSSFIKDSVSCNLSEDSSVSSNDVEFQEMKPSTTANV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -