Ccar025631.1
Basic Information
- Insect
- Catonia carolina
- Gene Symbol
- -
- Assembly
- GCA_035578175.1
- Location
- JAQMRL010000002.1:141332321-141367715[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.7 9.1e+02 2.4 0.6 3 12 69 78 67 84 0.63 2 13 0.0077 1.2 11.5 0.1 1 23 298 320 298 320 0.94 3 13 3.1e-05 0.0049 19.0 1.5 1 23 328 350 328 350 0.99 4 13 0.0015 0.25 13.6 0.4 2 23 358 379 357 379 0.97 5 13 7.5e-06 0.0012 20.9 1.2 1 23 385 407 385 407 0.99 6 13 3.1e-05 0.0049 19.0 0.4 1 23 414 436 414 436 0.97 7 13 0.00031 0.049 15.9 0.5 1 23 442 464 442 464 0.91 8 13 2.5e-05 0.004 19.3 0.2 1 23 470 492 470 492 0.98 9 13 1.2e-06 0.00019 23.5 1.2 1 23 498 521 498 521 0.96 10 13 1.2e-05 0.002 20.2 0.8 1 23 527 550 527 550 0.96 11 13 3.4e-05 0.0055 18.9 3.8 1 23 556 578 556 578 0.99 12 13 1.3e-05 0.0021 20.1 0.5 1 23 584 606 584 606 0.97 13 13 0.00048 0.077 15.2 0.1 1 23 612 636 612 636 0.94
Sequence Information
- Coding Sequence
- ATGACTGCAGATGCTGATAAGGGCCCAGCGGCCAAAACAACTACAGTCTGCCTTCTTTGTAACGCTAGTGTGAACGTTTCTACTCGTAACTCATGTCAGATATTTCATCAGACAGTTAGTGCTTCTAATCGCCCTGTAGCTGAaattatttctagtgttttaggCATTGAACTTAGAGAAGGAGTAGTACAGACTTCGATTATttgtaaaaagtgttttaaatcaTGCAATGAAGTTGATGAATTACAAGAAAGACTCACTGAACTGAAGATAGAAATTAATGGAACGTATCATCGTACAgtcaagaaATTTGAAATAGAAGACGAAGAAGAACAGCAACAACAGGACAATTTATCGGATGTTAAACAGAATGATGAAACGAGTAAAGAtgacaaaaatttaaagaatagaaGTCCTAAACAGCCAATCAAGAAAGTTATCGTTGCCAAAAAACAGTTGTCTCAAACAATTAAAGATGACAATAGAGACTTATTAAATAATTCAACTGCACGAAGcgaacaaaaagaaaatagTGACGTTAACAAAATGATCGAATCAGATGATGAAGTGATACAAGATCCAGGCGATGCGAATGATAGTGACTATGTACCTGATAACGAGAAATTAAAAGACGATAAACAAATAAAAGTAGAAGTCTTGGAAGAAGATATCACTGACAAAATATTAGGCGGAAAGAAAGGTTTGAAAGGTAGAAAAAAGAAACAAGCGCCACAAACCGTTAAAAACGAGCTTACTACTATGATCCCACAAATGGTTGTTAGCAGAGATGGTAACATCTATACTTGTTTACTGTGTTCTGCGGATGACAAAGTAATGAGCGATCCGAAAGGTATCGCAAACCATATGAAAGATGTTCACCAGTTAAAATTGTACATTTGTGATATTTGTGGGCAAGAGTTCCTTAAACGATCCGATCTATCTTCACATTTAGACGACCACGTTACAAACGAAGAGGGTGATTTTCAGTGTGAAATATGCAATCGTATCTTCTCTAATTTAAGATTGTACAGAGTGCATAAACGTATGCATCTTCCGCAGATCAAAAATTGGACTTGCGACCAATGTGGGAAGCGATACCTATCTCGGAATATGTTAGAAGAACATATGAACTCTCATACTGGAGTTAGGCCTTATCAGTGTGGCGTTTGTGGGAAGGATTTTGCTTCAAAGTATACGTTTAGATCGCATGAGAAAACTCACACCGAACGTCCACGCCCATTCGCATGTCCACAATGTCCAAAGACGTTTCTTACACAACAGAATTTGATTCAACATGAACGCACACATTCCGGTGTTAGAAATTATGTTTGTCAACAGTGTGGCAAAGGATTCGGTACTGCCAGAAACCTAGAGGTACATTGTTTGATTCACACAGGATATAAGCCCTTCGTTTGTAGATTATGTGGCAAAGCGTTTGCCAGAAAAGCGGAAATAAGGGATCATGAAAGAACACATACTGGTGAGAAACCGTACCAGTGTGAATTTTGCGGTGCTACTTTCAGTCAGCGTAGTAACCTCCAATCGCACAAAAGAGCAACACATTATGACGACAAAAGATATAAATGTATGGACTGTGGTAAAGGATTCAAACGGCGACGGTTATTGGATTACCATATGAAGGCTGCGCACACTGGAGAACGACCATACAAGTGTAACACTTGCAATGCTACCTTTATCTATCCAGAACATTTCAAAAAACATCGGCGTATACACACTGGGGAGAAACCTTATCAGTGTGAGGTTTGCGGTAAAGCGTTCAACAGTCGAGATAACAGAAACGCACATAGGTTTGTACACAGTGATAAAAAACCGTACGAGTGTCTTGTCTGCGGTATGGGATTCATGAGAAAACCTTTGTTGTACAATCATATGCAAACTCAGGGTCATCTAAACGATACAATCGTAGTCAATCAACCTCGTTTAACAACAGATGAAGACATGATTGTACCACAAGGAGCTGAAATGACAGAAATGACCCTTGTAACTGATAGCGAGGGCAATCACAAGCTGCTTCCTGCTGACCAAGTTGATATCGATGGAACAGCAGGGGATACCAAAATGTACATCGCTGAATTAAAAGAACACGTAATAATTCAGCAGCGCAAAGACCCTATGGATAAACCTGCTGTTGTGGCTGAAGAAATCGCTGAAGGTGCTGAATATGAAGAAGCAGTAGAACATCTTATAATTGATGGACAGGTACATTTTTCGAACCCAAGTGGAATGGAAGCACTTGAAGGTAATGGAGAAGTTAGTTCAGTAGCAGAAATCACGACAAGTTTAGACGATAGACAGCATACGTTGGTGGTACCAGCATCGAGACACCACGGTTCATACAATGTCGGAGAACCGCAAACGACGATGGTGCAGACAGAAGACGGCCCCGTACATCTGGTACACATTCGAATACCCGGCGAGACTGACAGTAATCAATGGTACAATATAGTGCAACAATAA
- Protein Sequence
- MTADADKGPAAKTTTVCLLCNASVNVSTRNSCQIFHQTVSASNRPVAEIISSVLGIELREGVVQTSIICKKCFKSCNEVDELQERLTELKIEINGTYHRTVKKFEIEDEEEQQQQDNLSDVKQNDETSKDDKNLKNRSPKQPIKKVIVAKKQLSQTIKDDNRDLLNNSTARSEQKENSDVNKMIESDDEVIQDPGDANDSDYVPDNEKLKDDKQIKVEVLEEDITDKILGGKKGLKGRKKKQAPQTVKNELTTMIPQMVVSRDGNIYTCLLCSADDKVMSDPKGIANHMKDVHQLKLYICDICGQEFLKRSDLSSHLDDHVTNEEGDFQCEICNRIFSNLRLYRVHKRMHLPQIKNWTCDQCGKRYLSRNMLEEHMNSHTGVRPYQCGVCGKDFASKYTFRSHEKTHTERPRPFACPQCPKTFLTQQNLIQHERTHSGVRNYVCQQCGKGFGTARNLEVHCLIHTGYKPFVCRLCGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYDDKRYKCMDCGKGFKRRRLLDYHMKAAHTGERPYKCNTCNATFIYPEHFKKHRRIHTGEKPYQCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGMGFMRKPLLYNHMQTQGHLNDTIVVNQPRLTTDEDMIVPQGAEMTEMTLVTDSEGNHKLLPADQVDIDGTAGDTKMYIAELKEHVIIQQRKDPMDKPAVVAEEIAEGAEYEEAVEHLIIDGQVHFSNPSGMEALEGNGEVSSVAEITTSLDDRQHTLVVPASRHHGSYNVGEPQTTMVQTEDGPVHLVHIRIPGETDSNQWYNIVQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -